mRNA_H-paniculata_contig7387.15358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7387.15358.1
Unique NamemRNA_H-paniculata_contig7387.15358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7387.15358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7387contigH-paniculata_contig7387:2997..4627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size535
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7387.15358.1prot_H-paniculata_contig7387.15358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7387 3008..4627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.2213814-UTR-H-paniculata_contig7387:2996..30071622930903.2213814-UTR-H-paniculata_contig7387:2996..3007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7387 2997..3007 +
1691481503.5942175-UTR-H-paniculata_contig7387:2996..30071691481503.5942175-UTR-H-paniculata_contig7387:2996..3007Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7387 2997..3007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930903.241747-CDS-H-paniculata_contig7387:3007..32141622930903.241747-CDS-H-paniculata_contig7387:3007..3214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7387 3008..3214 +
1691481503.604532-CDS-H-paniculata_contig7387:3007..32141691481503.604532-CDS-H-paniculata_contig7387:3007..3214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7387 3008..3214 +
1622930903.2629993-CDS-H-paniculata_contig7387:4312..46271622930903.2629993-CDS-H-paniculata_contig7387:4312..4627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7387 4313..4627 +
1691481503.6133707-CDS-H-paniculata_contig7387:4312..46271691481503.6133707-CDS-H-paniculata_contig7387:4312..4627Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7387 4313..4627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7387.15358.1

>prot_H-paniculata_contig7387.15358.1 ID=prot_H-paniculata_contig7387.15358.1|Name=mRNA_H-paniculata_contig7387.15358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MAVLNEGVEEGRDEGRRGERAGDGGGSCASPSTGVAKDWAMATQRSRAAS
RVAREMEEGTGDGSVSEYPMQRAPIEPMLDKGEHGNQDCLHIMQQQQQQQ
QQQLSHTKRSSSGRGGGGGGGGGDARKSINSSSTSSTRTSGAGFEARPEI
SPSQPSGGRVSPSVTSCQKKQGQT
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mRNA from alignment at H-paniculata_contig7387:2997..4627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7387.15358.1 ID=mRNA_H-paniculata_contig7387.15358.1|Name=mRNA_H-paniculata_contig7387.15358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1631bp|location=Sequence derived from alignment at H-paniculata_contig7387:2997..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACGCCCATGGCTGTCCTTAACGAGGGAGTAGAAGAGGGAAGGGAC
GAGGGGAGGCGGGGAGAACGCGCTGGCGATGGCGGCGGGTCTTGCGCATC
ACCGTCGACGGGTGTGGCGAAAGATTGGGCAATGGCAACACAGCGGAGCA
GGGCGGCGTCGAGGGTTGCACGGGAAATGGAGGAGGGGACGGGGGACGGA
AGTGTTTCTGAATACCCGGTGAGAAAACGGTGGTGTGAACTGGTTTCATG
ATGAGCGCTTTGACGGTTCTGTTAATGGTGACTGCACTTTCGTTGAATCT
TGAATGTCATATCGTGTGGTGTCGGACTTTGGGGGGTGGGGAGGGAGCAA
TCTATGTGTGCATGTTGAGTTTATGCAAATCACGATCAATTTGAAGTAGA
CATCCCCATCAGTAAAATTACGTAAAGTGGGGGCGGGGGGGGGGGGGGCG
GCAATAAGAAAACGAGGGGTTTCTATAAAAAGTCATGGACCAAACGCCAC
CCCATTTGGGCCCAAAATTGAGCTTTTTTTGTTTGTGCCAAAGTAGCCTA
TTTAGCGACATAGAGCAGCTCCTAACTATGTCCCATAGTAGTAACTGTCT
CGAGAACGGAGACATTACGCAGCCGAAAGAACCCGTCAATGGATGGATCT
CCGCAAGATCCTTCCAACGGCACACCATTTATTGTCAGTAGCGACTTGGT
TCTCGAGATTATCGCGTTTATTACTATCGTATCTGTTTGGAATAGGTGCG
AAAACACGAGGACTTGCCCACGTGAATCAGGGCAAGATGGGTGTCATGTG
GCGGGTGTCCTGTCGAACTACCGAGCGTCATTGTATGCAAACATTCAAGT
GTATTCGAAAGTCGGTTCACCTCGCGCGCGTGCTTGGTTACTGTGGATAG
ATACGCTGTAGGAGTGGCGATAAGGGACTAAACACTTGGTTTATGTCCAG
CTCTCTCAGCATAGTATATTCCAATGATTGTACAACGAAATGAGGTAGGC
CCTAGGCTATTTGCGTCCATGGGCCTGTACAATGAACACTCAGTTATGCT
CTATTTGTTGTCCTATGTGTCATGCTCCCATGGTTTGATGGTTGTCTTGC
AAAGTCAAGTGTTTTTGGTTATTCCTGTTCATGAGAAATATACATCAAGA
GCGACACGAGTGAGTAAATAGTCTGCATGAAAATAAGACAAGCACTTGGG
GCGTTGATATGCCACCCCCACGTTATATACGGGCATTGATTTATGGCGGC
CACCCCCCCCCCTCCCATATCTCTCTCTCTCTCCCTTTCTCTTTCGCTCT
GTCTTGCGCTTCTCAGATGCAACGGGCCCCAATCGAGCCGATGCTCGATA
AAGGCGAGCATGGGAATCAAGATTGTCTTCACATTATGCAGCAGCAGCAG
CAACAACAACAACAACAACTGTCACATACCAAGCGATCATCGTCGGGCAG
AGGCGGTGGCGGTGGCGGCGGTGGCGGCGACGCGAGGAAGTCTATTAACA
GCAGTAGCACTAGCAGTACCCGCACTTCAGGAGCAGGGTTCGAAGCACGA
CCTGAAATTTCGCCATCCCAACCGAGCGGAGGACGGGTGTCGCCGTCGGT
GACATCATGTCAGAAGAAGCAGGGGCAGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig7387:2997..4627+

>mRNA_H-paniculata_contig7387.15358.1 ID=mRNA_H-paniculata_contig7387.15358.1|Name=mRNA_H-paniculata_contig7387.15358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig7387:2997..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTCCTTAACGAGGGAGTAGAAGAGGGAAGGGACGAGGGGAGGCG
GGGAGAACGCGCTGGCGATGGCGGCGGGTCTTGCGCATCACCGTCGACGG
GTGTGGCGAAAGATTGGGCAATGGCAACACAGCGGAGCAGGGCGGCGTCG
AGGGTTGCACGGGAAATGGAGGAGGGGACGGGGGACGGAAGTGTTTCTGA
ATACCCGATGGCTGTCCTTAACGAGGGAGTAGAAGAGGGAAGGGACGAGG
GGAGGCGGGGAGAACGCGCTGGCGATGGCGGCGGGTCTTGCGCATCACCG
TCGACGGGTGTGGCGAAAGATTGGGCAATGGCAACACAGCGGAGCAGGGC
GGCGTCGAGGGTTGCACGGGAAATGGAGGAGGGGACGGGGGACGGAAGTG
TTTCTGAATACCCGATGCAACGGGCCCCAATCGAGCCGATGCTCGATAAA
GGCGAGCATGGGAATCAAGATTGTCTTCACATTATGCAGCAGCAGCAGCA
ACAACAACAACAACAACTGTCACATACCAAGCGATCATCGTCGGGCAGAG
GCGGTGGCGGTGGCGGCGGTGGCGGCGACGCGAGGAAGTCTATTAACAGC
AGTAGCACTAGCAGTACCCGCACTTCAGGAGCAGGGTTCGAAGCACGACC
TGAAATTTCGCCATCCCAACCGAGCGGAGGACGGGTGTCGCCGTCGGTGA
CATCATGTCAGAAGAAGCAGGGGCAGACCATGCAACGGGCCCCAATCGAG
CCGATGCTCGATAAAGGCGAGCATGGGAATCAAGATTGTCTTCACATTAT
GCAGCAGCAGCAGCAACAACAACAACAACAACTGTCACATACCAAGCGAT
CATCGTCGGGCAGAGGCGGTGGCGGTGGCGGCGGTGGCGGCGACGCGAGG
AAGTCTATTAACAGCAGTAGCACTAGCAGTACCCGCACTTCAGGAGCAGG
GTTCGAAGCACGACCTGAAATTTCGCCATCCCAACCGAGCGGAGGACGGG
TGTCGCCGTCGGTGACATCATGTCAGAAGAAGCAGGGGCAGACC
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