mRNA_H-paniculata_contig73030.15275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig73030.15275.1
Unique NamemRNA_H-paniculata_contig73030.15275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A1I9LVJ3_9PHAE (50S ribosomal protein L21, chloroplastic n=10 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 4.820e-42
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEPKKFIEFNRL+LKIGSTILIRRILFAKNKT THIGQPYL+NILVKGKISKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRILFAKNKTTTHIGQPYLKNILVKGKISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A0R6M4T4_UNDPI (50S ribosomal protein L21, chloroplastic n=25 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4T4_UNDPI)

HSP 1 Score: 124 bits (311), Expect = 1.740e-35
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEPKKFIEFNRL+LKIGSTILIRR+LF K K  T IGQPYL N++VKG +SKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTILIRRVLFVKQKKNTLIGQPYLNNVVVKGVVSKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A8F0F7S8_9PHAE (Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7S8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.000e-34
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEPKKFIEFN L++KIGSTILIRR+LF KN+T T IGQPYL +++VKG ISKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNXLIIKIGSTILIRRVLFFKNETNTFIGQPYLNDVVVKGIISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A2R4QQ35_9PHAE (50S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ35_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.350e-34
Identity = 57/71 (80.28%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEPKKFIEFNRL LK+GSTI+I+R+LF K K  T IGQPYL+NIL+ G ISKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLPLKVGSTIIIKRVLFVKKKADTFIGQPYLKNILLTGIISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A8F0JZ48_9PHAE (Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZ48_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.360e-33
Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEPKKFIEFNRL+LKIGST+LIRR+LF K +  T IG+PYL+ I++KG ISKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPKKFIEFNRLILKIGSTVLIRRVLFVKKEANTLIGRPYLEGIVLKGIISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A1L2F1Q6_9PHAE (Ribosomal protein L21 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1Q6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.450e-32
Identity = 57/71 (80.28%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYAIIEASGRQFWVEP KFIE NRL L+IGS ILI+RILF K KT T IGQPYL NI++KG ISKHFLGP
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSIILIKRILFVKKKTNTFIGQPYLTNIILKGIISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A141BSP2_9PHAE (50S ribosomal protein L21, chloroplastic n=14 Tax=Sargassum TaxID=3015 RepID=A0A141BSP2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.920e-32
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLG 210
            MEYAIIEASGRQFWVEP KFIE NRL L+IGSTILI+RILF K KT T IGQPYL NI++KG ISKHFLG
Sbjct:    1 MEYAIIEASGRQFWVEPNKFIELNRLPLRIGSTILIKRILFVKKKTNTFIGQPYLTNIVLKGIISKHFLG 70          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A8F0JYD6_9PHAE (Ribosomal protein L21 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYD6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.570e-31
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            MEYA+IEASGRQFWVEPKKFIEFNRL++ IGST++++RILF     A +IGQPYL N L+KG ISKHFLGP
Sbjct:    1 MEYAVIEASGRQFWVEPKKFIEFNRLLINIGSTLIMQRILFMNKTGAINIGQPYLPNTLIKGIISKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A8E5XRL0_9PHAE (50S ribosomal protein L21, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRL0_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 3.790e-28
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLGP 213
            M+YAIIEASGRQFWVEP+KF+E NRL + IG+ ILI+R+LFAK    T IGQPY+ +I +KG +SKHFLGP
Sbjct:    1 MKYAIIEASGRQFWVEPEKFVELNRLPVNIGTKILIKRVLFAKTGEKTRIGQPYINHIEIKGVVSKHFLGP 71          
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Match: A0A8E5BG87_9PHAE (Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BG87_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.640e-25
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHIGQPYLQNILVKGKISKHFLG 210
            M+YAI+EASGRQFWVEP KF E NRL  K+GST++ +R+LF   K    IGQPYL N +VKG I+KHFLG
Sbjct:    1 MKYAILEASGRQFWVEPTKFFELNRLSRKVGSTLIFKRVLFLNKKGVCLIGQPYLMNQVVKGIITKHFLG 70          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig73030.15275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1I9LVJ3_9PHAE4.820e-4295.7750S ribosomal protein L21, chloroplastic n=10 Tax=... [more]
A0A0R6M4T4_UNDPI1.740e-3583.1050S ribosomal protein L21, chloroplastic n=25 Tax=... [more]
A0A8F0F7S8_9PHAE1.000e-3481.69Ribosomal protein L21 n=2 Tax=Laminariales TaxID=2... [more]
A0A2R4QQ35_9PHAE6.350e-3480.2850S ribosomal protein L21 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0JZ48_9PHAE2.360e-3378.87Ribosomal protein L21 n=1 Tax=Chorda asiatica TaxI... [more]
A0A1L2F1Q6_9PHAE1.450e-3280.28Ribosomal protein L21 n=1 Tax=Coccophora langsdorf... [more]
A0A141BSP2_9PHAE2.920e-3281.4350S ribosomal protein L21, chloroplastic n=14 Tax=... [more]
A0A8F0JYD6_9PHAE4.570e-3173.24Ribosomal protein L21 n=1 Tax=Protohalopteris sp. ... [more]
A0A8E5XRL0_9PHAE3.790e-2867.6150S ribosomal protein L21, chloroplastic n=1 Tax=I... [more]
A0A8E5BG87_9PHAE5.640e-2564.29Ribosomal protein L21 n=1 Tax=Phaeophyceae sp. Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig73030contigH-paniculata_contig73030:433..645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog2880.D1J6Z3
Preferred namerpl21
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S7IP@2759,COG0261@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930891.585737-CDS-H-paniculata_contig73030:432..6451622930891.585737-CDS-H-paniculata_contig73030:432..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73030 433..645 +
1691481498.830806-CDS-H-paniculata_contig73030:432..6451691481498.830806-CDS-H-paniculata_contig73030:432..645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig73030 433..645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig73030.15275.1prot_H-paniculata_contig73030.15275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig73030 433..645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig73030.15275.1

>prot_H-paniculata_contig73030.15275.1 ID=prot_H-paniculata_contig73030.15275.1|Name=mRNA_H-paniculata_contig73030.15275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MEYAIIEASGRQFWVEPKKFIEFNRLMLKIGSTILIRRILFAKNKTATHI
GQPYLQNILVKGKISKHFLGP
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mRNA from alignment at H-paniculata_contig73030:433..645+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig73030.15275.1 ID=mRNA_H-paniculata_contig73030.15275.1|Name=mRNA_H-paniculata_contig73030.15275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig73030:433..645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATATGCGATTATAGAGGCCAGTGGAAGACAATTTTGGGTGGAACC CAAAAAATTTATCGAGTTTAATAGGTTGATGCTTAAAATTGGTAGTACAA TCTTAATCCGACGAATTTTATTCGCTAAAAATAAAACTGCAACCCATATC GGTCAGCCTTATTTACAAAATATTTTAGTGAAAGGCAAAATAAGTAAACA TTTTTTAGGGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig73030:433..645+

>mRNA_H-paniculata_contig73030.15275.1 ID=mRNA_H-paniculata_contig73030.15275.1|Name=mRNA_H-paniculata_contig73030.15275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig73030:433..645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAATATGCGATTATAGAGGCCAGTGGAAGACAATTTTGGGTGGAACC
CAAAAAATTTATCGAGTTTAATAGGTTGATGCTTAAAATTGGTAGTACAA
TCTTAATCCGACGAATTTTATTCGCTAAAAATAAAACTGCAACCCATATC
GGTCAGCCTTATTTACAAAATATTTTAGTGAAAGGCAAAATAAGTAAACA
TTTTTTAGGGCCAATGGAATATGCGATTATAGAGGCCAGTGGAAGACAAT
TTTGGGTGGAACCCAAAAAATTTATCGAGTTTAATAGGTTGATGCTTAAA
ATTGGTAGTACAATCTTAATCCGACGAATTTTATTCGCTAAAAATAAAAC
TGCAACCCATATCGGTCAGCCTTATTTACAAAATATTTTAGTGAAAGGCA
AAATAAGTAAACATTTTTTAGGGCCA
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