mRNA_H-paniculata_contig7689.15697.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7689.15697.1
Unique NamemRNA_H-paniculata_contig7689.15697.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: D8LTE7_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.430e-26
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:   10 DEESERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISV 195
            DEE+ R L+NMARAARKVGPNDRVVELRKPMGLVLEEDERGNVY+VEI PGSNA+R K I+V
Sbjct:   61 DEEAARQLSNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYIVEIVPGSNASRKKQINV 122
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A7R9Y942_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y942_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.300e-15
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   31 LTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISV 195
            LTN  R+ R V   DR+VE++KP+GL+LEEDE+GNVYV  I PG NAARTK ++V
Sbjct:   73 LTNFFRSKRDVAAGDRLVEIKKPLGLILEEDEKGNVYVASITPGGNAARTKKVNV 127
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A7R9Y7V2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y7V2_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.720e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   31 LTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISV 195
            LTN  R+ R V   DR+VE++KP+GL+LEEDE+GNVYV  I PG NAARTK ++V
Sbjct:   73 LTNFFRSKRDVAAGDRLVEIKKPLGLILEEDEKGNVYVASITPGGNAARTKKVNV 127
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A835Z5U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.180e-14
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:   13 EESERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNI 189
            ++ E ALT  ARAARK GPNDRVVE+RKP+GLVLEE+E+G+V++ ++   SNA+R   +
Sbjct:   44 DDDEDALTAAARAARKAGPNDRVVEIRKPLGLVLEENEKGDVFITKVKDNSNASRNPKV 102
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A6U1P4I4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P4I4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.750e-13
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 VSDEESERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNI 189
            +SD+E    L   +RA RK G NDRV E+ KP+G+VLEEDERG+VYV ++ PG NAART  I
Sbjct:   44 LSDDEE---LRKQSRALRKPGANDRVAEVNKPLGMVLEEDERGDVYVADVIPGGNAARTGKI 102
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A4D9DC09_9STRA (PDZ domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC09_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.510e-11
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   37 NMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNI 189
            N  RAARK GP D VVEL+KP+G+VLEEDE+GNVYV E+ P  NA R+  +
Sbjct:   59 NKNRAARKPGPLDLVVELQKPLGIVLEEDEKGNVYVKELSPAGNAMRSGKV 109
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A7S4IT18_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IT18_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-10
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   19 SERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISVS 198
            SE  L    +A+R  G  DRVVELR+P+GLVL +D  GNVYV  + P  NAART  +S++
Sbjct:   48 SENDLRRWEKASRAAGAEDRVVELRRPLGLVLNDDGNGNVYVETVAPRGNAARTGEVSLN 107
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A6U4EGF8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EGF8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.270e-10
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   31 LTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISV 195
            LTN  RA R V   DR+VE++KP+GLVLEEDERG+VYV  +    NAART  ++V
Sbjct:   44 LTNFFRAKRGVAAGDRIVEIKKPLGLVLEEDERGDVYVASV--AGNAARTGKVNV 96
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BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A6U4EAC4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4EAC4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.980e-10
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   31 LTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNISV 195
            LTN  RA R V   DR+VE++KP+GLVLEEDERG+VYV  +    NAART  ++V
Sbjct:   44 LTNFFRAKRGVAAGDRIVEIKKPLGLVLEEDERGDVYVASV--AGNAARTGKVNV 96
[Close]
BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Match: A0A7S0KBW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KBW8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.440e-10
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:   19 SERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVEIYPGSNAARTKNI 189
            +++ L   ARA+R    +DRVVEL++P+GLVL+ED+ GNVYV  + P  NAART  +
Sbjct:   51 NDKDLLRWARASRSASADDRVVELKRPLGLVLDEDDSGNVYVETVAPRGNAARTGQV 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7689.15697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE7_ECTSI5.430e-2683.87PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7R9Y942_9STRA9.300e-1561.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9Y7V2_9STRA1.720e-1461.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A835Z5U3_9STRA3.180e-1457.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1P4I4_9STRA1.750e-1358.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DC09_9STRA1.510e-1162.75PDZ domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S4IT18_9STRA1.060e-1051.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U4EGF8_9STRA1.270e-1058.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4EAC4_9STRA1.980e-1058.18Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0KBW8_9STRA8.440e-1050.88Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7689contigH-paniculata_contig7689:156..2386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog2880.D8LTE7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DS7A@1,2S6FC@2759
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-02_006070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.665248-CDS-H-paniculata_contig7689:155..2631622930951.665248-CDS-H-paniculata_contig7689:155..263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7689 156..263 -
1691481524.900145-CDS-H-paniculata_contig7689:155..2631691481524.900145-CDS-H-paniculata_contig7689:155..263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7689 156..263 -
1622930951.6840098-CDS-H-paniculata_contig7689:2290..23861622930951.6840098-CDS-H-paniculata_contig7689:2290..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7689 2291..2386 -
1691481524.912062-CDS-H-paniculata_contig7689:2290..23861691481524.912062-CDS-H-paniculata_contig7689:2290..2386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7689 2291..2386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7689.15697.1prot_H-paniculata_contig7689.15697.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7689 156..2386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7689.15697.1

>prot_H-paniculata_contig7689.15697.1 ID=prot_H-paniculata_contig7689.15697.1|Name=mRNA_H-paniculata_contig7689.15697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MVSDEESERALTNMARAARKVGPNDRVVELRKPMGLVLEEDERGNVYVVE
IYPGSNAARTKNISVSI*
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mRNA from alignment at H-paniculata_contig7689:156..2386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7689.15697.1 ID=mRNA_H-paniculata_contig7689.15697.1|Name=mRNA_H-paniculata_contig7689.15697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2231bp|location=Sequence derived from alignment at H-paniculata_contig7689:156..2386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCTGATGAGGAGTCGGAGCGAGCTCTGACGAATATGGCGCGTGC
GGCGCGCAAGGTTGGACCCAACGATCGAGTCGTGGAGTTGCGGAAGGTTA
GAAGGGTGGAGAGGTTGTTGCGCCTGTTCTTTGTGGGTATCGAATTCTTG
ACTTTTGCCTCTCTAAGATCTTTTCCTTGTGGACATCTAATTCTTGCTTT
TTGCTATTTTAAGGCCAGTTCTTCCGTGGACTGAGAAATTAAAATTGAAA
ACTTGATTTCTCCAAAAATCCAAGTGAGAAATATCCAATTTAAAAGTCCC
ATCACCACGTCTTATGGGACATGGGAATTTTTATTGAGGGGTTCCAAACT
TGGGAAGACGGTTGTAACCGCAAGGAGTAGATAGTAATGCCATGGTCCAT
TAGTTTATAATTGGGCGGGATATGCAGTACGCAGCCTAAAAAGATTTTAC
CGCAGGCACGATGGCGAGAGCAGAAAATCCCCTCGCTGCTCAGAGGTGCG
TTTTGCCGCAATTGGATTTCTTTCTAAAAAATCGCATCAAAAATGTCCCA
CAAGAGTTGGCAATTGATTTTTTTTTTTTTTTTCCCATTTTTTGTAAATC
TTTGCATCCCCGTAAGAATTGGCTCAAGGTTGTTTTACTGTAGGCATCGG
ATTCTTGTTTATGACATGCTGTTGAGTAAACCCAAGTACTTTTTATCGTC
ATGTGCTACAAAAGAAACACGCGGAGATTGAAAATTTAGATTCAACATGC
CTCTCGTCGCCCGTCCTGTTTGCACACGAAAAATTATGCCAGGTTTACTA
GTCATTGGGCCCAAATTTTCAATATCGTATGATTTTTATTGTATGGTTCT
AGTTTAAAACATTACTGTTTTTATGACTAACCTGAAACAAGAATCAAAGT
AAGACCCGTAAGAAATGGGCCTTGAGAGTCACATCTAATTTCCGTCGGAA
ACTTGATATTTGTCATGGGTAAAACCCAATATTTCCTAGTCACTATGCAT
GTACATCGATGCCGATATTGAAAGCTTGCACTCTTAACACACACAAGATG
CTGCCATGCTTATTCTAGGTTTGTGTATTGAGGTGTGGAAATAGCATCGA
AATTGTCAGTGATGCTGCTTTGCAAGTATAGACCATGACAGTGTTTTCAC
GTTCCGGAAGCGGATTGCCTATCCGAGTTCTCCTTTATTGACGGTAACCT
GTTCCTAATCATTGGAGTGCTGCAGCAGCCGTTTTTGAGAGTGAGACATA
CCGATTCCATCGGATTCGATCCGAATCTGAAATAGGTTCGGTTTTTATGT
TCCATACTGAGGTGCTTGTCTACTGAAGAAGGCGACGGGTCCCATCATGC
ATGATAGTTGAAGCGCAACACGACTGCCGTCTCAACGTTCCAAGCACAGG
ACTAGGCTGATTCCGCTATTATTTTCGTGTTAGATTAGCGTCGCGGTGGC
CCAAAGACTGATTCATTCGCAGACACGGTCATAATCCCGTGGTCGTCATC
TCTGGCATATTCTATTTTCGCCTGGATTACCGTGTAACCGAAAACATGGA
TCGTCGTTTCTGTTGACAAACGGGAGGTGTACGATGCGCCATATCACACC
TGTGTTTGATGTTCTCCGATGAACGCTGACAGGGCTTTTCCCCATACCAC
TCGCAAGTCGTAAGCGTGTTCCAGAAACAAACGGCTTGTAGGTCAATTAT
CCCGCTTTACACTAGCCCATGCGGCTGTGTCACCCTTTCCATAATTACTC
AAAAGAGAAGAGTCTTGTGCTTGGTCTGATTTCGAAGTAAGGTGGTGGGA
CTCCATCTCCTGTACTGGTAGAGGCGTAGAATAATCCCAATGCAAAATGA
TCTGCTCGTCACAATGAAATCCAATTGAAGGTCGTACTCAATTACGCCGC
GTATCACTCTTGTCCTTGTCCTATCACGATACAAGCACAGACGTGAACTA
CATCTATTGATCCAAGAGGTCGTCTGTAGAGCACCAATCACAAACAGCAT
GGTCATCGTATGAGGGGGATCAGTTTCGAAAGAATTATTAACGGAATACG
TACGTTCTCTTGCTAATTGTTGCTTGCTTTCTTGCCACTCGCCGTTCCAT
GTTTGTGCGTGTTTGTGTTTCAGCCGATGGGATTGGTTCTGGAGGAAGAC
GAGAGAGGAAACGTTTATGTGGTGGAAATATACCCCGGCTCGAACGCCGC
CCGAACTAAGAACATCTCCGTGAGTATATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig7689:156..2386-

>mRNA_H-paniculata_contig7689.15697.1 ID=mRNA_H-paniculata_contig7689.15697.1|Name=mRNA_H-paniculata_contig7689.15697.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig7689:156..2386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCTGATGAGGAGTCGGAGCGAGCTCTGACGAATATGGCGCGTGC
GGCGCGCAAGGTTGGACCCAACGATCGAGTCGTGGAGTTGCGGAAGATGG
TCTCTGATGAGGAGTCGGAGCGAGCTCTGACGAATATGGCGCGTGCGGCG
CGCAAGGTTGGACCCAACGATCGAGTCGTGGAGTTGCGGAAGCCGATGGG
ATTGGTTCTGGAGGAAGACGAGAGAGGAAACGTTTATGTGGTGGAAATAT
ACCCCGGCTCGAACGCCGCCCGAACTAAGAACATCTCCGTGAGTATATAA
CCGATGGGATTGGTTCTGGAGGAAGACGAGAGAGGAAACGTTTATGTGGT
GGAAATATACCCCGGCTCGAACGCCGCCCGAACTAAGAACATCTCCGTGA
GTATATAA
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