mRNA_H-paniculata_contig7572.15558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7572.15558.1 vs. uniprot
Match: D7FWC6_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC6_ECTSI) HSP 1 Score: 341 bits (874), Expect = 3.650e-101 Identity = 196/388 (50.52%), Postives = 253/388 (65.21%), Query Frame = 1
Query: 1 AVHRRLLADAQIIFHDKRSSSRQAAVQTLVRLVGRLAVVHGADDIQAVVEKLHAPLSSRSGVDAIVTDLDPKVPKLMEFLRLRSLRPGFGKLPLVSVAVVIDPNDPRPDLLASALENGVDAVLRRPLDTALITTGLGEVLRRHANIEFVYKDVVGEVETFNYPRFVMEGFHFLGTSESSL---SATDGDGGFSETMGGAVRMYTMQASTPRNGYSVTTVGSGGGCWVQESAAMATAKGDHPGQYSIVVPAFSTAASSSEENRPQSRSELPANSITEGVEAEGAGAVGYGSLLPSNVAKMMGKANIFSVLQRGRAKLSHPSLRPRLYLSPGEKGYVGG--ATVGEVTGTEEFMVEDEHTCTDVWRGIARMHIWADCPSERVDHNNTRVD 1149
A H+RLLA++ I+FHDKRSSSRQ A Q +VRLVGRLAVV GADDI AVVEKLH P +SRSGV+AI+TDLDPK+PKLME LRLRSLRPG GKLP+VSV VV+DP+D RP+LLASA+E+GVDAV+RRPL+ + T+ +GEVLR+HA++EFVYKDVVGEVETFNYPRF++EGFHFLG E+ +GD F+E G AVR YT +AST SVTTVG+GG W Q+ + + G + GQ +P + + T +A G G+ S + A+MMGK + + ++ G K++ PSLRPRLYL G+KGYVGG +T+ T + + C++ G + +R + T VD
Sbjct: 62 AAHKRLLAESLIVFHDKRSSSRQLATQIMVRLVGRLAVVQGADDIIAVVEKLHVPHASRSGVNAIITDLDPKIPKLMESLRLRSLRPGLGKLPIVSVIVVVDPDDLRPELLASAIESGVDAVIRRPLERSSFTSCVGEVLRKHASVEFVYKDVVGEVETFNYPRFLLEGFHFLGVGETGSVGGGVGEGDSTFNEIAGDAVRTYTKEASTGSGNGSVTTVGTGG--WAQDG--IVSPNGGNAGQSEAPLP---------------TPXXXXXXASTTATDATGFGSAARKSSRQAATARMMGKTKVLTTMRGGHVKITSPSLRPRLYLYTGDKGYVGGGGSTMNANTDSRDGGKRSSAGCSNGGVGGSXXXXXXXGDRDRQNQGGTEVD 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7572.15558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7572.15558.1 >prot_H-paniculata_contig7572.15558.1 ID=prot_H-paniculata_contig7572.15558.1|Name=mRNA_H-paniculata_contig7572.15558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=450bp AVHRRLLADAQIIFHDKRSSSRQAAVQTLVRLVGRLAVVHGADDIQAVVEback to top mRNA from alignment at H-paniculata_contig7572:5888..11130+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7572.15558.1 ID=mRNA_H-paniculata_contig7572.15558.1|Name=mRNA_H-paniculata_contig7572.15558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5243bp|location=Sequence derived from alignment at H-paniculata_contig7572:5888..11130+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7572:5888..11130+ >mRNA_H-paniculata_contig7572.15558.1 ID=mRNA_H-paniculata_contig7572.15558.1|Name=mRNA_H-paniculata_contig7572.15558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2700bp|location=Sequence derived from alignment at H-paniculata_contig7572:5888..11130+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |