mRNA_H-paniculata_contig7786.15812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7786.15812.1
Unique NamemRNA_H-paniculata_contig7786.15812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: K0QZP2_THAOC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZP2_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 3.300e-12
Identity = 34/90 (37.78%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   70 NVMDMHRLLAHASEQITRHTAEAAGVVLTGEWRACKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            NV + H+ L H +E +TR TA A G+ LTG ++ C+ C+  K+ R  + K+T +RA    +R+++D+  P + +S+GGS H  +++DD+S
Sbjct: 1684 NVNEYHKELGHPNEVVTRSTAAARGIQLTGTFKPCEDCAVGKSKRKKLRKETVERAKKPGERMFLDISSP-KTTSIGGSIHWALMLDDHS 1772
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.540e-6
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:  100 HASEQITRHTAEAAGVVLTG-EWRACKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            HA E++ R TA+  GV LTG     C  CS +K     V   T  RA     R+++DLGG M+++S+GGS   + IV D++
Sbjct: 1262 HAHEKLLRDTAKQQGVQLTGGPLLPCLSCSISKGQVKPVGTSTSTRAVKKLVRIFLDLGGKMKIASIGGSLFTLKIVCDHT 1342
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A699RMC4_TANCI (Putative ribonuclease H-like domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699RMC4_TANCI)

HSP 1 Score: 51.6 bits (122), Expect = 1.330e-5
Identity = 23/60 (38.33%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:  160 EWRACKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            E   C  C   K+ R   P K    +    + L++DL GPMR++S+ G  H+++IVDDYS
Sbjct:   52 EEHICPSCEQGKSKRASHPPKPVPNSRQRLQLLHMDLCGPMRIASINGKRHILVIVDDYS 111
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A699MZP6_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699MZP6_TANCI)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  172 CKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            C  C   K+ R   P K    +      L++DL GPMR+SS+ G  HV++IVDDYS
Sbjct:   97 CPSCEQRKSKRASHPPKLVPNSRQRLHLLHMDLCGPMRISSINGKQHVLVIVDDYS 152
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A699K1Z2_TANCI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699K1Z2_TANCI)

HSP 1 Score: 51.6 bits (122), Expect = 3.300e-5
Identity = 24/56 (42.86%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  172 CKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            C  C   K+ R   P K    +      LY+DL GPMR+SS+ G  +V++IVDDYS
Sbjct:  197 CPSCEQGKSKRASHPPKPVPNSRQRLHLLYMDLCGPMRISSINGKRYVLVIVDDYS 252
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A6L2MYE2_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MYE2_TANCI)

HSP 1 Score: 51.2 bits (121), Expect = 4.520e-5
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  172 CKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            C  C  +KA R     K    +      L++DL GPMRV+S+ G  H+++IVDDYS
Sbjct:  459 CSSCELSKAKRSSFKSKAVPSSKGRLHLLHMDLCGPMRVASINGKKHILVIVDDYS 514
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BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Match: A0A699LGY2_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699LGY2_TANCI)

HSP 1 Score: 50.8 bits (120), Expect = 5.520e-5
Identity = 23/56 (41.07%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:  172 CKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLGGSSHVIIIVDDYS 339
            C  C   K+ R   P K    +      L++DL GPMR++S+ G  HV++IVDDYS
Sbjct:   39 CPSCEQGKSKRASHPPKLVPNSRQRLHLLHMDLCGPMRIASINGKRHVLVIVDDYS 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7786.15812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
K0QZP2_THAOC3.300e-1237.78ATP-dependent DNA helicase (Fragment) n=1 Tax=Thal... [more]
A0A6H5KU45_9PHAE1.540e-639.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A699RMC4_TANCI1.330e-538.33Putative ribonuclease H-like domain-containing pro... [more]
A0A699MZP6_TANCI2.210e-542.86Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A699K1Z2_TANCI3.300e-542.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6L2MYE2_TANCI4.520e-541.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A699LGY2_TANCI5.520e-541.07Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7786contigH-paniculata_contig7786:3745..4083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Best eggNOG OGNA|NA|NA
Exons1
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog159749.K0QZP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PIF1-like helicase
EggNOG OGs2XG4E@2836,COG0507@1,COG2801@1,KOG0017@2759,KOG0987@2759
COG Functional cat.L
Best tax levelBacillariophyta
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.1911883-CDS-H-paniculata_contig7786:3744..40831622930967.1911883-CDS-H-paniculata_contig7786:3744..4083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7786 3745..4083 -
1691481531.1969388-CDS-H-paniculata_contig7786:3744..40831691481531.1969388-CDS-H-paniculata_contig7786:3744..4083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7786 3745..4083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7786.15812.1prot_H-paniculata_contig7786.15812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7786 3745..4083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7786.15812.1

>prot_H-paniculata_contig7786.15812.1 ID=prot_H-paniculata_contig7786.15812.1|Name=mRNA_H-paniculata_contig7786.15812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
EVEAVRSAAGTSRALTARKSSNRNVMDMHRLLAHASEQITRHTAEAAGVV
LTGEWRACKGCSTAKAHRFGVPKKTDKRATWAAKRLYVDLGGPMRVSSLG
GSSHVIIIVDDYS
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mRNA from alignment at H-paniculata_contig7786:3745..4083-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7786.15812.1 ID=mRNA_H-paniculata_contig7786.15812.1|Name=mRNA_H-paniculata_contig7786.15812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig7786:3745..4083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGGAGGCTGTTCGGAGCGCTGCGGGAACGTCAAGAGCCCTGACGGC
GAGAAAATCCTCGAATCGCAACGTTATGGACATGCATCGACTGCTTGCGC
ATGCGAGCGAGCAGATCACAAGGCATACGGCGGAAGCGGCCGGCGTCGTG
CTGACGGGTGAGTGGAGGGCCTGCAAAGGGTGCTCCACTGCAAAGGCTCA
CCGATTCGGCGTGCCGAAAAAGACCGACAAGCGAGCCACATGGGCAGCGA
AGCGCCTATACGTCGACCTGGGCGGACCCATGCGAGTATCCAGCTTGGGC
GGCAGCTCGCATGTGATTATTATCGTCGACGACTACTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig7786:3745..4083-

>mRNA_H-paniculata_contig7786.15812.1 ID=mRNA_H-paniculata_contig7786.15812.1|Name=mRNA_H-paniculata_contig7786.15812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig7786:3745..4083- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGGAGGCTGTTCGGAGCGCTGCGGGAACGTCAAGAGCCCTGACGGC
GAGAAAATCCTCGAATCGCAACGTTATGGACATGCATCGACTGCTTGCGC
ATGCGAGCGAGCAGATCACAAGGCATACGGCGGAAGCGGCCGGCGTCGTG
CTGACGGGTGAGTGGAGGGCCTGCAAAGGGTGCTCCACTGCAAAGGCTCA
CCGATTCGGCGTGCCGAAAAAGACCGACAAGCGAGCCACATGGGCAGCGA
AGCGCCTATACGTCGACCTGGGCGGACCCATGCGAGTATCCAGCTTGGGC
GGCAGCTCGCATGTGATTATTATCGTCGACGACTACTCGGAGGTGGAGGC
TGTTCGGAGCGCTGCGGGAACGTCAAGAGCCCTGACGGCGAGAAAATCCT
CGAATCGCAACGTTATGGACATGCATCGACTGCTTGCGCATGCGAGCGAG
CAGATCACAAGGCATACGGCGGAAGCGGCCGGCGTCGTGCTGACGGGTGA
GTGGAGGGCCTGCAAAGGGTGCTCCACTGCAAAGGCTCACCGATTCGGCG
TGCCGAAAAAGACCGACAAGCGAGCCACATGGGCAGCGAAGCGCCTATAC
GTCGACCTGGGCGGACCCATGCGAGTATCCAGCTTGGGCGGCAGCTCGCA
TGTGATTATTATCGTCGACGACTACTCG
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