mRNA_H-paniculata_contig12438.1529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12438.1529.1
Unique NamemRNA_H-paniculata_contig12438.1529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12438.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12438contigH-paniculata_contig12438:4141..4956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size816
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5588315-CDS-H-paniculata_contig12438:4140..45481622928963.5588315-CDS-H-paniculata_contig12438:4140..4548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12438 4141..4548 +
1691480683.9618402-CDS-H-paniculata_contig12438:4140..45481691480683.9618402-CDS-H-paniculata_contig12438:4140..4548Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12438 4141..4548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.5762284-UTR-H-paniculata_contig12438:4548..49561622928963.5762284-UTR-H-paniculata_contig12438:4548..4956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12438 4549..4956 +
1691480683.9752855-UTR-H-paniculata_contig12438:4548..49561691480683.9752855-UTR-H-paniculata_contig12438:4548..4956Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12438 4549..4956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12438.1529.1prot_H-paniculata_contig12438.1529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12438 4141..4548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12438.1529.1

>prot_H-paniculata_contig12438.1529.1 ID=prot_H-paniculata_contig12438.1529.1|Name=mRNA_H-paniculata_contig12438.1529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MPTSASTSTSTITITITIIAILIFTNTLLNILHFLIHILLVIIHNILHRR
CRHHRFLFLFLFILPIIYIHPIRRRRLALRRRLDLSHSILRYPSLVIIQL
VPRRRRHGSSHISERSSRSGTVTTRGDSGAVVCMR*
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mRNA from alignment at H-paniculata_contig12438:4141..4956+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12438.1529.1 ID=mRNA_H-paniculata_contig12438.1529.1|Name=mRNA_H-paniculata_contig12438.1529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=816bp|location=Sequence derived from alignment at H-paniculata_contig12438:4141..4956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTACCTCGGCCAGCACCAGCACCAGCACCATCACCATCACCATCAC
CATCATCGCCATCCTCATCTTCACCAACACCCTCCTGAACATCCTCCATT
TCCTCATCCATATCCTCCTGGTCATCATCCACAATATCCTCCACCGCCGC
TGCCGCCATCATCGCTTCCTTTTCCTCTTCCTGTTCATCCTCCCGATCAT
CTATATCCATCCCATCCGCCGACGAAGACTTGCCCTCAGGAGAAGACTCG
ACCTCTCTCACAGTATTCTTCGATATCCCTCCCTGGTCATCATCCAGCTC
GTCCCCCGACGTCGTCGCCACGGCTCTTCCCACATCAGTGAACGAAGTAG
CAGAAGCGGCACCGTCACCACCCGCGGCGACAGCGGGGCTGTGGTGTGCA
TGCGATGATGAAAAGGATGACCTAATATTTGGGGTAGCAGTCCCCGCGCC
CCCTCTGGATTCGTCCCGGCGGCCGCGGCTGCCGTGCCTTTTTGTACTGG
CAGTCTTGGCGCCGGTGGATGTATCGTCATCATCCATCATCTCATCATCG
TCATCATCATCATCGTTGCCGTCATCGCTATCGTCGTCCTTGTCTTGTTG
CGATGGTTGATTTCGGTCAAGGAGGGGGGTGGTATCTGTCCTTGCGCTCT
GTTTCCCTGGGATTTCGGCGGTTTGGTCATCATCTTCTTGAGACTGGTCG
GTGGCTTCGTTGTCATCGTCGTCGAACGACAAATCCGAATCTGATTCTCG
TTCTCGTTCTAGCTCGCCTTCTTGTAGGTAGTTATCTGAGTCCTCTGATA
AGCCTCTGTTTAACCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12438:4141..4956+

>mRNA_H-paniculata_contig12438.1529.1 ID=mRNA_H-paniculata_contig12438.1529.1|Name=mRNA_H-paniculata_contig12438.1529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig12438:4141..4956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTACCTCGGCCAGCACCAGCACCAGCACCATCACCATCACCATCAC
CATCATCGCCATCCTCATCTTCACCAACACCCTCCTGAACATCCTCCATT
TCCTCATCCATATCCTCCTGGTCATCATCCACAATATCCTCCACCGCCGC
TGCCGCCATCATCGCTTCCTTTTCCTCTTCCTGTTCATCCTCCCGATCAT
CTATATCCATCCCATCCGCCGACGAAGACTTGCCCTCAGGAGAAGACTCG
ACCTCTCTCACAGTATTCTTCGATATCCCTCCCTGGTCATCATCCAGCTC
GTCCCCCGACGTCGTCGCCACGGCTCTTCCCACATCAGTGAACGAAGTAG
CAGAAGCGGCACCGTCACCACCCGCGGCGACAGCGGGGCTGTGGTGTGCA
TGCGATGAATGCCTACCTCGGCCAGCACCAGCACCAGCACCATCACCATC
ACCATCACCATCATCGCCATCCTCATCTTCACCAACACCCTCCTGAACAT
CCTCCATTTCCTCATCCATATCCTCCTGGTCATCATCCACAATATCCTCC
ACCGCCGCTGCCGCCATCATCGCTTCCTTTTCCTCTTCCTGTTCATCCTC
CCGATCATCTATATCCATCCCATCCGCCGACGAAGACTTGCCCTCAGGAG
AAGACTCGACCTCTCTCACAGTATTCTTCGATATCCCTCCCTGGTCATCA
TCCAGCTCGTCCCCCGACGTCGTCGCCACGGCTCTTCCCACATCAGTGAA
CGAAGTAGCAGAAGCGGCACCGTCACCACCCGCGGCGACAGCGGGGCTGT
GGTGTGCATGCGATGA
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