mRNA_H-paniculata_contig7596.15587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7596.15587.1
Unique NamemRNA_H-paniculata_contig7596.15587.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: D8LTZ3_ECTSI (Beta-1,4-galactosyltransferase, family GT7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ3_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 2.290e-99
Identity = 158/243 (65.02%), Postives = 172/243 (70.78%), Query Frame = 1
Query:  280 HDGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGEEGTSPSRSAKRPRPG-----SRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFL-RNQRAQVAEFRTFIVEQSADDR-KFNRGKLLNIGFDLARSEGFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEAR 987
            HDG+KLPPGWV+C SSK+ G  YFFDTQTG+S WF P           R   EE    S S            S +     G  KVAV+VP+RD DPAQRRS HL +FVPYME FL R       EFR ++VEQS DD  KFNRGKLLNIGFDLAR EG   FL HDVDLLPS +L  WY T PERPVH+ARVWKQYSNNPKYFGGVV+FNR+DFEAINGFPNTFWGWGGEDDEMYSRIVEAR
Sbjct:    4 HDGRKLPPGWVRCVSSKF-GRDYFFDTQTGESTWFAPT--APXXXXXSRXXXEEEDLESFSXXXXXXXXXXGPSSLPPQDGGKTKVAVVVPYRDLDPAQRRSAHLEQFVPYMEDFLERAVGGAGGEFRVYVVEQSTDDGLKFNRGKLLNIGFDLARKEGAQVFLLHDVDLLPSNELARWYATVPERPVHVARVWKQYSNNPKYFGGVVAFNRKDFEAINGFPNTFWGWGGEDDEMYSRIVEAR 243          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A836CFW6_9STRA (Galactosyl transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW6_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.950e-73
Identity = 122/239 (51.05%), Postives = 153/239 (64.02%), Query Frame = 1
Query:  292 KLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPEN--EGAGQQLAGRLRGEEGTSPSRSAKRPRPGSRIDAYGSGAV------KVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRNQRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSEGFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEA 984
            +LP GWV   S  Y G  Y+F+T TG++ W  P      +G   A   R     +   + KR    +     GSGA       +VA+IVPFRD    QRR+EHL +FVP M  F+    AQ  EF  FIVEQS D RKFNRGKLLNIG+D+A+++G+   + HDVDLLPS +LG WY   P +PVHIAR W +YSNNP YFGG+V+ + +D+EAING+PNTFWGWGGEDDEM  RI +A
Sbjct:    7 ELPEGWVSAPSRTYGGETYYFNTFTGEATWVYPSGAASSSGGAPANHKRALSEAADGPALKRQH--TEAAGQGSGAAQGEEPPRVAIIVPFRDQHAEQRRAEHLARFVPAMTQFML---AQGVEFHIFIVEQSEDGRKFNRGKLLNIGYDIAKNDGYNTLVLHDVDLLPSAELGPWYAAYPHQPVHIARRWPRYSNNPDYFGGIVAISIKDYEAINGYPNTFWGWGGEDDEMMLRIKDA 240          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A6U4I093_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4I093_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.280e-69
Identity = 122/235 (51.91%), Postives = 145/235 (61.70%), Query Frame = 1
Query:  295 LPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGEEGTSPSRSAKRPRPGSRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRNQRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSEGFTAFLFHDVDLLPSEDLGVWYTTTP-ERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEARRRM 996
            LPPGWVK  SS++   +Y+FDT TG S W PP                    PSR  KRPRP         G  +VAVIVPFRD   AQ+R+EHLRKF P+M +FL       +  + FI+EQS D  KFNRGKLLNIGFD+A  EGF  F+FHDVDLLP   L   Y   P E P+HIA +W +YS+NP+Y GG+V+F+R  F  INGFPN FWGWGGEDDEMY R+     R 
Sbjct:    5 LPPGWVKALSSEHQ-RYYWFDTATGASQWMPPXXXXXXXXXXX---------PSR--KRPRPSD-------GPPRVAVIVPFRDLHVAQKRAEHLRKFAPHMHAFLGGD---ASGHKVFIIEQSDDGLKFNRGKLLNIGFDIAAREGFDLFVFHDVDLLPHRALAPLYMRDPGEHPLHIAGLWDRYSDNPRYCGGIVNFSRAQFRRINGFPNFFWGWGGEDDEMYLRVEAVGMRF 217          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A7S4M9S3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M9S3_9STRA)

HSP 1 Score: 224 bits (572), Expect = 9.110e-69
Identity = 123/254 (48.43%), Postives = 157/254 (61.81%), Query Frame = 1
Query:  268 MSTMHDGKKLPPGWVK--CESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGEEGTSPSRSAKRPRPG-----SRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRN--QRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSE---GFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEARRR 993
            MS+ +D + LP GW     +S + P   YF    T  + W  P ++        + R EE T  +  AKR         S+     S A  VA+IVP+RD   AQ R+ HLR+FVP+M  FL+   +R  V+++  +IVEQS D RKFNRGKLLNIGFDLAR +   G   F+FHDVDLLP +DLG WY   P++P+HIARVW +YSNNPKYFGG+VSF+  D   ING+PNTFWGWGGEDDEM  R  +   +
Sbjct:    1 MSSSND-RPLPSGWSSGFSKSKQKP---YFICGATNHTQWHFPTDDDVADPKGAKHRVEE-TMRAELAKRSASSGGGGPSQKRPKSSDAASVAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQSDDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDLGEWYAKFPQKPLHIARVWGRYSNNPKYFGGIVSFSAADMRKINGYPNTFWGWGGEDDEMQKRCEKTNMK 249          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: B7G071_PHATC (Galactosyl transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G071_PHATC)

HSP 1 Score: 227 bits (578), Expect = 2.230e-68
Identity = 125/261 (47.89%), Postives = 157/261 (60.15%), Query Frame = 1
Query:  268 MSTMHDGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGE---------EGTSPSRSAKRPR--PGSRIDAYGSGAV----------KVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRN--QRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSE--GFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRI 975
            MS M+    LPPGW +  S+     FYF   +T  + W  P    A   L G+ R E         +    S + KRPR  PG  +      +V           VAVIVP+RD   AQ+R+ HL KFVP+M+ F     +  +V+++  +I+EQS D RKFNRGKLLNIGFDLAR        F+FHDVDLLP +DLG WY   P+ P+HIARVW +YSNNPKYFGGVVSF+  D++ ING+PNTFWGWGGEDDEM  R+
Sbjct:    1 MSDMNRDAPLPPGWSRGYSTSQKRTFYFHQ-ETKHTQWHFPTASEAKDPLKGKQRAELNKDREKKRQHEDSSGADKRPRGSPGEYMRKTVDTSVDDILELADSTSVAVIVPYRDIHSAQQRAAHLAKFVPHMQRFFNRLLKSGKVSDYHFYIIEQSDDGRKFNRGKLLNIGFDLARKSKRSHDVFIFHDVDLLPQDDLGSWYAKFPKSPIHIARVWGRYSNNPKYFGGVVSFSSSDYKRINGYPNTFWGWGGEDDEMQKRL 260          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A7S4HUL3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HUL3_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.290e-67
Identity = 123/254 (48.43%), Postives = 157/254 (61.81%), Query Frame = 1
Query:  268 MSTMHDGKKLPPGWVK--CESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGEEGTSPSRSAKRPRPG-----SRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRN--QRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSE---GFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEARRR 993
            MS+ +D + LP GW     +S + P   YF    T  + W  P ++        + R EE T  +  AKR         S+     S A  VA+IVP+RD   AQ R+ HLR+FVP+M  FL+   +R  V+++  +IVEQS D RKFNRGKLLNIGFDLAR +   G   F+FHDVDLLP +DLG WY   P++P+HIARVW +YSNNPKYFGG+VSF+  D   ING+PNTFWGWGGEDDEM  R  +   +
Sbjct:    1 MSSSND-RPLPSGWSSGFSKSKQKP---YFICGATNHTQWHFPTDDDVADPKGAKHRVEE-TMRAELAKRSASSGGGGPSQKRPKSSDAASVAIIVPYRDLHAAQNRARHLRQFVPHMLQFLKKLKRRGLVSDYHVYIVEQSDDGRKFNRGKLLNIGFDLARRDRRLGHNVFIFHDVDLLPGDDLGEWYAKFPQKPLHIARVWGRYSNNPKYFGGIVSFSAADMRKINGYPNTFWGWGGEDDEMQKRCEKTNMK 249          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A2R5GHL6_9STRA (Beta-1,4-galactosyltransferase 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHL6_9STRA)

HSP 1 Score: 223 bits (567), Expect = 1.240e-66
Identity = 125/258 (48.45%), Postives = 154/258 (59.69%), Query Frame = 1
Query:  283 DGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQLAGRLRGEEGTSPSRSAKRPRPGSRIDAYGS---------GAV------KVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRNQRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLA----RSEG-FTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEARRRM 996
            D + LP GW +C  SK     Y+F   TGKS+W   E   A           E TS S   KR R  S      S         GA       +VA+IVPFRD   AQ+R E L KFVP+M  FL + + ++A F  FIVEQS D RKFNRGKLLNIGF +A      +G F +F+FHDVDLLP E L  WY   P  P+HIA+ W +Y+NNPKYFGG+V+F+R+D+  I+GFPNTFWGWGGEDDE+  R+  AR R+
Sbjct:   21 DHRALPQGWEQC-MSKSQNRIYYFQKATGKSVWTRKEVFDA-----------ERTSESDRKKRDRDASSDHVNDSDLKRSKRQGGAEDRDDRRRVAIIVPFRDLHQAQKRKEQLDKFVPHMHQFLSDNK-EIASFHIFIVEQSDDGRKFNRGKLLNIGFKIAADPDHEDGPFDSFIFHDVDLLPQEALKPWYAKQPNVPLHIAKCWGRYNNNPKYFGGIVAFSRQDYTRIDGFPNTFWGWGGEDDELQKRVAAARLRI 265          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A1Z5KC44_FISSO (Beta-1,4-galactosyltransferase 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC44_FISSO)

HSP 1 Score: 221 bits (564), Expect = 2.160e-66
Identity = 117/246 (47.56%), Postives = 153/246 (62.20%), Query Frame = 1
Query:  280 HDGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLW-FPPENEGAGQQLA--------GRLRGEEGTSPSRSAKRPRPGSRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRN--QRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLAR---SEGFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRI 975
            H    LPPGW +  S+     FYF  ++T  + W FP  +E      A         R + +  T+    AKRPR  S        A  VA+IVPFRD   AQ+R+ HL++F+P+M  FL +  +  +++ +  +I+EQS D RKFNRGKLLNIGFD+AR   +     F+FHDVDLLP   LG WY   P+RP+HIARVWK+YSNNPKYFGG VSF+  D++ ING+PN +WGWGGEDDEM  R+
Sbjct:    7 HINDPLPPGWSRGFSNSQKRTFYFH-SETKHTQWHFPTASEAKDPMKALERANAAKEREKRKAATTAPPEAKRPRSESDNILEDLEASSVAIIVPFRDLHAAQKRAAHLQQFIPHMVQFLGSLTKDGKISNYHIYIIEQSDDQRKFNRGKLLNIGFDVARKAAARNHDVFIFHDVDLLPDAALGDWYAKFPKRPIHIARVWKRYSNNPKYFGGAVSFSSSDYKRINGYPNNYWGWGGEDDEMQRRL 251          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A7S3LF72_9STRA (Hypothetical protein (Fragment) n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LF72_9STRA)

HSP 1 Score: 215 bits (547), Expect = 9.140e-65
Identity = 117/263 (44.49%), Postives = 154/263 (58.56%), Query Frame = 1
Query:  268 MSTMHDGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLW-FPPENEGAGQQLAGRLRGEE----------------GTSPSRSAKRPRPGSRIDAYG------SGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRN--QRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLARSEG--FTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRI 975
            MS  +    LPPGW +  S+     FYF   +T  + W FP  +E    ++A +   E                   S   + KR R  +   +        + A  VAVIVP+RD   AQ+R+ HL++FVP+M  F     ++  V+ +  +I+ QS D RKFNRGKLLNIGFDLA   G     F+FHDVDLLPS +LG+WY   P +P+HIARVW +YSNN KYFGGVVSF++ DF  ING+PNTFWGWGGEDDE+ +R+
Sbjct:    1 MSDPNANAPLPPGWSREYSNSQKRHFYFHK-ETNHTQWHFPTASEAKDPKVAEKRAREAKERXXXXXXXXXXXAGAASQQPAVKRARSATNTKSNDDDFLELADATSVAVIVPYRDLHVAQKRAAHLKQFVPWMHQFFDKLQRKGLVSGYHVYIINQSDDGRKFNRGKLLNIGFDLATKSGRKHDVFIFHDVDLLPSPELGIWYAKMPTKPIHIARVWDRYSNNKKYFGGVVSFSKSDFRRINGYPNTFWGWGGEDDELQNRL 262          
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Match: A0A7S2R9Z3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2R9Z3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 3.690e-64
Identity = 111/240 (46.25%), Postives = 149/240 (62.08%), Query Frame = 1
Query:  286 GKKLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAG--QQLAGRLRGEEGTSPSRSAKRPRPGSRIDAYGSGAVKVAVIVPFRDGDPAQRRSEHLRKFVPYMESFLRNQRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFDLA----RSEGFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKYFGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEAR 987
            G +LP GW + E S+     YFF   T KS+W   E   A   + +  +   EE    S+  K+ +P +      +    VA+IVPFRD   AQ+RS+HL+KF+P+ME+FL      +  F  FIVEQS D +KFNRGKLLNIGF  A        F +F+FHDVDLLP E +  WY   P+ P+HIAR W +Y+NNP YFGG+V+F++EDFE I+GFPN + GWGGEDDE+  R+  ++
Sbjct:    2 GDELPIGWTR-EFSRSQAREYFFHAATRKSVWKREEIPTAATDKSVGDKRAPEEAAGSSQQVKKSKPDN------TPKTSVAIIVPFRDQHAAQKRSQHLKKFIPHMEAFLAETPG-IVNFHVFIVEQSEDGKKFNRGKLLNIGFKYACEFDTPHPFNSFIFHDVDLLPQEPVKKWYAKYPKYPIHIARCWGRYNNNPDYFGGIVAFSKEDFELIDGFPNLYAGWGGEDDELQKRVAASK 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7596.15587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ3_ECTSI2.290e-9965.02Beta-1,4-galactosyltransferase, family GT7 n=2 Tax... [more]
A0A836CFW6_9STRA1.950e-7351.05Galactosyl transferase n=1 Tax=Tribonema minus Tax... [more]
A0A6U4I093_9STRA3.280e-6951.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4M9S3_9STRA9.110e-6948.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7G071_PHATC2.230e-6847.89Galactosyl transferase n=2 Tax=Phaeodactylum trico... [more]
A0A7S4HUL3_9STRA1.290e-6748.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2R5GHL6_9STRA1.240e-6648.45Beta-1,4-galactosyltransferase 4 n=1 Tax=Hondaea f... [more]
A0A1Z5KC44_FISSO2.160e-6647.56Beta-1,4-galactosyltransferase 4 n=2 Tax=Fistulife... [more]
A0A7S3LF72_9STRA9.140e-6544.49Hypothetical protein (Fragment) n=2 Tax=Amphora co... [more]
A0A7S2R9Z3_9STRA3.690e-6446.25Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7596contigH-paniculata_contig7596:159..4610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue6.1e-81
Seed eggNOG ortholog2880.D8LTZ3
KEGG rclassRC00005,RC00049
KEGG koko:K07553
KEGG ReactionR03354,R06276
KEGG Pathwayko00600,ko01100,map00600,map01100
KEGG ModuleM00066
Hectar predicted targeting categoryother localisation
EggNOG free text desc.N-acetyllactosamine synthase activity
EggNOG OGsKOG3916@1,KOG3916@2759
Ec32 ortholog descriptionBeta-1,4-galactosyltransferase, family GT7
Ec32 orthologEc-12_003790.1
EC2.4.1.274
COG Functional cat.S
CAZyGT7
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons4
Model size999
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7596.15587.1prot_H-paniculata_contig7596.15587.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7596 159..4343 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.5791569-CDS-H-paniculata_contig7596:158..2941622930935.5791569-CDS-H-paniculata_contig7596:158..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 159..294 -
1691481517.8347416-CDS-H-paniculata_contig7596:158..2941691481517.8347416-CDS-H-paniculata_contig7596:158..294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 159..294 -
1622930935.5920792-CDS-H-paniculata_contig7596:665..7371622930935.5920792-CDS-H-paniculata_contig7596:665..737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 666..737 -
1691481517.8483672-CDS-H-paniculata_contig7596:665..7371691481517.8483672-CDS-H-paniculata_contig7596:665..737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 666..737 -
1622930935.6079342-CDS-H-paniculata_contig7596:2845..31171622930935.6079342-CDS-H-paniculata_contig7596:2845..3117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 2846..3117 -
1691481517.8611054-CDS-H-paniculata_contig7596:2845..31171691481517.8611054-CDS-H-paniculata_contig7596:2845..3117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 2846..3117 -
1622930935.626673-CDS-H-paniculata_contig7596:4091..43431622930935.626673-CDS-H-paniculata_contig7596:4091..4343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 4092..4343 -
1691481517.8709257-CDS-H-paniculata_contig7596:4091..43431691481517.8709257-CDS-H-paniculata_contig7596:4091..4343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7596 4092..4343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930935.63982-UTR-H-paniculata_contig7596:4343..46101622930935.63982-UTR-H-paniculata_contig7596:4343..4610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7596 4344..4610 -
1691481517.8787684-UTR-H-paniculata_contig7596:4343..46101691481517.8787684-UTR-H-paniculata_contig7596:4343..4610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7596 4344..4610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7596.15587.1

>prot_H-paniculata_contig7596.15587.1 ID=prot_H-paniculata_contig7596.15587.1|Name=mRNA_H-paniculata_contig7596.15587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp
MSTMHDGKKLPPGWVKCESSKYPGAFYFFDTQTGKSLWFPPENEGAGQQL
AGRLRGEEGTSPSRSAKRPRPGSRIDAYGSGAVKVAVIVPFRDGDPAQRR
SEHLRKFVPYMESFLRNQRAQVAEFRTFIVEQSADDRKFNRGKLLNIGFD
LARSEGFTAFLFHDVDLLPSEDLGVWYTTTPERPVHIARVWKQYSNNPKY
FGGVVSFNREDFEAINGFPNTFWGWGGEDDEMYSRIVEARRRM*
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mRNA from alignment at H-paniculata_contig7596:159..4610-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7596.15587.1 ID=mRNA_H-paniculata_contig7596.15587.1|Name=mRNA_H-paniculata_contig7596.15587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4452bp|location=Sequence derived from alignment at H-paniculata_contig7596:159..4610- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGTTAGTCAGCCCCCAGCGCCACCAAGCATGTTTGCGTAGATCGCTGTGC TGGACGTGCTCACCCGGGTGGCATCTCAGCTTGGCATCATCATCTACCTT TATTTGGCGTGTTGATAAAATTGGCTTTCTTTCATGTGATCAAGGGAAAC GCAACGCACGCCAAAATATCGCATCTGGAAGTACCAATGAAGCAAATCAT CAATCATCCCTGACCAGATCTACGTACTGTATTACAAACGGTACCCACGG AAGCCTACATAAGCACGATGAGCACCATGCATGATGGAAAGAAGCTGCCG CCGGGATGGGTCAAGTGCGAGTCTTCAAAATACCCCGGAGCTTTCTACTT CTTTGACACTCAAACTGGCAAATCTCTCTGGTTTCCGCCCGAAAATGAGG GCGCGGGGCAGCAGTTAGCAGGTCGACTGCGGGGCGAAGAAGGGACGTCG CCATCCCGCTCGGCGAAGCGCCCGCGGCCCGGCTCTCGCATCGACGCTTA TGGAAGTGGAGCGGTAAAGGTATGTGCCAAGTATGTACTCACCGAATGAT GACAACTGTATGTAATGTCACGCCGCCCCACTGCTGTATGTGCCGGTACA TCCACCTATTTGTACCTCTCTCGAGTTATCTACTGTAATGATCAACGCTT GGAGCCCCGTTCATGCCTGCAGAAGCCTATTAATAGGGAAACGGTGAAAT TGTACGCAAAAAGTGACGCGAGCAAGCAATTAATGCCTCCATATGAACGT TGGATAAACAGATAACAGGCTCTTCGAGAGTGTTCCAACTTCGAAATCAC GTTTTCTTGAAACCCCCTCTTTGGATGTAGCCGGGATGGGGTGCGCGGGG GGGGGGGGGGGGGGGGCATGCTAAGGTGCAGCAGCCCGCACTGACGACTA TTAGTTATATATTATTTCTAGTAGGTATATTTTATACATACCAGCAAAAA TGAATCAGAATGGGGAGGAGGGGATAGAGGCTACGGGCTCCCCTGATTGA ACATGTTATATCAATTTTGCCGACGATGAGATAGTTTCAGGTTCTTAATA GTCGTATTTCATTTTTTTTTTTTCGCAACAAACTGGTAGACGCCGCGATC AGTCATCTTCGCTACACTACATACGACAGCAAGGTACACTGTACTGTTGC AAACCGCAATTAAACAGCGAGAGCTTTGCAACAAACTAGTGTTGAGTTTC CTCTAAACGCTACAGTGGATTGCGCAAATTCCATGCCGAAACCCGATACA AAGATCCTTCCGACTTCACACCCTATGCTGCAATACATGGGTTTGATACG ATGACAAATACCCGTTATGACTCCGCGCACACGAAAATCGTTGCACGTTC TACGAGTTTACTGGTATAGGGGAAATGATATCGTAGAGCCAAACGTTCTC AACATCATCCTCGGACGGCATTTCTTTTTTTTTTAGGGAGGTACATGTGC ATCAATCAGTTGCTGCACACAATGCTTGTGCATGCATGGTCAGGTGGCCG TGATCGTGCCCTTTCGGGACGGCGATCCGGCCCAGAGGCGCTCGGAGCAC CTACGAAAATTTGTCCCGTACATGGAGTCTTTCCTCCGAAACCAGCGCGC CCAAGTCGCGGAGTTTCGCACGTTTATCGTGGAGCAGTCGGCGGACGATC GCAAGTTCAACCGCGGAAAGCTGCTCAATATCGGCTTTGACCTGGCTAGG AGCGAGGGGTTCACAGCATTCTTGTTTCATGACGTGGATCTTCTGCCCTC AGAAGACCTTGGAGTGTGAGTAATCGTAGCAACAGTGAAAGTACTGACTG TACTCACGTACAAAGTTTATGTGTTACCTCCTCAACAGAAAGCACCGATT ACTACCCCTTCAATGTTGGGTAGACCTGCGGTGCTGTGTGTGATGATATC GTGAAAACGAAAATATAGAGGATTTATCGAGCAAGTTCTTTGCGGGAGGG TTTCTGTGTGTACCCACCCAAAGATAACATGCAGAGATGTTGTACTAATT GACGTTGCAATATATATATATATATCAGGAAAAATACTATTATGTGTATG TATACACCTTTTTTTTAACAAACCATATACATGAACATACGAAGAGCAGC TGTACAGGGGTTTTCAAAAGGTGGCAATTAACCTATTGAACAGGGGGGGT TATTCCGGTGTTTTGTTGAGGGGGCAACACAAGTGCGGCTATCGGAAACG GATCCACAGTCTACCTGCGCGCGAGATGAACACGGTGCACGTTTTCTTGT TTTGCGCGATGCGTTTGATGCACTTGGCATGATTAATCGGGTCAACGGCG GCCGCAGCGGCGGCGGCCGGCAAACAAGGCACAGCGAGTACTGACATGGT AACATGGCGCCAGTGACAAATGAAGAAAGCACCGCAAGACTTCAATTATT CTTCGTGTACGACAGACTGATTGCGCTGGGATAGGTTACTAGTATTACTG TTTTACTCGTGACATCGGCAATGGCCGTGAGAGGTGTGACAAGCTGCGGC CGTCCGTCTATGTTATTGGTTCGCCACAACGGACGTGGGGGCAAAAAATC ATGTGCTGTTACTTGGCCAACCAACGTCTTGAAAAAACTAGGACTTGCAC ACTGGAAAGTTGTATGTAGACATTTTTTCGGGGAAAATTATCTGTCTCAG TTTCAGCGTGTCCGGAATGGATGATGGCACATAGAATAAAGTGCTCATCC TCCTCTCTTTATTCGTTTTAATAGTATTTGCTGCAGTCGTAGTAGACGAC AGTCCAAGGCACATGGTATACACGTGCCCATGCTGAGCCTTTCGGTGAGT ACTTTGAAATATTCGTCTGCACCGTTCGAGTTATTCAGTTTTCGTATCCG TGATTGTCTGCGGGTTAAAGAGTTGTATAAATGTTTAAATTATCACCATT TCATTAGAAAATGACATTTGGAGGCATGGACAGACAAAATACTCAATGGG TAAAGTAGCATGACCCTCCATCTCCACAGAACACCAACAGCGTGTGCTAT AGGTGACATACTGTAGAGCTCGTGAGGATGGCAACGCCGTTTCGGTCAAG AATGGGCACTGGTACGCGAAATCTCGATCTAGTAGTAGTAGTAATATTGT CAGTATTACTGATGCTGGCCCAGGTAGTCTTGCGGAGATTTTGGGAGCTT CGAGAAGAATCTTGATATTTCGCTCATGTCATCTATTGGTGTAAACGCCT CTTTTTTGGAAGCTTCCAGAAGAACCTTGACATTTCACGTATGTCATTCA TTGGTGTAAACGCCTCTTTGTACAATATAGAACCTGTAGTAGTGATTTTT TGACAAGATTTGGCGCAAGATTTTACGGCTCCGATATATATATATATATA TATATATATCCAGAATTCGCGACAACCTTGGTTGACTTTCCATTGACTTT CATTCAAGGTGTGCAAAACTGTGAAGAGGGATAGATAAAAGCCATGACCC GCAAATTTTCTGCCTGCGGTGGCGTCTCGAATGAGACCTCCTTATTAAAT TTGAAAGTGCGGTCTAGCTCGCACTGACGAGCCCGCCACGAGTATATACC AGGATATGCAACTGGCTGCTAATATATACTGGTAGATTATTGCTAATCTT TAGCCCTACCTTTCAGAGTGGGCACTGTATGGGAGCCAACCATCTCATTG ACCTCCGCGCAGTACAAGGAAGGCATCAGCACATGAAAGAAAGAGGTTGG TTGGCAGAGGAGCTTTACACAAGGCGGTCGGTTCCCCCCCCCCCCCCTTG AAGTCATAAACGCCCCCAACCCTCCCTCCCCCTCTCGCCGCCCGGGGCTG TTTCTACTGTCTACTGTTTGCTGTTGGCCTGATTTCGTTGTTCTATTCTA TTTTTCTTGTTTGTTGCATGCAGCTGGTACACAACTACTCCGGAGCGACC GGTGCACATCGCGCGCGTTTGGAAGCAGTACAGCAACAACCCCAAGTGAG TGCACCGTGTACATTTTTTGTGACTCCCACCACCACCACCACCACCGCTT CCATGGTAAAGTACAGTACATTAGATTACATTACATTACAGTACGGTACT GTACAATAAGCAGTATCTATCCTGCAGTAGTAATAAACGTCGTTCTTTTT GTTGTTTAGTTCGGTGCGTTGAAAAGACTCAAGGCTGTTTGGCGAAACGA GACATGATGTTATTTGCACAACCACGGGAGGATATTCTCAACACACAACA CTACACGATGTTTATTTAGTCCCCCCTCCTCCCCTCTCCCTTTTCGTTCA TCTCCAATACGACTTTTTTTTTCTTTTTTTCTCACATGTTTCGTTAAACG TGCCGCCGTCACGCAGGTACTTTGGCGGAGTGGTGTCGTTTAACCGAGAA GATTTTGAGGCCATCAACGGATTTCCGAACACCTTCTGGGGGTGGGGTGG CGAAGACGACGAAATGTATAGCCGGATTGTGGAGGCGAGGAGGCGGATGT AG
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Coding sequence (CDS) from alignment at H-paniculata_contig7596:159..4610-

>mRNA_H-paniculata_contig7596.15587.1 ID=mRNA_H-paniculata_contig7596.15587.1|Name=mRNA_H-paniculata_contig7596.15587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig7596:159..4610- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCACCATGCATGATGGAAAGAAGCTGCCGCCGGGATGGGTCAAGTG
CGAGTCTTCAAAATACCCCGGAGCTTTCTACTTCTTTGACACTCAAACTG
GCAAATCTCTCTGGTTTCCGCCCGAAAATGAGGGCGCGGGGCAGCAGTTA
GCAGGTCGACTGCGGGGCGAAGAAGGGACGTCGCCATCCCGCTCGGCGAA
GCGCCCGCGGCCCGGCTCTCGCATCGACGCTTATGGAAGTGGAGCGGTAA
AGATGAGCACCATGCATGATGGAAAGAAGCTGCCGCCGGGATGGGTCAAG
TGCGAGTCTTCAAAATACCCCGGAGCTTTCTACTTCTTTGACACTCAAAC
TGGCAAATCTCTCTGGTTTCCGCCCGAAAATGAGGGCGCGGGGCAGCAGT
TAGCAGGTCGACTGCGGGGCGAAGAAGGGACGTCGCCATCCCGCTCGGCG
AAGCGCCCGCGGCCCGGCTCTCGCATCGACGCTTATGGAAGTGGAGCGGT
AAAGGTGGCCGTGATCGTGCCCTTTCGGGACGGCGATCCGGCCCAGAGGC
GCTCGGAGCACCTACGAAAATTTGTCCCGTACATGGAGTCTTTCCTCCGA
AACCAGCGCGCCCAAGTCGCGGAGTTTCGCACGTTTATCGTGGAGCAGTC
GGCGGACGATCGCAAGTTCAACCGCGGAAAGCTGCTCAATATCGGCTTTG
ACCTGGCTAGGAGCGAGGGGTTCACAGCATTCTTGTTTCATGACGTGGAT
CTTCTGCCCTCAGAAGACCTTGGAGTGTGGCCGTGATCGTGCCCTTTCGG
GACGGCGATCCGGCCCAGAGGCGCTCGGAGCACCTACGAAAATTTGTCCC
GTACATGGAGTCTTTCCTCCGAAACCAGCGCGCCCAAGTCGCGGAGTTTC
GCACGTTTATCGTGGAGCAGTCGGCGGACGATCGCAAGTTCAACCGCGGA
AAGCTGCTCAATATCGGCTTTGACCTGGCTAGGAGCGAGGGGTTCACAGC
ATTCTTGTTTCATGACGTGGATCTTCTGCCCTCAGAAGACCTTGGAGTCT
GGTACACAACTACTCCGGAGCGACCGGTGCACATCGCGCGCGTTTGGAAG
CAGTACAGCAACAACCCCAACTGGTACACAACTACTCCGGAGCGACCGGT
GCACATCGCGCGCGTTTGGAAGCAGTACAGCAACAACCCCAAGTACTTTG
GCGGAGTGGTGTCGTTTAACCGAGAAGATTTTGAGGCCATCAACGGATTT
CCGAACACCTTCTGGGGGTGGGGTGGCGAAGACGACGAAATGTATAGCCG
GATTGTGGAGGCGAGGAGGCGGATGTAGGTACTTTGGCGGAGTGGTGTCG
TTTAACCGAGAAGATTTTGAGGCCATCAACGGATTTCCGAACACCTTCTG
GGGGTGGGGTGGCGAAGACGACGAAATGTATAGCCGGATTGTGGAGGCGA
GGAGGCGGATGTAG
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