mRNA_H-paniculata_contig768.15684.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig768.15684.1
Unique NamemRNA_H-paniculata_contig768.15684.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig768.15684.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.900e-22
Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 DRVCALRGVIVYILTLFHHSETD-----AGDGTEPSV--PSTVTVELEHPAERAVWNADASCVVVGDESGKLHFITSDGTLLFSQQVATPMSRRTHGPDGV----------PLAFHCLKFS 312
            DRVCALRG +V+I T FH    +     +G+G   +    S+V++EL HPAE   WN+ ASCVVVGD SG+LHF+T++GTL+FSQ + T ++R     D            P AF C+KF+
Sbjct:  106 DRVCALRGEVVHIFTFFHAGAEEVGGSSSGEGATAAAGESSSVSLELGHPAECGAWNSTASCVVVGDASGRLHFVTAEGTLIFSQPLLTNLARDGSSSDDPESGGETTVKSPRAFSCIKFA 226
[Close]
BLAST of mRNA_H-paniculata_contig768.15684.1 vs. uniprot
Match: A0A6H5KQ38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ38_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.170e-14
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   70 AGDGTEPSVPSTVTVELEHPAERAVWNADASCVVVGDESGKLHFITSDGTLLFSQQVATPMSRRTHGPDGV----------PLAFHCLKFS-ALKTRRQGSSA 345
            AG        S+V++EL HPAE A WN+ ASCVVVGD SG+LHF+T +GTL+FSQ + T + R                  P AF C+KF+ +  TR  G++A
Sbjct:   22 AGATAAAGKSSSVSLELGHPAECAAWNSTASCVVVGDASGRLHFVTPEGTLIFSQPLLTNLVRGXXXXXXXXXXXETTAKSPRAFSCIKFATSTDTRGPGAAA 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig768.15684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSU3_ECTSI4.900e-2244.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ38_9PHAE2.170e-1443.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig768contigH-paniculata_contig768:17050..18336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size417
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig768.15684.1prot_H-paniculata_contig768.15684.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig768 17050..18336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.2791913-CDS-H-paniculata_contig768:17049..171341622930950.2791913-CDS-H-paniculata_contig768:17049..17134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 17050..17134 +
1691481524.3837209-CDS-H-paniculata_contig768:17049..171341691481524.3837209-CDS-H-paniculata_contig768:17049..17134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 17050..17134 +
1622930950.3045132-CDS-H-paniculata_contig768:17579..177511622930950.3045132-CDS-H-paniculata_contig768:17579..17751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 17580..17751 +
1691481524.3935173-CDS-H-paniculata_contig768:17579..177511691481524.3935173-CDS-H-paniculata_contig768:17579..17751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 17580..17751 +
1622930950.3298109-CDS-H-paniculata_contig768:18176..183361622930950.3298109-CDS-H-paniculata_contig768:18176..18336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 18177..18336 +
1691481524.4028747-CDS-H-paniculata_contig768:18176..183361691481524.4028747-CDS-H-paniculata_contig768:18176..18336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig768 18177..18336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig768.15684.1

>prot_H-paniculata_contig768.15684.1 ID=prot_H-paniculata_contig768.15684.1|Name=mRNA_H-paniculata_contig768.15684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
DRVCALRGVIVYILTLFHHSETDAGDGTEPSVPSTVTVELEHPAERAVWN
ADASCVVVGDESGKLHFITSDGTLLFSQQVATPMSRRTHGPDGVPLAFHC
LKFSALKTRRQGSSALSLDLKSTQKAGPFRREEGGGEEL
back to top

mRNA from alignment at H-paniculata_contig768:17050..18336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig768.15684.1 ID=mRNA_H-paniculata_contig768.15684.1|Name=mRNA_H-paniculata_contig768.15684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1287bp|location=Sequence derived from alignment at H-paniculata_contig768:17050..18336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGTGTCTGCGCCTTGCGAGGCGTTATCGTTTACATCCTGACGTTATT
TCATCACTCTGAGACCGATGCTGGCGACGGTACAGGTAAACCTCTCGTGT
GCAACACACCTAGCTATCGAAACGTTGGCACGTGCGCACTGGTTTCAGTA
TCCGCGTGATCTCCTTATGTTTGGTCAATTTAATCGCTCGTGCTGTCTTC
ACACGCCCCCATTTGCGGTGGGCAATGGAATTTCCCCGCTTGCTTTACCC
TGTTCGTTTCGTACGAGTGGAAGTCTACCAGATCTGTTATTTCTCCACGC
CCCCTGGGCTGCGGGCTAATTTTTCCGCCCCCTAGTACATATTTTTTTCG
CGGTACTGGTGCGGGTTTACGATCAAATTCTCGGGGTCTTTTTTCGGTGT
CAAACATCAATAGTACTTCGAAATGATGGAGCATGTGCTTATTTATTTGG
AACTGTACTGTGCTGCAGTTTCCCTGACGCCAAATTTCTTTGCATGGACG
TTTCATATTTCCAATCTTCCAACGCTTAAGAGCCCAGCGTTCCATCGACG
GTAACGGTGGAGCTTGAGCATCCGGCAGAGCGCGCGGTTTGGAACGCGGA
CGCATCTTGCGTGGTGGTCGGAGACGAGTCCGGCAAGCTACACTTCATCA
CCTCCGACGGGACCCTTTTGTTCTCTCAGCAAGTTGCCACGCCCATGTCC
AGGTGAGAGAAGGCAACTACGTAGTTACCGTACGGACGGTATTGCAGAAG
CCACACAGGAGGGACATAAATGTTGAGCGTGGATTGAACAACTACGAAAT
GTGTTCCAACAGCCACTTTTTCCGTTATTTCTTCAGTTCCTCGTTCCTGT
GGGGTATCGCGCTGTATCGTGTCGACGCGTGACCACTTCGGATTTAGCGG
TCATCTTCGTTTTAGAGGCCGAGCAATTACGATGCTACCGAAAGAAGTCT
TATCACCTCCCCCCCCCCCTTCCCACTACATAGACACGTACTTTTGTCCT
GGCAGTAAAATCATCTTGCCCTCCAGGAGAACTTTTTCTTCTCACTGAAA
CTTGAAATAGGTTTGGGACTCTTTTTCAATTGTTCTAGTAACTTCATCTT
CCTCTGCCTGTTTGCCTATCGCTACAGAAGGACACACGGACCCGACGGAG
TTCCTCTCGCCTTTCATTGCCTCAAGTTTTCCGCTTTAAAAACTCGCCGG
CAAGGGAGCTCGGCGCTTTCGTTGGACCTGAAATCGACGCAGAAGGCGGG
ACCATTCAGGAGGGAGGAAGGGGGAGGAGAGGAGCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig768:17050..18336+

>mRNA_H-paniculata_contig768.15684.1 ID=mRNA_H-paniculata_contig768.15684.1|Name=mRNA_H-paniculata_contig768.15684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig768:17050..18336+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCGTGTCTGCGCCTTGCGAGGCGTTATCGTTTACATCCTGACGTTATT
TCATCACTCTGAGACCGATGCTGGCGACGGTACAGGACCGTGTCTGCGCC
TTGCGAGGCGTTATCGTTTACATCCTGACGTTATTTCATCACTCTGAGAC
CGATGCTGGCGACGGTACAGAGCCCAGCGTTCCATCGACGGTAACGGTGG
AGCTTGAGCATCCGGCAGAGCGCGCGGTTTGGAACGCGGACGCATCTTGC
GTGGTGGTCGGAGACGAGTCCGGCAAGCTACACTTCATCACCTCCGACGG
GACCCTTTTGTTCTCTCAGCAAGTTGCCACGCCCATGTCCAGAGCCCAGC
GTTCCATCGACGGTAACGGTGGAGCTTGAGCATCCGGCAGAGCGCGCGGT
TTGGAACGCGGACGCATCTTGCGTGGTGGTCGGAGACGAGTCCGGCAAGC
TACACTTCATCACCTCCGACGGGACCCTTTTGTTCTCTCAGCAAGTTGCC
ACGCCCATGTCCAGAAGGACACACGGACCCGACGGAGTTCCTCTCGCCTT
TCATTGCCTCAAGTTTTCCGCTTTAAAAACTCGCCGGCAAGGGAGCTCGG
CGCTTTCGTTGGACCTGAAATCGACGCAGAAGGCGGGACCATTCAGGAGG
GAGGAAGGGGGAGGAGAGGAGCTCAAGGACACACGGACCCGACGGAGTTC
CTCTCGCCTTTCATTGCCTCAAGTTTTCCGCTTTAAAAACTCGCCGGCAA
GGGAGCTCGGCGCTTTCGTTGGACCTGAAATCGACGCAGAAGGCGGGACC
ATTCAGGAGGGAGGAAGGGGGAGGAGAGGAGCTC
back to top