mRNA_H-paniculata_contig7685.15693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7685.15693.1
Unique NamemRNA_H-paniculata_contig7685.15693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.630e-27
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:   54 PTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPPPK 284
            PTY+ MVF AIK LKERNGSS+QAIKK I  TYP +   F PHQ+RSALKKG E+GKFIK+K+SYKLSAEAKKP PK
Sbjct:    6 PTYNAMVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFIKMKASYKLSAEAKKPAPK 80
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 3.750e-26
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 3 
Query:   42 TAIMPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKP 275
            T   PTYS MVF AIK LKER GSSL A+KK I+ TYP +   F PHQ+RSALKKGTE+GKFIKVKSSYKLS EAKKP
Sbjct:    3 TTAKPTYSVMVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 78
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 5.780e-26
Identity = 58/72 (80.56%), Postives = 60/72 (83.33%), Query Frame = 3 
Query:   69 MVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPPPK 284
            MVF AIK LKERNGSS+QAIKK I  TYP  A  F PHQ+RSALKKG ETGKFIKVKSSYKLSAEAKKP PK
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYP--ALNFTPHQMRSALKKGVETGKFIKVKSSYKLSAEAKKPVPK 70
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.140e-24
Identity = 53/72 (73.61%), Postives = 60/72 (83.33%), Query Frame = 3 
Query:   69 MVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPPPK 284
            MVF AIK LKERNGSS+QAIKK I  TYP +   F PHQ+RSALKKG E+GKF+K+K+SYKLSAEAKKP PK
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKGVESGKFVKMKASYKLSAEAKKPAPK 70
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 4.490e-24
Identity = 55/76 (72.37%), Postives = 60/76 (78.95%), Query Frame = 3 
Query:   51 MPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPP 278
            MPTYSEM   AI  LKERNGSS+ AIKK+I  TYP +   F PHQLR ALKKGTETG FIKVK+SYK+S EAKKPP
Sbjct:    1 MPTYSEMAKVAILALKERNGSSVPAIKKHIQATYPTL--NFLPHQLRGALKKGTETGTFIKVKASYKVSPEAKKPP 74
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.590e-24
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 3 
Query:   54 PTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPPP 281
            PTY+ MVF AIK LKERNGSS+QAIKK I  TYP +   F PHQ+R ALKKG E+GKFIK+K+SYKLS EAKKP P
Sbjct:   99 PTYNVMVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRGALKKGVESGKFIKMKASYKLSPEAKKPAP 172
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.780e-23
Identity = 52/69 (75.36%), Postives = 57/69 (82.61%), Query Frame = 3 
Query:   69 MVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKP 275
            MVF AIK LKER GSSL A+KK I+ TYP +   F PHQ+RSALKKGTE+GKFIKVKSSYKLS EAKKP
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKGTESGKFIKVKSSYKLSPEAKKP 67
[Close]
BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: D8LJB8_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB8_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 5.310e-19
Identity = 48/75 (64.00%), Postives = 57/75 (76.00%), Query Frame = 3 
Query:   51 MPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKP 275
            MPTY EM   A+K LKERNGSSL AIKK+I  +YP +   F  H +RSALKKG E+GKFIKVK+SYKLSA  ++P
Sbjct:    1 MPTYDEMTIEAVKALKERNGSSLFAIKKHITASYPSLT--FTAHFMRSALKKGVESGKFIKVKNSYKLSAYRQEP 73
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BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.340e-18
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 3 
Query:   51 MPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSAEAKKPPPKKVLK 296
            MP+Y +M   AI  LK+R GSSL AIK YI   YP V  KF PH LR+ALKK  E GK IKVK+SYKLSA+ KKP  KKV K
Sbjct:    1 MPSYYDMAKAAILALKDRTGSSLPAIKAYITANYPSV--KFLPHALRAALKKAVEAGKLIKVKASYKLSADEKKP--KKVAK 78
[Close]
BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Match: A0A6H5JIM8_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-18
Identity = 48/70 (68.57%), Postives = 54/70 (77.14%), Query Frame = 3 
Query:   51 MPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSALKKGTETGKFIKVKSSYKLSA 260
            MPTY EM   A+K LKERNGSSL AIKK+I  +YP +   F  H LRSALKKG E+GKFIKVK+SYKLSA
Sbjct:    1 MPTYDEMTVEAVKALKERNGSSLFAIKKHITASYPSLT--FTGHFLRSALKKGVESGKFIKVKNSYKLSA 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7685.15693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ80_ECTSI2.630e-2774.03Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G4I5_ECTSI3.750e-2673.08H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LQ75_ECTSI5.780e-2680.56H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE4.140e-2473.61H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
D8LMF1_ECTSI4.490e-2472.37H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCU1_9PHAE6.590e-2471.05H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JHR9_9PHAE5.780e-2375.36H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJB8_ECTSI5.310e-1964.00H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y1F8_9STRA1.340e-1862.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5JIM8_9PHAE1.370e-1868.57H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7685contigH-paniculata_contig7685:2037..3783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue4.6e-22
Seed eggNOG ortholog2880.D7FWJ4
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size637
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7685.15693.1prot_H-paniculata_contig7685.15693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7685 2087..3727 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.3139677-UTR-H-paniculata_contig7685:2036..20861622930951.3139677-UTR-H-paniculata_contig7685:2036..2086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7685 2037..2086 +
1691481524.7867916-UTR-H-paniculata_contig7685:2036..20861691481524.7867916-UTR-H-paniculata_contig7685:2036..2086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7685 2037..2086 +
1622930951.418381-UTR-H-paniculata_contig7685:3727..37831622930951.418381-UTR-H-paniculata_contig7685:3727..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7685 3728..3783 +
1691481524.833501-UTR-H-paniculata_contig7685:3727..37831691481524.833501-UTR-H-paniculata_contig7685:3727..3783Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7685 3728..3783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.3556404-CDS-H-paniculata_contig7685:2086..21041622930951.3556404-CDS-H-paniculata_contig7685:2086..2104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 2087..2104 +
1691481524.7999344-CDS-H-paniculata_contig7685:2086..21041691481524.7999344-CDS-H-paniculata_contig7685:2086..2104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 2087..2104 +
1622930951.381294-CDS-H-paniculata_contig7685:2458..26231622930951.381294-CDS-H-paniculata_contig7685:2458..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 2459..2623 +
1691481524.8112822-CDS-H-paniculata_contig7685:2458..26231691481524.8112822-CDS-H-paniculata_contig7685:2458..2623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 2459..2623 +
1622930951.4028447-CDS-H-paniculata_contig7685:3379..37271622930951.4028447-CDS-H-paniculata_contig7685:3379..3727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 3380..3727 +
1691481524.822384-CDS-H-paniculata_contig7685:3379..37271691481524.822384-CDS-H-paniculata_contig7685:3379..3727Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7685 3380..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7685.15693.1

>prot_H-paniculata_contig7685.15693.1 ID=prot_H-paniculata_contig7685.15693.1|Name=mRNA_H-paniculata_contig7685.15693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MPTYSEMVFHAIKELKERNGSSLQAIKKYIVTTYPEVATKFAPHQLRSAL
KKGTETGKFIKVKSSYKLSAEAKKPPPKKVLKKVLKKPAPKTAVKKTLKK
KVLKKPAPKKKAVKKTPEKKVAKKKVKKVVKKVVKKASTDKAATSTPKKK
LVKKSASKKVTPKKVTKKPAAPKPTA*
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mRNA from alignment at H-paniculata_contig7685:2037..3783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7685.15693.1 ID=mRNA_H-paniculata_contig7685.15693.1|Name=mRNA_H-paniculata_contig7685.15693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1747bp|location=Sequence derived from alignment at H-paniculata_contig7685:2037..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCCAACCTGTTCCAAATCTTCACCTGGATCTCGACACCAACAGCAATC
ATGCCTACCTACAGCGAGGTACGTGATACAGCGGCCAAGGCGACTAGGTT
GGACCATTTGTTCTACATGCCAGATATGATGAGGGCGCCGACGCCGCTTG
TTGTGTTAGTTTCTGAAATCCTGACGTTATCGAGTGTCCGGAATGAAAGT
GACAGCGGTGTACCGAAGCGCAGGTCGATCATACGCTGTTACACTCAGGG
AAGTGGGCGCTGAACTTGAGCTGCCAAGATGCCGTCAGTAGCGCAACTCC
AGGTCCATGCCCATCATTTTACAGTCATACATATCACAAAGCGGCTGGAA
ATCATACCTCGAAGTTTCGCGAGCAAGACGTCAGCTTTTGCACTGTTTTT
TTACGTAACATTTGAATTACAGATGGTCTTCCACGCCATCAAGGAGCTCA
AGGAGCGCAACGGCTCGAGCCTCCAGGCCATCAAAAAGTACATCGTCACT
ACCTACCCCGAGGTGGCCACCAAGTTCGCCCCCCACCAGCTCCGCAGCGC
ACTCAAGAAAGGCACCGAGACCGGGAAATTCATTAAGGTGAGGGGCGCAG
CGAAAAGATAGATGGTCGAGTACGAAGCCCCATACTTGTATCCCCACATT
CTGTGCGGAAGAGCGGAGTACTTTAGTCCTCCCCGGTTCATGTATGGTGG
CCTGGTTGGATCTCAGCAGTCAGATGAAATCTACCAGATGTACTGGGGGT
TGGATACAGTGACAGGTGCTCGGTCTTGCATCTTATCTTTGGCAGATATA
TGTCTGCCGCACCTAAATAAGTCGTCCTACGGTAGGGGGGCGCTTTGTAT
AACGAAGGAACCACTTTGAGGACGGGACGGGGTGCACAAACACAGGCAAT
TATTTTTGGACCGCTTTTGCGAACAGCCTTCGTTAAACAGTTGACCCTCC
ACCTACCGTAGGATTAGGGGTAACCCTAACCTCATATCACGAATATCCTA
TCCATGAAAATGGTTACATATTATAATGGGCATACTGAAGGAATTCCTCA
CAAAATAATCTTCAGACGAATGTAGCATATCATGGAGGTTGGTTTATTTT
TATGTCTCAAACACCCCGAATAAATCTAGTATGATCCACTATCTGATTTA
TTCAGCGGGAACGGAATGCGATCCACTATCTGATTCTTTCAGCGGGGTTG
ATTGACCCCCGAGGTCGAGGCCACTTCATTTGAGGTTTCACGTTTGATCG
CCGCAGAATATAGTCGCTTCGAACGAGGCGAGTGAACTATGGAGTTTGGT
GCCTAAATGAACGTTCACCGTCTCCAAATGTTTCACCTGTCAGGTGAAAA
GTTCGTACAAACTTTCCGCCGAAGCAAAGAAGCCGCCGCCGAAAAAGGTG
CTCAAGAAGGTGCTCAAGAAACCCGCCCCCAAGACTGCAGTAAAGAAAAC
CCTGAAGAAGAAGGTGCTCAAGAAGCCAGCCCCCAAGAAGAAGGCGGTCA
AGAAGACACCTGAGAAGAAGGTGGCCAAGAAAAAAGTCAAGAAGGTGGTC
AAAAAGGTAGTAAAGAAGGCCTCCACCGACAAAGCAGCCACAAGCACTCC
CAAGAAGAAGCTAGTCAAGAAGTCTGCCTCGAAGAAGGTCACCCCCAAAA
AGGTGACGAAGAAGCCCGCTGCTCCCAAGCCCACGGCGTAAGCTTGGACA
CCGAAGGTATCCACCCTTGCCCCCCCTCGAGTCCCGCCGTAACAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7685:2037..3783+

>mRNA_H-paniculata_contig7685.15693.1 ID=mRNA_H-paniculata_contig7685.15693.1|Name=mRNA_H-paniculata_contig7685.15693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig7685:2037..3783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTACCTACAGCGAGATGCCTACCTACAGCGAGATGGTCTTCCACGC
CATCAAGGAGCTCAAGGAGCGCAACGGCTCGAGCCTCCAGGCCATCAAAA
AGTACATCGTCACTACCTACCCCGAGGTGGCCACCAAGTTCGCCCCCCAC
CAGCTCCGCAGCGCACTCAAGAAAGGCACCGAGACCGGGAAATTCATTAA
GATGGTCTTCCACGCCATCAAGGAGCTCAAGGAGCGCAACGGCTCGAGCC
TCCAGGCCATCAAAAAGTACATCGTCACTACCTACCCCGAGGTGGCCACC
AAGTTCGCCCCCCACCAGCTCCGCAGCGCACTCAAGAAAGGCACCGAGAC
CGGGAAATTCATTAAGGTGAAAAGTTCGTACAAACTTTCCGCCGAAGCAA
AGAAGCCGCCGCCGAAAAAGGTGCTCAAGAAGGTGCTCAAGAAACCCGCC
CCCAAGACTGCAGTAAAGAAAACCCTGAAGAAGAAGGTGCTCAAGAAGCC
AGCCCCCAAGAAGAAGGCGGTCAAGAAGACACCTGAGAAGAAGGTGGCCA
AGAAAAAAGTCAAGAAGGTGGTCAAAAAGGTAGTAAAGAAGGCCTCCACC
GACAAAGCAGCCACAAGCACTCCCAAGAAGAAGCTAGTCAAGAAGTCTGC
CTCGAAGAAGGTCACCCCCAAAAAGGTGACGAAGAAGCCCGCTGCTCCCA
AGCCCACGGCGTAAGTGAAAAGTTCGTACAAACTTTCCGCCGAAGCAAAG
AAGCCGCCGCCGAAAAAGGTGCTCAAGAAGGTGCTCAAGAAACCCGCCCC
CAAGACTGCAGTAAAGAAAACCCTGAAGAAGAAGGTGCTCAAGAAGCCAG
CCCCCAAGAAGAAGGCGGTCAAGAAGACACCTGAGAAGAAGGTGGCCAAG
AAAAAAGTCAAGAAGGTGGTCAAAAAGGTAGTAAAGAAGGCCTCCACCGA
CAAAGCAGCCACAAGCACTCCCAAGAAGAAGCTAGTCAAGAAGTCTGCCT
CGAAGAAGGTCACCCCCAAAAAGGTGACGAAGAAGCCCGCTGCTCCCAAG
CCCACGGCGTAA
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