prot_H-paniculata_contig77569.15788.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig77569.15788.1
Unique Nameprot_H-paniculata_contig77569.15788.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.100e-41
Identity = 82/181 (45.30%), Postives = 107/181 (59.12%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 182
            +P G K I S+W+++ K+D T+K RVVAQ W Q  G DCG   +PV RIQSV     +    +L   ++D  TAFL A + E+V+V  PPGFE     G  +V+KL +SLYG+ QSP NW  T++  L ++ FVA KSDPCVY+Y               H      LTLYVDDLL+AG D
Sbjct:  170 VPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 336          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.030e-39
Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 182
            +P   K I S+W+++ K+D T+K RVVAQ W Q  G DCG   +PV RIQSV     +    +L   ++D  TAFL A + E+V+V  PPGFE     G  +V+KL +SLYG+ QSP NW  T++  L ++ FVA KSDPCVY+Y               H      LTLYVDDLL+AG D
Sbjct: 1191 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 1357          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.040e-39
Identity = 81/181 (44.75%), Postives = 106/181 (58.56%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 182
            +P   K I S+W+++ K+D T+K RVVAQ W Q  G DCG   +PV RIQSV     +    +L   ++D  TAFL A + E+V+V  PPGFE     G  +V+KL +SLYG+ QSP NW  T++  L ++ FVA KSDPCVY+Y               H      LTLYVDDLL+AG D
Sbjct: 1356 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLY--------------DHNGAKIYLTLYVDDLLLAGND 1522          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 2.290e-37
Identity = 79/181 (43.65%), Postives = 107/181 (59.12%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGK 181
            +P G K IGSRWLY++K+    KAR+  Q WGQ  G D G   +PV R  S    MA+AA     V  +D  TAFL + ++E+VYVR   G+E  D VTG+ LV+KL++SLYG++QSP+N+       + ++ F A  SDPCVY+Y         A  TY      AIL +YVDD  +AG+
Sbjct:   34 LPPGAKPIGSRWLYKMKATGVMKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY--------GAGPTY------AILCVYVDDCTLAGR 200          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.360e-37
Identity = 75/181 (41.44%), Postives = 108/181 (59.67%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKD 182
            +P G K I S+W+++ K+  ++K R+VAQ W Q  G DCG   +PV R QS+     +A   +L++ ++D  TAFL A + E+V+V  PPGFE     G  LV++L++SLYG+ QSP NW  T++ +L ++ FV  KSD CVY+Y               H      LTLYVDDLL+AG +
Sbjct:  499 VPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLY--------------DHDDVQVYLTLYVDDLLLAGNN 665          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.240e-36
Identity = 81/181 (44.75%), Postives = 109/181 (60.22%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGK 181
            +P G K IGSRWLY++K+    KAR++ Q WGQ  G DCG   +PV R  S    MA+AA     V  +D  TAFL + ++E+VYVR   G+E  D VTG+ LV+KL++SLYG++QSP+N+       + ++ F A  SDPCVY+Y         A  TY      AIL +YVDD  +AGK
Sbjct:  930 LPPGAKPIGSRWLYKMKATGVMKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVY--------GAGPTY------AILCVYVDDCTLAGK 1096          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 1.650e-36
Identity = 81/178 (45.51%), Postives = 105/178 (58.99%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEK-DTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLM 178
            +PAG   IG+RW+Y+VK+D  +KARVV Q W Q+ G DC    +PV +I S    +A+AAA    VI +D QTAFLN  L EDVY    PGFEK ++ TG  LV KL++SLYG+RQSP  W +T++  L    F    SDPCVY              T        +LTL+VDD+L+
Sbjct:  684 VPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVY--------------TKGSGNSYIMLTLFVDDILL 847          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 6.240e-36
Identity = 73/179 (40.78%), Postives = 105/179 (58.66%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAG 180
            +P G K I S+W+++ K+D ++K R+V Q W Q  G D G   +PV R+QS+      A   +L++ ++D  TAFL A + E+V+V  PPGFE     G  LV++L++SLYG+ QSP NW  T++  L ++ FV  KSD C+Y+Y               H      LTLYVDDLL+AG
Sbjct:   90 VPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFVEQPPGFEVKNKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPLLVEIGFVPLKSDTCIYLY--------------DHDDVQVYLTLYVDDLLLAG 254          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A6H5L1I6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I6_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.180e-33
Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 0
Query:    2 IPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFE-KDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILTLYVDDLLMAGKDKMI 185
            +P  +    +R+++++K D+ +KAR+VA    Q AGR  G+  +PV R+ S+    A+A     +V +LD   AFLNA  D DVYVR  PG E +D  TG ++V KL +SLYG+ QSP  W   +N+ L    +    SDPCVYI+VS   DELT            IL +YVDD+L+ G +K I
Sbjct:   34 VPKDVDIFDTRFVFKIKVDSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVS--GDELT------------ILAIYVDDILITGGNKEI 204          
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Match: A0A2R6NZL0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZL0_9APHY)

HSP 1 Score: 124 bits (311), Expect = 2.130e-32
Identity = 66/183 (36.07%), Postives = 106/183 (57.92%), Query Frame = 0
Query:    1 EIPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRIQSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTGVLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKTADELTALVTYKHQKDSAILT-LYVDDLLMAGKD 182
            ++P G K+I  +W+Y +K+D  YKAR+VA+ + Q+ G DC +  SPV R +S+C  +A AA  + ++  LD +TAFL   LDE++Y+  P GF K  +     V +LR+++YG++Q+   W   ++  L KL FV  KSD  +Y+Y               HQ+   ++  LYVD++L  G +
Sbjct:   10 DLPEGQKAIKCKWVYTIKADGCYKARLVAKGFSQQYGIDCEETFSPVARWESICFLLAHAALENWEIESLDVKTAFLYGKLDEEIYMEQPEGFMKKKMGAK--VCRLRKAIYGLKQASPTWYYKIDQSLTKLGFVCTKSDTGIYVY---------------HQRQGEVIVILYVDNILNIGPE 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig77569.15788.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JME8_9PHAE3.100e-4145.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.030e-3944.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.040e-3944.75Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JVC8_9PHAE2.290e-3743.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE2.360e-3741.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.240e-3644.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAG6_9PHAE1.650e-3645.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KWT4_9PHAE6.240e-3640.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L1I6_9PHAE1.180e-3341.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2R6NZL0_9APHY2.130e-3236.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..186
e-value: 3.4E-37
score: 128.4
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 3..160
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 67..182
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig77569contigH-paniculata_contig77569:3..563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig77569.15788.1mRNA_H-paniculata_contig77569.15788.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig77569 3..563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig77569.15788.1 ID=prot_H-paniculata_contig77569.15788.1|Name=mRNA_H-paniculata_contig77569.15788.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
EIPAGLKSIGSRWLYQVKSDNTYKARVVAQDWGQEAGRDCGKIVSPVYRI
QSVCTTMAVAAALDLDVIELDAQTAFLNAPLDEDVYVRLPPGFEKDTVTG
VLLVVKLRRSLYGVRQSPQNWRVTMNNYLGKLVFVAFKSDPCVYIYVSKT
ADELTALVTYKHQKDSAILTLYVDDLLMAGKDKMILD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like