mRNA_H-paniculata_contig7557.15542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7557.15542.1
Unique NamemRNA_H-paniculata_contig7557.15542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.840e-74
Identity = 153/410 (37.32%), Postives = 224/410 (54.63%), Query Frame = 1
Query:   22 LQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPVS---TLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGF-SPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIA-GRREKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            ++  +A K + A + E+ +L  N TWE      LP G KAI  K +FK K    G +  YKARL++                PV+   ++RI+ S+AA++   L  MDV  A+LN  +EEE+++K   GF    + D   V +L+++LYGLKQS   WN T+D F+  IG  +  TD C+Y  RDD  +  + V +YVDDL +A    + +   K  +S+RF M DLG L   LG+EV RD  +G +++ Q  ++  VL  +G  +C+ V TP +  +K++           ++         YRS VG +MY   G RPD+A AV   ++   DPC   +   KR+ RYL   P  GI F G  +G  L  + DA+WA D+E R+ST+GYVF LNGG I+W S+KQ+ V
Sbjct:    1 MESSDASKWKEACESEFESLCKNKTWELV---PLPRGRKAISSKWVFKVKETVEGLIERYKARLVAKGFLQKYGVDFEETFAPVAKFASIRIILSIAAQYKLVLHQMDVKTAFLNGLLEEEIYMKQPNGFVDAKYPD--HVCKLKRALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDD--KAMIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTM----QGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTV 398          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 259 bits (663), Expect = 1.530e-73
Identity = 166/424 (39.15%), Postives = 231/424 (54.48%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPVSTL---RIVFSLAAEHDFELEDMDVDAAYLNAPVEEELF------VKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGR-REKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLE--EFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P +  EA   PE E  R A++EE   L DN  +E+     +P+G K I  K + + K  +NG +  YK R+++                PV+ L   RI+ +LAA +D EL+ MDV AAYLN  ++EEL+      V + PG            RL++SLYGLKQ+G  WN TLD  L G+G +R  +++CLY  RDD G+   LV VYVDDL +A   R  +DE K  ++ +F+M+DLG  S +LGI +RRDRP   I +SQR YI  VL  YG  +C+   TP+   VK SA    D  +  +S    G S  Y S++G +MYA  G RPDIAY V    R   +P R  +   KR  RYL    D+ + F G      ++   + DA+W+ D +  +ST+G+VF  N GAI W S++Q  V
Sbjct:  983 PSTLREAFSTPEGEHWRAALEEELQNLRDNCVYETV---PIPSGVKPITSKPVLRVKFDKNGGIERYKIRIVARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYLMPPDGVAIEPGH---------CWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTL-HSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWSGDRDTSRSTSGFVFISNRGAIGWSSKRQSLV 1392          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 250 bits (639), Expect = 2.460e-73
Identity = 150/417 (35.97%), Postives = 240/417 (57.55%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPV---STLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVK-ISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P + +EAL GP AE+   AM++E  +L ++  WE      LP   KA+G K +FK K   +GS+  +KARL++                PV    ++R V +L+ +   +L  MDV AA+LN  +E+E+++K   GF    ++     +L KSLYGLKQS   WN+ LD  L  IG  ++ +D C+Y   +DG     +VA++VDD+ +AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q  Y   ++K YG + C+ V TPV+   K +SA + ++            N  +++S VG L+Y S+  RPDI +AV+  A+   +P  + ++  KRIFRYL    + G+ +   +N   +  F DA+WA D+ DRKST+GY F++NG A+SW S+KQ  V
Sbjct:  146 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELT---ELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSEL----------FNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCV 543          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 256 bits (653), Expect = 3.250e-72
Identity = 154/415 (37.11%), Postives = 236/415 (56.87%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS-----------------LKPVSTLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRREKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P+S  EA+Q P+  + + A+++E   L D+ T++   P   P     +G K +F+ K   NG +  YKARL++                 +  ++++RI+ +LAA HD+++  MDV  AYLNA +EEE+F+K  PG +   ++  +V  LR ++YGLKQSG  W   +   L  +GL RS+ D C+++  +D     L++A+ VDD  IAG    V  FK  IS+RF M DLG +  +LGIEVRRDR   T+++SQR YI  ++  +  ++ + + TP+E    +S  +    PS P       N   YR  +G LMYA+ G RPDIA+AV   ++ M++P R  +   KR+ RYL +  +  +T+G   NG  +E F DA+W    E R S  GYVF ++GGA+SW ++KQ  V
Sbjct:  960 PRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEP---PENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKE-HWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQC---PSTPREFEDMRN-VPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYGLTRNG--VEGFSDADWGSS-EHRHSICGYVFLIDGGAVSWSAKKQPVV 1363          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 254 bits (650), Expect = 8.480e-72
Identity = 158/417 (37.89%), Postives = 228/417 (54.68%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS----------------LKPVSTL---RIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRREKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P++  EA Q P+  + + A+  E+  L  +  ++   P   P     +G K +F+ K    G+V+ +KARL++                  PVS L   R + SLAA HD+EL  MDV +AYLN  +EE ++++L PGF+P  +    V RL+K+LYGLKQ+G  W  TL   +  +G  R + D  +++ R+  GE+ ++VA  VDDL I G  + VD F  +I QRF M DLG L  +LGIEVRRDR   TI ISQR YI  ++  +  DE   +  P++    +   +S   P +            YR  VG LMYA+ G RPDI +AV   ++ M++P R  +   KR+ RYL    +L + +G  +N  GL  + DA+W    E R S +GYVF L+GGAISW S+KQ  V
Sbjct: 1028 PRTLEEARQSPDWPQWQRAIDAEYDNLRRHDVFDLVEP---PPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQS-HLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYKRE--GESAIIVAASVDDLTITGTSDLVDAFAVDIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDM----RDVPYREAVGSLMYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYG--TNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVV 1432          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 253 bits (647), Expect = 1.710e-71
Identity = 156/417 (37.41%), Postives = 229/417 (54.92%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPV---STLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRRE-KVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVE-GRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P++  EALQG  A+  + +M+ E+ AL+ N TW       LPAG K IG K +F+ K  +NG +  +K+RL++                PV    T+R++F++AAE    +  +D+  AYLN+ ++EE++++    F         V +L+K++YGLKQSG  WNNTLD  L  +G  RS  ++CLY  +   G +   +AVYVDDL I    E ++   K  IS +F M D G LS  LG+E++RD   G +++ Q+ YIR +LK YG   CR V TP++ G +      S  K           N T Y+S++G LMY +  +RPDI +AV + ++R  +P  +  +  K I RYLS   +L I +  +  G  +  F DA+WA D  DRKS +GY F L G A SW S KQ  V
Sbjct:  818 PQTVTEALQGEYAQNWQESMRSEYNALLSNDTWSLV---DLPAGAKTIGSKWVFRIKRDKNGEIERFKSRLVAKGCGQQFGVNYWETFSPVIRYETIRMLFAIAAEKQLFMHQIDISNAYLNSSLDEEVYMRQPQNFISTEHPNK-VLKLKKAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSS--YIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKV----------NVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIV 1216          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A0C9RAA9_9HYME (POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9RAA9_9HYME)

HSP 1 Score: 247 bits (630), Expect = 2.540e-71
Identity = 151/414 (36.47%), Postives = 229/414 (55.31%), Query Frame = 1
Query:   16 EALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLI--------------SLKPV---STLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRREKVDE-FKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKIS---APKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            EAL  PEA+  + AMKEE  +   N TW      +LP G +AI  K +FK K    G++  YKARL+              +  PV   ++LR +F++AA+HD  +  +D   A+LN  ++EE+F+K   G+S    +   V RL KSLYGLKQ+   WN+ L+  L+ +GL RS  D C+YF   +     + VA+YVDD+ +    +K  +  K+ +S + +MKD+G  S VLG+ V+RD     I + Q  YI  VLK +G D+C  V TP++   K++    PKS ++        +      Y   VG L+YA+   RPDI++AV+  +R  ++P +  +   KR+ RYL    + GI F  + +   L  + DA+WA D++ R+ST+GYVF + G AISW S +Q+ V
Sbjct:  238 EALNSPEADDWKRAMKEEIESHKTNRTWVLT---KLPEGKRAINTKWVFKTKRNAEGALVRYKARLVVKGCSQKQGVDYSETFSPVVRYNSLRFLFAMAAKHDLSVHQLDAVTAFLNGELQEEVFMKQPEGYSD---NSGRVCRLLKSLYGLKQASKVWNDKLNEVLISLGLIRSEVDQCIYFCVSEYSM--VYVAIYVDDVLVFSNDKKATQRIKNELSSKIKMKDMGSASSVLGMRVQRDEVKKLIKLDQSEYISSVLKRFGMDDCNAVATPLDLSQKLTLDMCPKSEEEK-------KEMEKVPYMEAVGSLLYAAQNTRPDISFAVNLLSRFSQNPGKGHWLALKRVMRYLKGTVNKGIVF--RKSAQSLTGYCDADWAGDLDQRRSTSGYVFIMQGAAISWSSHRQRTV 634          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 252 bits (644), Expect = 3.780e-71
Identity = 152/417 (36.45%), Postives = 240/417 (57.55%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPV---STLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRR-EKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVK-ISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P + +EAL GP AE+   AM++E  +L ++  WE      LP   KA+G K +FK K   +GS+  +KARL++                PV     +R V +L+ +   +L  MDV AA+LN  +E+E+++K   GF    ++   V +L KSLYGLKQS   WN+ LD  L  IG  ++ +D C+Y   +DG     +VA++VDD+ +AG+  EK+ + K +I++RF++KD+G L  +LG++V ++  +  + I Q  Y   ++K YG + C+ V TPV+   K +SA + ++            N  +Y+S VG L+Y S+  RPDI +AV+  A+   +P  + ++  KRIFRYL    + G+ +   +N   +  F DA+WA D+ DRKST+GY F++NG A+SW S+KQ  V
Sbjct:  760 PTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELT---ELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKE-HLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSEL----------FNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCV 1157          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A6S7JEY7_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JEY7_PARCT)

HSP 1 Score: 244 bits (623), Expect = 3.970e-71
Identity = 150/416 (36.06%), Postives = 233/416 (56.01%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPVS---TLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRRE-KVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFV 1194
            P++  EAL  P+  K   AM++E  +L  N  W       LP   KA+G K +F+ K   +G+V  +KARL++                PV+   ++R V +LAA+H  +L  MDV  A+LN  ++EE+++K   GF    ++   V RLR+S+ GLKQS   WN+ LD  L  +G  ++  D C+Y  +++GGE   ++AVYVDD+ +AG+ + K++E K  ++++F+MKD+G     LG++V +   +  I I Q  Y + VL+ +G +  +   TPV    K+   K+AD   + +         +Y+  VG L+Y ST  RPDIAYAV   AR    P  + +   KRI RYL+   D+G+ + G         + DA+WA D++DRKST+GYVF+++  AISW S+KQ  V
Sbjct:  130 PRTVKEALSSPQKTKWVKAMEKEMESLKTNEVWNLV---ELPENRKAVGSKWVFRVKTDADGTVETHKARLVAQGFSQTFGDDYDETFSPVARFESVRTVIALAAQHGLKLHQMDVTTAFLNGDLKEEVYMKQPEGFIDKGKE-HLVCRLRRSICGLKQSPRCWNSVLDRKLKNMGFVQTTGDPCIYV-KEEGGEI-FIIAVYVDDILLAGKNDQKINEVKQALAEQFQMKDMGQRHYFLGVKVIQKPDSKEIWIGQEAYTKSVLERFGMESSKPASTPVNPGTKLK--KAADDSQRVDQ-------VNYQCAVGHLLYLSTKTRPDIAYAVSDVARFSAHPTEEHWIAVKRIMRYLNGTRDMGLLYDGSKTTTSCVGYSDADWAGDLDDRKSTSGYVFQISNAAISWRSKKQSCV 530          
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 241 bits (615), Expect = 5.440e-71
Identity = 150/425 (35.29%), Postives = 228/425 (53.65%), Query Frame = 1
Query:    1 PKSAAEALQGPEAEKCRVAMKEEWGALVDNGTWESEYPWRLPAGWKAIGRK*IFKRKLKENGSVACYKARLIS--------------LKPV---STLRIVFSLAAEHDFELEDMDVDAAYLNAPVEEELFVKLSPGFSPFFRDIP-FVRRLRKSLYGLKQSGCNWNNTLDVFLVGIGLDRSITDSCLY---FSRDDGGETDLLVAVYVDDLF-IAGRREKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREVLKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMVGLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLGITF----GGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQFVT 1197
            P+S +EAL G  A K + A+KEE+ +L+ N TWE   P   P G   IG K + K K   +G+V  +KARL++                PV   S++R + +LA +H+ E+  MDV  A+LN  +E ++++    GF    ++ P +V +L+KSLYGLKQS   WN TLD FL   G  +S  D+C+Y      D+G  + +++AVYVDD+  I+     ++  K  + + F M D G +  +LG+ ++RDR   T+ ISQ+ Y+  VL  +G   C+ + TP+E               K        +   Y+  +G L Y ST  RPDI+ AV   +  M +P ++ ++  KR+ RY+    + G+ F        NG  L  + DANWA DV+ R+ST+GYVFK+    +SWCS+KQ  VT
Sbjct:   14 PQSISEALNGANASKWKQALKEEYNSLISNETWELVPP---PEGCNVIGSKWVMKIKRDADGNVDRHKARLVAQGYSQTPGINYEEVFSPVARHSSIRTLLALANKHNLEIHQMDVKTAFLNGYIEHDIYMSQPDGFVD--QEHPEYVCKLKKSLYGLKQSARCWNQTLDSFLTKNGYRKSNADNCIYVKSIKNDNGFISFVILAVYVDDIIPISNDINMLNTEKDLLCKHFEMTDQGEIHFILGMTIKRDRETKTLFISQQRYLESVLDRFGMANCKPISTPLETTYH-----------KRTEEEEGFDKNLYQQAIGRLTYISTATRPDISAAVSILSSYMSNPSKEHWNGVKRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVT 422          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7557.15542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6YB57_9STRA1.840e-7437.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VT18_TRAPU1.530e-7339.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HZ03_PARCT2.460e-7335.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GQU1_9APHY3.250e-7237.11Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A2G8RWY5_9APHY8.480e-7237.89Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
W8BWJ0_CERCA1.710e-7137.41Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C9RAA9_9HYME2.540e-7136.47POLX_4 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A6S7HEL0_PARCT3.780e-7136.45Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7JEY7_PARCT3.970e-7136.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9JFU5_PARCT5.440e-7135.29Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7557contigH-paniculata_contig7557:10046..11326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.9
Seed ortholog evalue5.3e-50
Seed eggNOG ortholog164328.Phyra85518
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1200
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7557.15542.1prot_H-paniculata_contig7557.15542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7557 10367..11326 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.010062-UTR-H-paniculata_contig7557:10045..102581622930929.010062-UTR-H-paniculata_contig7557:10045..10258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7557 10046..10258 +
1691481514.7935-UTR-H-paniculata_contig7557:10045..102581691481514.7935-UTR-H-paniculata_contig7557:10045..10258Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7557 10046..10258 +
1622930929.0267267-UTR-H-paniculata_contig7557:10291..103661622930929.0267267-UTR-H-paniculata_contig7557:10291..10366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7557 10292..10366 +
1691481514.803813-UTR-H-paniculata_contig7557:10291..103661691481514.803813-UTR-H-paniculata_contig7557:10291..10366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7557 10292..10366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930929.0570364-CDS-H-paniculata_contig7557:10366..109201622930929.0570364-CDS-H-paniculata_contig7557:10366..10920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7557 10367..10920 +
1691481514.8125184-CDS-H-paniculata_contig7557:10366..109201691481514.8125184-CDS-H-paniculata_contig7557:10366..10920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7557 10367..10920 +
1622930929.1016881-CDS-H-paniculata_contig7557:10968..113261622930929.1016881-CDS-H-paniculata_contig7557:10968..11326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7557 10969..11326 +
1691481514.8202972-CDS-H-paniculata_contig7557:10968..113261691481514.8202972-CDS-H-paniculata_contig7557:10968..11326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7557 10969..11326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7557.15542.1

>prot_H-paniculata_contig7557.15542.1 ID=prot_H-paniculata_contig7557.15542.1|Name=mRNA_H-paniculata_contig7557.15542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp
MDVDAAYLNAPVEEELFVKLSPGFSPFFRDIPFVRRLRKSLYGLKQSGCN
WNNTLDVFLVGIGLDRSITDSCLYFSRDDGGETDLLVAVYVDDLFIAGRR
EKVDEFKHNISQRFRMKDLGYLSRVLGIEVRRDRPNGTINISQRCYIREV
LKGYGFDECRGVPTPVEGRVKISAPKSADKPSKPNSRGRSGNSTDYRSMV
GLLMYASTGARPDIAYAVHQAARRMEDPCRQDFSTCKRIFRYLSTVPDLG
ITFGGKSNGHGLEEFVDANWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQ
FVT*
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mRNA from alignment at H-paniculata_contig7557:10046..11326+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7557.15542.1 ID=mRNA_H-paniculata_contig7557.15542.1|Name=mRNA_H-paniculata_contig7557.15542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1281bp|location=Sequence derived from alignment at H-paniculata_contig7557:10046..11326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAAATCCGCGGCAGAAGCATTACAGGGTCCAGAGGCTGAAAAATGTCG CGTGGCAATGAAGGAAGAATGGGGGGCGTTGGTGGATAATGGAACATGGG AAAGCGAATACCCGTGGAGGTTACCGGCAGGGTGGAAGGCGATTGGTAGG AAATAGATTTTCAAGCGGAAACTGAAGGAGAACGGCAGCGTGGCATGCTA CAAAGCGCGACTGGTGGCTCAAGGATTTCCCAGGTGGAGGGTGAAGATTT CTTTGAAACCAGTGTCGACGTTACGTATTGTTTTTAGCCTGGCCGCTGAA CATGATTTCGAACTAGAAGATATGGACGTAGATGCGGCGTATTTGAACGC CCCGGTAGAAGAAGAGCTGTTTGTTAAGCTATCCCCCGGGTTTTCCCCTT TCTTCCGAGACATACCTTTTGTGCGTCGCCTGCGTAAAAGCCTGTATGGC CTCAAGCAGAGCGGCTGTAACTGGAATAACACTCTTGACGTTTTTCTTGT TGGGATAGGACTCGACCGTTCCATTACCGACTCATGCTTGTACTTTTCTC GTGACGATGGGGGAGAGACAGACCTTCTGGTGGCCGTGTATGTTGACGAC CTGTTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTCAAGCATAACAT AAGTCAGCGTTTTAGAATGAAAGACTTGGGCTATCTTTCACGCGTGTTGG GAATAGAAGTACGACGTGACCGCCCGAATGGTACCATAAACATCTCGCAG AGATGCTACATCCGCGAGGTACTAAAAGGATACGGTTTTGACGAGTGTCG AGGGGTGCCCACCCCTGTAGAGGGAAGAGTGAAGATTTCGGCACCCAAGT CGGCCGACAAGCCCTCCAAACCGAAGTCACTTGGAGTCGTACTGTCGGAC ATAGGCGCAGGAGTACAAGCAAGCAGCAGAGGGAGAAGTGGCAATTCAAC TGACTACAGAAGCATGGTTGGATTACTCATGTATGCCTCGACAGGAGCTA GACCTGATATAGCATACGCAGTACACCAAGCAGCACGTCGTATGGAGGAC CCATGTCGGCAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAG TACTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACG GTCTGGAAGAATTCGTTGATGCTAATTGGGCGGAAGATGTCGAGGACCGA AAGTCCACAACAGGATACGTTTTCAAACTAAACGGTGGTGCGATAAGTTG GTGCTCTAGGAAGCAACAGTTTGTCACGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7557:10046..11326+

>mRNA_H-paniculata_contig7557.15542.1 ID=mRNA_H-paniculata_contig7557.15542.1|Name=mRNA_H-paniculata_contig7557.15542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig7557:10046..11326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGCTGTT
TGTTAAGCTATCCCCCGGGTTTTCCCCTTTCTTCCGAGACATACCTTTTG
TGCGTCGCCTGCGTAAAAGCCTGTATGGCCTCAAGCAGAGCGGCTGTAAC
TGGAATAACACTCTTGACGTTTTTCTTGTTGGGATAGGACTCGACCGTTC
CATTACCGACTCATGCTTGTACTTTTCTCGTGACGATGGGGGAGAGACAG
ACCTTCTGGTGGCCGTGTATGTTGACGACCTGTTCATTGCTGGCCGTCGT
GAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGAATGAA
AGACTTGGGCTATCTTTCACGCGTGTTGGGAATAGAAGTACGACGTGACC
GCCCGAATGGTACCATAAACATCTCGCAGAGATGCTACATCCGCGAGGTA
CTAAAAGGATACGGTTTTGACGAGTGTCGAGGGGTGCCCACCCCTGTAGA
GGGAAGAGTGAAGATTTCGGCACCCAAGTCGGCCGACAAGCCCTCCAAAC
CGAAATGGACGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAGAAGAGC
TGTTTGTTAAGCTATCCCCCGGGTTTTCCCCTTTCTTCCGAGACATACCT
TTTGTGCGTCGCCTGCGTAAAAGCCTGTATGGCCTCAAGCAGAGCGGCTG
TAACTGGAATAACACTCTTGACGTTTTTCTTGTTGGGATAGGACTCGACC
GTTCCATTACCGACTCATGCTTGTACTTTTCTCGTGACGATGGGGGAGAG
ACAGACCTTCTGGTGGCCGTGTATGTTGACGACCTGTTCATTGCTGGCCG
TCGTGAGAAAGTAGACGAGTTCAAGCATAACATAAGTCAGCGTTTTAGAA
TGAAAGACTTGGGCTATCTTTCACGCGTGTTGGGAATAGAAGTACGACGT
GACCGCCCGAATGGTACCATAAACATCTCGCAGAGATGCTACATCCGCGA
GGTACTAAAAGGATACGGTTTTGACGAGTGTCGAGGGGTGCCCACCCCTG
TAGAGGGAAGAGTGAAGATTTCGGCACCCAAGTCGGCCGACAAGCCCTCC
AAACCGAACAGCAGAGGGAGAAGTGGCAATTCAACTGACTACAGAAGCAT
GGTTGGATTACTCATGTATGCCTCGACAGGAGCTAGACCTGATATAGCAT
ACGCAGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTCGGCAAGAC
TTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCT
CGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGAATTCG
TTGATGCTAATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGA
TACGTTTTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCA
ACAGTTTGTCACGTAGCAGCAGAGGGAGAAGTGGCAATTCAACTGACTAC
AGAAGCATGGTTGGATTACTCATGTATGCCTCGACAGGAGCTAGACCTGA
TATAGCATACGCAGTACACCAAGCAGCACGTCGTATGGAGGACCCATGTC
GGCAAGACTTCAGTACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTG
CCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGA
AGAATTCGTTGATGCTAATTGGGCGGAAGATGTCGAGGACCGAAAGTCCA
CAACAGGATACGTTTTCAAACTAAACGGTGGTGCGATAAGTTGGTGCTCT
AGGAAGCAACAGTTTGTCACGTAG
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