mRNA_H-paniculata_contig76765.15676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76765.15676.1
Unique NamemRNA_H-paniculata_contig76765.15676.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 5.090e-28
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMMEV 195
            VG+AALSLGMIFVGTCNEEVGSV+VQRLMESSD ELE PMARLV LGLGLLFIGKNE+ADAMME+
Sbjct:  604 VGLAALSLGMIFVGTCNEEVGSVLVQRLMESSDTELEQPMARLVSLGLGLLFIGKNEQADAMMEI 668
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: D8LN95_ECTSI (RPN1_RPN2_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN95_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 5.880e-27
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMMEV 195
            VG+AALSLGMIFVGTCNEEVGSV+VQRLMESSD ELE PMARLV LGLGLL +GKNE+ADAMMEV
Sbjct:  606 VGLAALSLGMIFVGTCNEEVGSVLVQRLMESSDTELEQPMARLVSLGLGLLLMGKNEQADAMMEV 670
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S2G4T1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4T1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.290e-22
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            VG+AALSLG +FVGTCNEE G  ++QRLMESSDAEL+HPMAR + LGLGLLF GK EK + M+E
Sbjct:  516 VGLAALSLGQVFVGTCNEEAGGALIQRLMESSDAELDHPMARFLCLGLGLLFFGKMEKCEGMLE 579
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S2V4A2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.430e-21
Identity = 46/64 (71.88%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            V +AALSLG+IFVG+CNEEVGS +VQRLMESSDAEL+  ++R + LGLGLLF+GK EKA+AM+E
Sbjct:  544 VSLAALSLGLIFVGSCNEEVGSTLVQRLMESSDAELDQTVSRFLALGLGLLFLGKTEKAEAMLE 607
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.890e-20
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMMEV 195
            VG+AALSLG++F GTC+EEVGS + QRLMES+D EL+  MAR V LGLGLLF+ K EKADA++EV
Sbjct:  552 VGLAALSLGLVFAGTCDEEVGSALAQRLMESTDTELDQGMARFVSLGLGLLFLNKQEKADAVLEV 616
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S2CWB6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWB6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.560e-20
Identity = 44/64 (68.75%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            V +AALSLG +FVGTCNEEVGSV++QRLMESSDA+L+H MA  + LGL LLF+GK +K +AM+E
Sbjct:  530 VSLAALSLGQVFVGTCNEEVGSVMIQRLMESSDADLDHHMAPFLCLGLALLFLGKMDKCEAMLE 593
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S2WRI1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WRI1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.220e-19
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            V +A L+LGMIFVG C+E VGS IVQRLME++D EL+H  AR + LGLGLLF+GK EKADAM+E
Sbjct:   51 VSLAGLALGMIFVGKCDENVGSAIVQRLMEATDEELDHSHARFLCLGLGLLFLGKMEKADAMLE 114
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: W7TKW5_9STRA (Armadillo-like helical n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKW5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.760e-18
Identity = 43/64 (67.19%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            V +AALSLGMIFVGT N EV S++VQRLMES++A+L++PMAR ++LGL L F+G+ EKADAM+E
Sbjct:  549 VALAALSLGMIFVGTTNSEVASLLVQRLMESAEADLDNPMARFLVLGLALPFLGQMEKADAMLE 612
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BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S3PYU6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYU6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 9.600e-18
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:   10 AALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            AAL+LGMI VG CNEEVGS +VQ+LME+SD +L+H  AR + LGLGLLF+GK E ADAM+E
Sbjct:  563 AALALGMICVGKCNEEVGSSLVQKLMEASDEDLDHSHARYLCLGLGLLFLGKMENADAMLE 623
[Close]
BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Match: A0A7S2DXF7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2DXF7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-17
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 VGVAALSLGMIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKADAMME 192
            V +A L+LGMI+VG C++ VGS IVQRLME+SD +L+H  AR + LGLGLLF+G+ EKADAM+E
Sbjct:  560 VSLAGLALGMIYVGKCDDTVGSTIVQRLMEASDEDLDHSHARFLCLGLGLLFLGRMEKADAMLE 623
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76765.15676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE5.090e-2889.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN95_ECTSI5.880e-2787.69RPN1_RPN2_N domain-containing protein n=1 Tax=Ecto... [more]
A0A7S2G4T1_9STRA3.290e-2271.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2V4A2_9STRA5.430e-2171.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CK10_9STRA1.890e-2069.2326S proteasome non-ATPase regulatory subunit 2 n=1... [more]
A0A7S2CWB6_9STRA6.560e-2068.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WRI1_9STRA4.220e-1968.75Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
W7TKW5_9STRA2.760e-1867.19Armadillo-like helical n=2 Tax=Monodopsidaceae Tax... [more]
A0A7S3PYU6_9STRA9.600e-1868.85Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2DXF7_9STRA1.310e-1764.06Hypothetical protein (Fragment) n=2 Tax=Lithodesmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76765contigH-paniculata_contig76765:6..206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1e-18
Seed eggNOG ortholog2880.D8LN95
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.regulation of protein catabolic process
EggNOG OGsCOG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons1
Model size201
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.479463-CDS-H-paniculata_contig76765:5..1791622930949.479463-CDS-H-paniculata_contig76765:5..179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76765 6..179 -
1691481524.0879407-CDS-H-paniculata_contig76765:5..1791691481524.0879407-CDS-H-paniculata_contig76765:5..179Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76765 6..179 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930949.4955218-UTR-H-paniculata_contig76765:179..2061622930949.4955218-UTR-H-paniculata_contig76765:179..206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76765 180..206 -
1691481524.0986993-UTR-H-paniculata_contig76765:179..2061691481524.0986993-UTR-H-paniculata_contig76765:179..206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76765 180..206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76765.15676.1prot_H-paniculata_contig76765.15676.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76765 6..179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76765.15676.1

>prot_H-paniculata_contig76765.15676.1 ID=prot_H-paniculata_contig76765.15676.1|Name=mRNA_H-paniculata_contig76765.15676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MIFVGTCNEEVGSVIVQRLMESSDAELEHPMARLVMLGLGLLFIGKNEKA
DAMMEVR*
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mRNA from alignment at H-paniculata_contig76765:6..206-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76765.15676.1 ID=mRNA_H-paniculata_contig76765.15676.1|Name=mRNA_H-paniculata_contig76765.15676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig76765:6..206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGTGTGGCAGCATTGTCTCTTGGGATGATTTTCGTGGGCACTTGCAA
CGAGGAGGTAGGGTCGGTGATCGTGCAGCGGTTGATGGAGAGCTCCGATG
CCGAGCTGGAGCATCCTATGGCGAGGCTAGTAATGCTCGGGCTGGGGCTA
CTCTTTATCGGGAAGAACGAGAAGGCGGATGCTATGATGGAGGTGAGGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig76765:6..206-

>mRNA_H-paniculata_contig76765.15676.1 ID=mRNA_H-paniculata_contig76765.15676.1|Name=mRNA_H-paniculata_contig76765.15676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig76765:6..206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTCGTGGGCACTTGCAACGAGGAGGTAGGGTCGGTGATCGTGCA
GCGGTTGATGGAGAGCTCCGATGCCGAGCTGGAGCATCCTATGGCGAGGC
TAGTAATGCTCGGGCTGGGGCTACTCTTTATCGGGAAGAACGAGAAGGCG
GATGCTATGATGGAGGTGAGGTGAATGATTTTCGTGGGCACTTGCAACGA
GGAGGTAGGGTCGGTGATCGTGCAGCGGTTGATGGAGAGCTCCGATGCCG
AGCTGGAGCATCCTATGGCGAGGCTAGTAATGCTCGGGCTGGGGCTACTC
TTTATCGGGAAGAACGAGAAGGCGGATGCTATGATGGAGGTGAGGTGA
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