mRNA_H-paniculata_contig75570.15543.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75570.15543.1
Unique NamemRNA_H-paniculata_contig75570.15543.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5KVG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVG7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.840e-20
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:   10 RTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            ++Q V A  TTEAE +A  E V E LF+R V +F+ P      + ++EDNQ A  +  N  SS R++HIDV+   +R+  ++G++ + YV  +EQHAD+LTKAL
Sbjct:   18 KSQRVVALSTTEAEYIAAGEGVKEALFVRAVLSFVAPETSWASIQVREDNQGAMTLVQNPLSSARSKHIDVRFHFIRELFKSGRISVEYVSTDEQHADLLTKAL 121
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.290e-20
Identity = 49/106 (46.23%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKA 318
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HIDV+H  +R+ VE  ++ I +V  E QHAD LTKA
Sbjct:  189 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKA 294
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5KL46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL46_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.780e-20
Identity = 46/107 (42.99%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++ IDV+HR++R+ VE  ++ + +V  +  HAD LTKA+
Sbjct:   47 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKRIDVRHRLIRELVERKEISMTHVPTQFWHADFLTKAI 153
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.220e-20
Identity = 49/107 (45.79%), Postives = 72/107 (67.29%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HIDV+H  +R+ VE  ++ I +V  E QHAD LTKA+
Sbjct: 1350 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 1456
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 8.020e-20
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDN    ++AHN  ++  ++HIDV+H  +R+ VE  ++ I +V  E QH D LTKA+
Sbjct:   47 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAI 153
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.780e-20
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HIDV+H  +R+ VE  ++ I +V    QHAD LTKA+
Sbjct:  316 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-19
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HID +H ++R  VE  ++ I +V  E QHAD LTKA+
Sbjct:  171 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAI 277
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BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-19
Identity = 46/102 (45.10%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   16 QEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            Q+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HIDV+H  +R+ VE  ++ I +V  E QHAD LTKA+
Sbjct:    2 QKYVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 103
[Close]
BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.660e-19
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + EDNQ A ++AHN  ++  ++HIDV+H  +R+ VE  ++ I  V    QHAD LTKA+
Sbjct:  199 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305
[Close]
BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.810e-19
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:    1 WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIKEDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHADVLTKAL 321
            W +RTQ+     TTEAE VA+A+++ E LFLRQV  F++P  G   + + E+NQ A ++AHN  +   ++HIDV+H  +R+ VE  ++ I +V  E QHAD LTKA+
Sbjct: 1309 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFENNQGAIQIAHNPTTKSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 1415
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75570.15543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVG7_9PHAE1.840e-2043.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K684_9PHAE2.290e-2046.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL46_9PHAE2.780e-2042.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE5.220e-2045.79Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JTT9_9PHAE8.020e-2042.99Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE8.780e-2044.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K2_9PHAE1.080e-1944.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH6_9PHAE1.270e-1945.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.660e-1944.86Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK7_9PHAE1.810e-1944.86Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75570contigH-paniculata_contig75570:214..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog42099.EPrPV00000023519
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs1MIKP@121069,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.1613607-CDS-H-paniculata_contig75570:213..5341622930929.1613607-CDS-H-paniculata_contig75570:213..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75570 214..534 -
1691481514.8294427-CDS-H-paniculata_contig75570:213..5341691481514.8294427-CDS-H-paniculata_contig75570:213..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75570 214..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75570.15543.1prot_H-paniculata_contig75570.15543.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75570 214..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75570.15543.1

>prot_H-paniculata_contig75570.15543.1 ID=prot_H-paniculata_contig75570.15543.1|Name=mRNA_H-paniculata_contig75570.15543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
WHARTQEVTAAGTTEAENVALAEMVNEELFLRQVQAFIMPTLGHYPVIIK
EDNQVAEKMAHNKRSSRRARHIDVKHRIVRDAVETGKVDIVYVGVEEQHA
DVLTKAL
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mRNA from alignment at H-paniculata_contig75570:214..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75570.15543.1 ID=mRNA_H-paniculata_contig75570.15543.1|Name=mRNA_H-paniculata_contig75570.15543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig75570:214..534- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCACGCAAGAACTCAAGAGGTGACAGCGGCGGGGACAACAGAAGCCGA
GAACGTGGCGTTGGCGGAGATGGTGAACGAAGAACTGTTTCTGCGCCAAG
TACAAGCCTTCATAATGCCAACGCTGGGACACTACCCCGTAATTATTAAG
GAAGACAATCAAGTAGCCGAAAAGATGGCCCACAACAAACGCAGCAGTCG
GAGGGCGCGTCACATCGACGTGAAGCACCGCATTGTTCGCGATGCGGTTG
AGACTGGGAAGGTTGACATAGTGTATGTGGGGGTGGAAGAACAGCACGCG
GATGTACTCACGAAGGCGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig75570:214..534-

>mRNA_H-paniculata_contig75570.15543.1 ID=mRNA_H-paniculata_contig75570.15543.1|Name=mRNA_H-paniculata_contig75570.15543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig75570:214..534- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCACGCAAGAACTCAAGAGGTGACAGCGGCGGGGACAACAGAAGCCGA
GAACGTGGCGTTGGCGGAGATGGTGAACGAAGAACTGTTTCTGCGCCAAG
TACAAGCCTTCATAATGCCAACGCTGGGACACTACCCCGTAATTATTAAG
GAAGACAATCAAGTAGCCGAAAAGATGGCCCACAACAAACGCAGCAGTCG
GAGGGCGCGTCACATCGACGTGAAGCACCGCATTGTTCGCGATGCGGTTG
AGACTGGGAAGGTTGACATAGTGTATGTGGGGGTGGAAGAACAGCACGCG
GATGTACTCACGAAGGCGCTGTGGCACGCAAGAACTCAAGAGGTGACAGC
GGCGGGGACAACAGAAGCCGAGAACGTGGCGTTGGCGGAGATGGTGAACG
AAGAACTGTTTCTGCGCCAAGTACAAGCCTTCATAATGCCAACGCTGGGA
CACTACCCCGTAATTATTAAGGAAGACAATCAAGTAGCCGAAAAGATGGC
CCACAACAAACGCAGCAGTCGGAGGGCGCGTCACATCGACGTGAAGCACC
GCATTGTTCGCGATGCGGTTGAGACTGGGAAGGTTGACATAGTGTATGTG
GGGGTGGAAGAACAGCACGCGGATGTACTCACGAAGGCGCTG
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