mRNA_H-paniculata_contig768.15687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig768.15687.1
Unique NamemRNA_H-paniculata_contig768.15687.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig768.15687.1 vs. uniprot
Match: A0A6H5KRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.300e-13
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 RLPQSDARCVAQEVLLYLIRLLEELELDAAYAGLAPGQLWGCKV 135
            RLP  DAR VA+EVLLYL+RLLE+LELDA  AGL PGQLWGCK 
Sbjct:  228 RLPVGDARRVAEEVLLYLVRLLEDLELDAGTAGLKPGQLWGCKA 271
[Close]
BLAST of mRNA_H-paniculata_contig768.15687.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.310e-13
Identity = 34/44 (77.27%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    4 RLPQSDARCVAQEVLLYLIRLLEELELDAAYAGLAPGQLWGCKV 135
            RLP  DAR VA+EVLLYL+RLLE+LELDA  AGL PGQLWGCK 
Sbjct: 1297 RLPAGDARRVAEEVLLYLVRLLEDLELDAGAAGLKPGQLWGCKA 1340
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig768.15687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRF9_9PHAE2.300e-1377.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU3_ECTSI2.310e-1377.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig768contigH-paniculata_contig768:29937..31669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size188
Cds size186
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig768.15687.1prot_H-paniculata_contig768.15687.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig768 29937..31667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.710197-CDS-H-paniculata_contig768:29936..299621622930950.710197-CDS-H-paniculata_contig768:29936..29962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 29937..29962 +
1691481524.5634806-CDS-H-paniculata_contig768:29936..299621691481524.5634806-CDS-H-paniculata_contig768:29936..29962Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 29937..29962 +
1622930950.7227507-CDS-H-paniculata_contig768:30634..307251622930950.7227507-CDS-H-paniculata_contig768:30634..30725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 30635..30725 +
1691481524.5739548-CDS-H-paniculata_contig768:30634..307251691481524.5739548-CDS-H-paniculata_contig768:30634..30725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 30635..30725 +
1622930950.7348745-CDS-H-paniculata_contig768:31598..316671622930950.7348745-CDS-H-paniculata_contig768:31598..31667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 31599..31667 +
1691481524.5958948-CDS-H-paniculata_contig768:31598..316671691481524.5958948-CDS-H-paniculata_contig768:31598..31667Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 31599..31667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig768.15687.1

>prot_H-paniculata_contig768.15687.1 ID=prot_H-paniculata_contig768.15687.1|Name=mRNA_H-paniculata_contig768.15687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
RRLPQSDARCVAQEVLLYLIRLLEELELDAAYAGLAPGQLWGCKVSPDDA
PDACNAGTDTID
back to top

mRNA from alignment at H-paniculata_contig768:29937..31669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig768.15687.1 ID=mRNA_H-paniculata_contig768.15687.1|Name=mRNA_H-paniculata_contig768.15687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1733bp|location=Sequence derived from alignment at H-paniculata_contig768:29937..31669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCCTTCCGCAAAGCGATGCGAGGTTCGACGGTAGAGTACCGCATTT
TACTGGGGTTATTTTGCTGGGTGTTGTCATACACTGTGCAGGGTATTGAA
TATGAATACAGATTCGGCAGGGGCTGTCGGGCAGAGCTCCGGTAAAGCAG
AGTAATGTAGTACCGTTTTTTCACCCCGAGAGTTGACGAGCCGCGACCTG
TTTTGACTGTGCGGGTCACTCAAGGATAATATGATGCAGAGGTCTACGTG
ATTGCGAAAAGGACAATGATATGTTGGGAGATCGAAGTGCAATAGCACAA
CCACAGTGCTGCGCCTCATGTACCAAGTCATTTATCGAGATTTTTTGGCA
CGAGTCCGACGCAGGTACCCTTCGTTTCCTCTGTTGTCGGTTATCCTTTT
TGAGTATTACAATCTTCTATGTGGTATCTACCATGCACATATGAGTAACA
TCGAATGTACACGGTTTTGTCTGCTGTTTTTTCGTTTGGTGAAAGGGTCT
TGATTGCGAAAACGTCGTCCTTGTTTTGCGACAGTCGATGGCGCTGGTAT
GTGCTCAGCTTGTGTCCCAGCTTGCGGTCCCGGCGGCTAGAGAGTTAGGT
ATCCATGCGCTGGCGACCTACGTTTTTCCGACACGAACCCGACCGAACTG
TACGAACGACAACTGAAAACCTCCCATTCGATATTCTCACGCTCCCAGGT
GTGTGGCGCAAGAGGTCCTTTTGTATCTTATCCGTTTACTGGAAGAGTTG
GAGCTAGACGCCGCTTACGCAGGGCTTGCGCCCGGACAGGTATGTTGCAA
TAGTATTCGCCAAGCTTTGGTCGTGTCCCATTTGGGATGCGTAGAGCCCC
ACTGTTATCAGCATCACGGTTCTATTTCTCGTGGCTTGTGAATCTTTTCG
GTGTGGTCGTTTACTACTTATTGAGTCGAGTGCCAAGCATGTTGAGAGGC
CACAGCCTTGCCTGTGATATTCAAAGCTGTGTGGGCTTGTCAAGACGTCT
ACTTGGGGGGTAGGGACGTTGTTGTGTTCTGCTGATATCTCGTGCTGTAT
TACCGCGTTTGTGTTTGTATTAGCCATAGAATTGGGGTAACTAGCCTTGT
AATATTGAAGAGAGCAGATCCTGCTCTCGTTATGTTTTTTCACTATGCGT
ATGCGTGTGCAATATGTGGTGTGTATGGCGTATATCTGGTCGTATCAAAT
AAGCGACCAGCCGTTTTTTTGCCCACAAAATTAGTACGATTGATAGCTTG
GCTATTCGAACTTTAGATGTTGCATGTAAGGGTAAAATTGTTTTTTATTT
TTATTCCGTCGGTTGATGTGTTCGGTGGCATCTATGTTAGTAACTCGTTG
TACCCAGTAGGATGATTCAGAAACTGTGCTTCCGCGCGTTGCATTGAGCG
TTACAAATGCAACGGACTGTCACAGTATGCTTCCACTTCGAGCCCATCCA
ATTTACACATTCTCTCTCTGTGACTCTCTTTCTCTCTTCGCCGAGCTCTC
CAAGAGCTCTAGAGCATGTACTTCTGGCCTGAATATATATTGCAACATAC
GTGTTGCCCAACCTTCTCACTTTATCTGTATCTCATTTTTCTTACGAAAA
GATCCCCCCGTCTCCGTCCCGCCCCATTTTTGTTTTGTGGCGTTAAAATG
TACAAAAAATAGCTGTGGGGTTGCAAGGTGTCACCCGATGACGCCCCCGA
CGCTTGCAACGCCGGGACTGATACGATAGACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig768:29937..31669+

>mRNA_H-paniculata_contig768.15687.1 ID=mRNA_H-paniculata_contig768.15687.1|Name=mRNA_H-paniculata_contig768.15687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig768:29937..31669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCGCCTTCCGCAAAGCGATGCGAGCGGCGCCTTCCGCAAAGCGATGCG
AGGTGTGTGGCGCAAGAGGTCCTTTTGTATCTTATCCGTTTACTGGAAGA
GTTGGAGCTAGACGCCGCTTACGCAGGGCTTGCGCCCGGACAGGTGTGTG
GCGCAAGAGGTCCTTTTGTATCTTATCCGTTTACTGGAAGAGTTGGAGCT
AGACGCCGCTTACGCAGGGCTTGCGCCCGGACAGCTGTGGGGTTGCAAGG
TGTCACCCGATGACGCCCCCGACGCTTGCAACGCCGGGACTGATACGATA
GACCTGTGGGGTTGCAAGGTGTCACCCGATGACGCCCCCGACGCTTGCAA
CGCCGGGACTGATACGATAGAC
back to top