mRNA_H-paniculata_contig75256.15508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75256.15508.1
Unique NamemRNA_H-paniculata_contig75256.15508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: D7G375_ECTSI (Glutaredoxin glutaredoxin/malate transporter fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G375_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.700e-19
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 SWVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPIT--LHKVNHDND 204
            SW+A   D E + P+W++MPV NL+GA AA +V+ DY EWGW+L+G G LLWLALWPIT  +   NH +D
Sbjct:  487 SWIAIRRDQEFVNPTWILMPVGNLVGAMAARAVDGDYAEWGWYLFGVGALLWLALWPITFLMSIDNHHSD 556          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: A0A6H5K278_9PHAE (Hemerythrin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K278_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.530e-19
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    1 SWVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHKV--NHDND 204
            SW+A   D E + P+W++MPV NL+GA AA  V+ DY EWGW+L+G G LLWLALWPIT      NH +D
Sbjct:   99 SWIAIRRDQEFVNPTWILMPVGNLVGAMAARVVDGDYVEWGWYLFGVGALLWLALWPITFFMSIDNHHSD 168          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: A0A0L0FQJ1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQJ1_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 1.540e-9
Identity = 25/61 (40.98%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    4 WVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHK 186
            W+    D EHI  +W+I+PV N + +A   S +P+++E+G +L+G  +L+WL L+ ITL K
Sbjct:  595 WIGRSHDWEHIDHTWLIVPVGNFITSAVLVSGDPEFFEFGLYLFGFALLMWLMLFAITLQK 655          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: A8HU96_CHLRE (Glutaredoxin/malate transporter fusion protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8HU96_CHLRE)

HSP 1 Score: 57.4 bits (137), Expect = 6.550e-8
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 SWVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHK 186
            SWVA   + EH+  SWM+MPV+N + AA    ++  Y +   F +   +L+W+AL+ ITL+K
Sbjct:  505 SWVALKKEIEHVNASWMLMPVANFVSAAVGPMLDTHYRDAMQFWFAFAILMWVALFTITLYK 566          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: A0A2J8AAD0_9CHLO (Glutaredoxin-C6 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AAD0_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 5.850e-7
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    4 WVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHK--VNHDNDD 207
            W+A+  + EH+  SWM+MPV+N + AA    ++  Y +     +   +LLW+AL+ ITL+K  V  D DD
Sbjct:  500 WIAAKKELEHVNASWMMMPVANFVAAAVGPMLDSAYRDAMQLWFAFALLLWVALFAITLYKAFVMPDYDD 569          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: UPI001E29843E (SLAC1 anion channel family protein n=1 Tax=Ornithinimicrobium sp. EGI L100131 TaxID=2904603 RepID=UPI001E29843E)

HSP 1 Score: 52.0 bits (123), Expect = 4.860e-6
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1
Query:    1 SWVASP-VDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHKV 189
            +W A P +    + P+W I  V N++   AA  V     E GWF +G GV+ WLAL P+ LH+V
Sbjct:  124 AWFARPDISVAVVTPAWFIPVVGNVVTPLAAREVGD--VELGWFAFGIGVVFWLALLPVLLHRV 185          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: A0A150GBZ6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GBZ6_GONPE)

HSP 1 Score: 51.6 bits (122), Expect = 7.160e-6
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    4 WVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHK--VNHDNDD 207
            W+A   + EH+  SWM+MPV N + AA    ++  Y +     +    L+W+AL+ ITL+K  V  D DD
Sbjct:  491 WIALKKELEHVNASWMMMPVGNFVAAAVGPMLDSAYRDAMQLWFAFAFLMWVALFAITLYKAFVMPDYDD 560          
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Match: I8T1W8_9GAMM (Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I8T1W8_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 6.090e-5
Identity = 21/62 (33.87%), Postives = 32/62 (51.61%), Query Frame = 1
Query:    4 WVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVLLWLALWPITLHKV 189
            W+  P D   + P+W I  V N+        V   + E  WF +  G++LW+A +PI LH+V
Sbjct:  129 WIMKPQDESILTPAWFIPVVGNIFVPLGG--VPLGHVEISWFFFSVGLVLWVAFFPIVLHRV 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75256.15508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G375_ECTSI2.700e-1955.71Glutaredoxin glutaredoxin/malate transporter fusio... [more]
A0A6H5K278_9PHAE3.530e-1955.71Hemerythrin domain-containing protein n=1 Tax=Ecto... [more]
A0A0L0FQJ1_9EUKA1.540e-940.98Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A8HU96_CHLRE6.550e-840.32Glutaredoxin/malate transporter fusion protein n=3... [more]
A0A2J8AAD0_9CHLO5.850e-738.57Glutaredoxin-C6 n=1 Tax=Tetrabaena socialis TaxID=... [more]
UPI001E29843E4.860e-640.63SLAC1 anion channel family protein n=1 Tax=Ornithi... [more]
A0A150GBZ6_GONPE7.160e-637.14Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
I8T1W8_9GAMM6.090e-533.87Uncharacterized protein n=1 Tax=Hydrocarboniphaga ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75256contigH-paniculata_contig75256:197..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7G375
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.9297695-CDS-H-paniculata_contig75256:196..4091622930923.9297695-CDS-H-paniculata_contig75256:196..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75256 197..409 -
1691481512.473094-CDS-H-paniculata_contig75256:196..4091691481512.473094-CDS-H-paniculata_contig75256:196..409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75256 197..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75256.15508.1prot_H-paniculata_contig75256.15508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75256 197..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75256.15508.1

>prot_H-paniculata_contig75256.15508.1 ID=prot_H-paniculata_contig75256.15508.1|Name=mRNA_H-paniculata_contig75256.15508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
SWVASPVDTEHIQPSWMIMPVSNLMGAAAAWSVNPDYYEWGWFLYGTGVL
LWLALWPITLHKVNHDNDDDD
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mRNA from alignment at H-paniculata_contig75256:197..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75256.15508.1 ID=mRNA_H-paniculata_contig75256.15508.1|Name=mRNA_H-paniculata_contig75256.15508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig75256:197..409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGGGTGGCCTCCCCCGTGGATACGGAGCACATTCAGCCCAGCTGGAT GATCATGCCCGTCTCGAACTTGATGGGGGCCGCCGCCGCCTGGTCGGTCA ACCCGGATTATTATGAGTGGGGTTGGTTCCTGTACGGCACCGGCGTCCTG CTCTGGCTGGCCCTCTGGCCAATTACCCTTCACAAGGTAAATCATGATAA TGATGACGATGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig75256:197..409-

>mRNA_H-paniculata_contig75256.15508.1 ID=mRNA_H-paniculata_contig75256.15508.1|Name=mRNA_H-paniculata_contig75256.15508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig75256:197..409- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGGGTGGCCTCCCCCGTGGATACGGAGCACATTCAGCCCAGCTGGAT
GATCATGCCCGTCTCGAACTTGATGGGGGCCGCCGCCGCCTGGTCGGTCA
ACCCGGATTATTATGAGTGGGGTTGGTTCCTGTACGGCACCGGCGTCCTG
CTCTGGCTGGCCCTCTGGCCAATTACCCTTCACAAGGTAAATCATGATAA
TGATGACGATGATAGCTGGGTGGCCTCCCCCGTGGATACGGAGCACATTC
AGCCCAGCTGGATGATCATGCCCGTCTCGAACTTGATGGGGGCCGCCGCC
GCCTGGTCGGTCAACCCGGATTATTATGAGTGGGGTTGGTTCCTGTACGG
CACCGGCGTCCTGCTCTGGCTGGCCCTCTGGCCAATTACCCTTCACAAGG
TAAATCATGATAATGATGACGATGAT
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