mRNA_H-paniculata_contig7731.15757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: D7FZ54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ54_ECTSI) HSP 1 Score: 179 bits (454), Expect = 1.770e-49 Identity = 93/138 (67.39%), Postives = 105/138 (76.09%), Query Frame = 1
Query: 544 GDVRGELRWKALRRPRGYQVRRCYSSPDF--GGGQHFPSSDQDSLGIFGGQSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRGEGYDS 951
GD R KA RP G ++ + F G GQHFP SDQ+SLG+F G +RV+KPERIIIVRHGESLGN DESTYVHVPDWKIPLTKKGF +GQ+AGEKIKEYIGDKPLFIYTSPYLRTKQ +A G E +D+
Sbjct: 61 GDSSLSSRRKASHRP-GARMHHPHDQRRFLRGSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLA--GMVEAFDT 195
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A6H5JRP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP2_9PHAE) HSP 1 Score: 177 bits (450), Expect = 3.470e-49 Identity = 84/107 (78.50%), Postives = 93/107 (86.92%), Query Frame = 1
Query: 631 GGGQHFPSSDQDSLGIFGGQSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRGEGYDS 951
G GQHFP SDQ+SLG+F G +RV+KPERIIIVRHGESLGN DESTYVHVPDWKIPLTKKGF +GQ+AGEKIKEYIGDKPLFIYTSPYLRTKQ +A G E +D+
Sbjct: 13 GSGQHFPHSDQESLGLFSGDGKRRVVKPERIIIVRHGESLGNRDESTYVHVPDWKIPLTKKGFGEGQKAGEKIKEYIGDKPLFIYTSPYLRTKQTLA--GMVEAFDT 117
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A836CA23_9STRA (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA23_9STRA) HSP 1 Score: 131 bits (329), Expect = 5.350e-31 Identity = 66/106 (62.26%), Postives = 80/106 (75.47%), Query Frame = 1
Query: 670 LGIFGGQSSKR-VIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEK-----------IKEYIGDKPLFIYTSPYLRTKQVVAVWGRGEGYDS 951
LGI+ R ++KPERIIIVRHGES+GNLDESTYVHVPDWKIPLTK+G++D + AG+K IKE++GDKPLFIYTSPYLRTKQ +A G E +D+
Sbjct: 66 LGIYSADHGHRKLVKPERIIIVRHGESMGNLDESTYVHVPDWKIPLTKQGYRDARLAGQKXXXXXXXXXXKIKEHVGDKPLFIYTSPYLRTKQTLA--GMVEAFDT 169
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A7S1XZK9_9STRA (Hypothetical protein n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZK9_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.360e-25 Identity = 58/110 (52.73%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 607 RCYSSPDFGGGQHFPSSDQDSLGIFGGQSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRG 936
R S D GG D G G +++P RII+VRHGES GN+D YV+ PDWKIPLTKKG+KD + AG++IKE +GD P++IYTSPYLRTKQ +A G+G
Sbjct: 50 RLRSISDAGGEHELDLHHIDGGGYSNGSG---IVRPARIILVRHGESAGNVDPQAYVNTPDWKIPLTKKGWKDARLAGQQIKEIVGDSPIYIYTSPYLRTKQTLA--GKG 154
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A4D9D0Z6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0Z6_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.050e-19 Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1
Query: 697 KRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRGEGYDS-----MR*QGTCEGQQFGYMPRQEYPQQAGK 1029
+++ KP RII+VRHGES GN+DE YV PDWK+PL+ G + ++ G ++K +GD+PL+IYTSPY RTKQ ++ E ++ +R + QQFG Q+ QQA K
Sbjct: 170 QQITKPHRIILVRHGESTGNVDERVYVETPDWKVPLSPIGHEQARQTGRQLKALVGDEPLYIYTSPYRRTKQTLS--NILESFEDNLKVGVREEPRITEQQFGNFQCQQLMQQAKK 283
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A7S0SR39_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR39_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.370e-18 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 691 SSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDK-PLFIYTSPYLRTKQVVAV 924
S ++ P+RII+VRHGESLGN+DE Y +PDWKIPLT+KG + G+KIKE IG+ P+ +Y SPY+RTKQ A+
Sbjct: 38 SMNKLRLPKRIILVRHGESLGNVDELAYCSMPDWKIPLTEKGKEQASNVGKKIKEIIGNNSPISVYLSPYIRTKQTFAL 116
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A7S2SR22_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR22_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 2.680e-17 Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 688 QSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVV 918
+ + +++P+RI +VRHGESLGN+ Y++VPDW+I LT++G + + G KI IG+ P+F YTSPY RTK+ +
Sbjct: 33 EKRRSLVRPKRIFVVRHGESLGNISPEVYINVPDWRISLTEEGKEQAKATGSKISHIIGEDPVFFYTSPYRRTKETL 109
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A7S0MDH0_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDH0_9CRYP) HSP 1 Score: 86.7 bits (213), Expect = 1.170e-16 Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 577 LRRPRGYQVRRCYSSPDFGGGQHFPSSDQDSLGI-FGGQSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLR 903
LR P G Q R+ + S P+ + G +++ V++P R+++VRHGES GN D + Y V DW+IPLT G + Q AG++++E IGD+ ++ Y SPYLR
Sbjct: 45 LRVPMGEQKRKPFRSQ--------PAPVDEIWGSPVAADAAREVLRPARVLLVRHGESQGNQDGAVYTRVSDWRIPLTPTGHRQAQAAGQRLRELIGDEDVYFYYSPYLR 146
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A0G4HIJ6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HIJ6_9ALVE) HSP 1 Score: 91.3 bits (225), Expect = 3.320e-16 Identity = 46/111 (41.44%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 688 QSSKRVIKPERIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRG---EGYDSMR*QGTCEGQQFGYMPRQEY 1011
QS + V+KP+RII++RHGES GN+D S Y VPD IPL++KG +D +RAGE++K +GD+ + Y SP+ RT + A + E Y ++R + Q++G++P + +
Sbjct: 79 QSYQNVLKPKRIILIRHGESQGNVDPSLYFTVPDNHIPLSQKGHEDARRAGEQLKALVGDETIRFYVSPFRRTDETFAGVAKAFPVEQY-AVRYEPRLREQEWGFLPSRAH 188
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Match: A0A2T0TLG9_9PSEU (Broad specificity phosphatase PhoE n=1 Tax=Umezawaea tangerina TaxID=84725 RepID=A0A2T0TLG9_9PSEU) HSP 1 Score: 87.0 bits (214), Expect = 3.520e-16 Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 718 RIIIVRHGESLGNLDESTYVHVPDWKIPLTKKGFKDGQRAGEKIKEYIGDKPLFIYTSPYLRTKQVVAVWGRGEGYD 948
RII++RHG+SLGN+DES Y VPD +PLT G + Q AG K+K +GD P+ +Y SPYLRT++ +A G+ D
Sbjct: 2 RIILLRHGQSLGNVDESAYCRVPDHSLPLTPLGERQAQAAGAKVKRLVGDGPVAVYVSPYLRTRRTLAGLELGDVVD 78 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7731.15757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7731.15757.1 >prot_H-paniculata_contig7731.15757.1 ID=prot_H-paniculata_contig7731.15757.1|Name=mRNA_H-paniculata_contig7731.15757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp MVSSCWSHRVQRTTRPSSLFLSGVGVKIASKSPLSHSQRACATRSSFCFYback to top mRNA from alignment at H-paniculata_contig7731:3359..7394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7731.15757.1 ID=mRNA_H-paniculata_contig7731.15757.1|Name=mRNA_H-paniculata_contig7731.15757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4036bp|location=Sequence derived from alignment at H-paniculata_contig7731:3359..7394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7731:3359..7394+ >mRNA_H-paniculata_contig7731.15757.1 ID=mRNA_H-paniculata_contig7731.15757.1|Name=mRNA_H-paniculata_contig7731.15757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig7731:3359..7394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |