mRNA_H-paniculata_contig74310.15415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig74310.15415.1
Unique NamemRNA_H-paniculata_contig74310.15415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74310.15415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig74310contigH-paniculata_contig74310:113..561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size293
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig74310.15415.1prot_H-paniculata_contig74310.15415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig74310 148..561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.2573814-UTR-H-paniculata_contig74310:112..1471622930911.2573814-UTR-H-paniculata_contig74310:112..147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74310 113..147 -
1691481507.2035866-UTR-H-paniculata_contig74310:112..1471691481507.2035866-UTR-H-paniculata_contig74310:112..147Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig74310 113..147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930911.290021-CDS-H-paniculata_contig74310:147..2651622930911.290021-CDS-H-paniculata_contig74310:147..265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74310 148..265 -
1691481507.2165408-CDS-H-paniculata_contig74310:147..2651691481507.2165408-CDS-H-paniculata_contig74310:147..265Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74310 148..265 -
1622930911.3122535-CDS-H-paniculata_contig74310:421..5611622930911.3122535-CDS-H-paniculata_contig74310:421..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74310 422..561 -
1691481507.227634-CDS-H-paniculata_contig74310:421..5611691481507.227634-CDS-H-paniculata_contig74310:421..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig74310 422..561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig74310.15415.1

>prot_H-paniculata_contig74310.15415.1 ID=prot_H-paniculata_contig74310.15415.1|Name=mRNA_H-paniculata_contig74310.15415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MLVVRASTTRRKRYSAEPLLSKRRSWARSVEIWPYCSVTWVAWCRVRWAA
LLVSTGKSRGSGRITPTVCCTSVYDTPGGLFLSLS*
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mRNA from alignment at H-paniculata_contig74310:113..561-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig74310.15415.1 ID=mRNA_H-paniculata_contig74310.15415.1|Name=mRNA_H-paniculata_contig74310.15415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=449bp|location=Sequence derived from alignment at H-paniculata_contig74310:113..561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTTGTCAGGGCAAGTACGACGAGGCGAAAGCGTTATTCGGCAGA
GCCATTGCTATCGAAGAGAAGGTCGTGGGCCCGGAGCGTCGAGATCTGGC
CGTATTGCTCAGTAACCTGGGTGGCGTGGTGCAGAGTCAGGTGAGCCATG
TTACGGCGTGTATGTTGATTGGACGGGCACGTTAGGACTTGGGGAATATG
TGAATGTCGCTTCGGTGGACGGCGGGAGTAAGCAGTTGTCGAGATACCCT
GGTGCATAGAAGAGGGTGTCGGTGTGTGTATCGCGTCGCTAAGCAGGTGG
GCGGCGTTGTTGGTCAGCACCGGTAAGAGTCGTGGAAGTGGTCGGATAAC
TCCGACGGTCTGCTGTACGAGTGTCTACGACACACCGGGTGGTCTATTTC
TCAGCCTGAGCTAACACGTGGGGCGGAAATGTTGGTTGTCAGGGCAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig74310:113..561-

>mRNA_H-paniculata_contig74310.15415.1 ID=mRNA_H-paniculata_contig74310.15415.1|Name=mRNA_H-paniculata_contig74310.15415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig74310:113..561- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTTGTCAGGGCAAGTACGACGAGGCGAAAGCGTTATTCGGCAGA
GCCATTGCTATCGAAGAGAAGGTCGTGGGCCCGGAGCGTCGAGATCTGGC
CGTATTGCTCAGTAACCTGGGTGGCGTGGTGCAGAGTCAGATGTTGGTTG
TCAGGGCAAGTACGACGAGGCGAAAGCGTTATTCGGCAGAGCCATTGCTA
TCGAAGAGAAGGTCGTGGGCCCGGAGCGTCGAGATCTGGCCGTATTGCTC
AGTAACCTGGGTGGCGTGGTGCAGAGTCAGGTGGGCGGCGTTGTTGGTCA
GCACCGGTAAGAGTCGTGGAAGTGGTCGGATAACTCCGACGGTCTGCTGT
ACGAGTGTCTACGACACACCGGGTGGTCTATTTCTCAGCCTGAGCTAAGT
GGGCGGCGTTGTTGGTCAGCACCGGTAAGAGTCGTGGAAGTGGTCGGATA
ACTCCGACGGTCTGCTGTACGAGTGTCTACGACACACCGGGTGGTCTATT
TCTCAGCCTGAGCTAA
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