mRNA_H-paniculata_contig727.15241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI) HSP 1 Score: 602 bits (1551), Expect = 1.100e-190 Identity = 440/1072 (41.04%), Postives = 562/1072 (52.43%), Query Frame = 1
Query: 466 VSMSAVLDIAAKIFGSNSGGSXXXXSXSDTGGRASWVSGASSGSGV-------SGLATFTVDVHTDGSTKLGIGVKELGGGAVVVQDLHRAIGAAPGPAERAGVTLGDVILGINYVPLDRGLVHTAALLAEAISRAGFVKLQISRHVKADSRRRQGIPGRDCPVVTDLMWRTAQLSRAGILTSSERHTIAGFILQLMAWDEGTSAPPPPSPMISPLNFSIMRTSDDRFPRRGXXXXXXXXXXXXXXXXXXXXXXXXXKPAAMTMARWVASAQLDSLVLRVKGLREAVYVRCLHAKSTFEPSKASSVWGTTATTTSISASPDAAPFPSPPR--RATVRYILRVEDIATGREWLVDPRYSDFSEVHEELLAIWPPIGDLPFPAKRPVSGLLLGV--AGVGGAVVEERMVGLEAFLHGALTLLGIYTSVDSRCVSGLRIIQDFLGVPTDLLEAETSLPPTLCDQKRAELLLYKLLNQVDSPAARIKHKLMRDFHP--TLAPDVESLMNGTASRLSHLQGYLLKQHREQLSAYLEPSETNSSTETNNAATHKAVRRQVELSLYLPLRRYLWSDLSSRLREPSRNLQRAVKALRLSPPSVFGVDCPRVLSAVEWGPAKKAMSQATRLVLPTDQIEGLSRAAGHIAALHAALQQSMXXXXXXXXSDATAATGTQRAAVYGKQGDGHFLGMSDGADWRAL----DGSNDSSTISNSNNQPIVAASTVRYREQITAIQGDDPSTSGVADRVSRGGRGCECGDPIICTPLTNGCDRNSYANGRMVHNDGVADTLVVLGEVVGGGDVGDSDDGIGRGGASFGQGAAEHSQACAPELSPEPCSPDTAAGKRAADFPHPHTGNLEEGVLERSPLVSRQKNAADFHPCLLSKEDKEDPSSGGPRPTPNGIGQGGDGCDREGEDTSPPPVPTYASTIIDSMGFDHPTAAVLSAGDLPKGAMRDSNDRLGDSVIGENRGGVAQGQRQGRGFGRGGQGLSETK--------SLAAMGADDFLPLFAFTLVHSAPEDLLVLQTLLTHLMDAQCSLAEEGYLVATLEAAVSFISQVYKSSCCTDGGQDSS 3606
VSM+ +LDIA +FGS G S G G+S SGV L TFTVDVHT GS LG+ VKELGGGAV V+D+ + G + GPAE AG+ +GDVILGINY PL++GLVHT+ LAEAI+ AGFVKLQISR V++ S R Q +P +DC +V++LMWRTAQL +AG S+ERH+IAG +LQ MAW+EGTS ++PL + P + ASA LDSLVL KGLR+A+ VRCLH ++ E + SVWG T++ + S + A P + P RATVR+++RVED+ TGR+WLV P Y D S + +ELLA+WPPI DLPFPAKR A VVEER+V LEAFL GAL+LLG+Y S+D RC L I+QDFLG P DL A+ +L P L DQKRAELLLY+LLNQ DSPAAR+KH LMRDF +LAPDV+SLM +SRL LQ ++L H EQLS+ +++ET A KAVRRQVELSLYLPLRR LW +L+ R+R+P+R L+RA++ALR SPP+VFG++ VL++ EWGP K+ M QATR VLPTDQI+GL RAA H+ ALHA+LQ + +DAT ++ G+ G L + L DG ++ +T + +G+ G+ +R S G R L DR + A DG T DV DG P +A AD N+ + ++E Q C+ ++ + DRE + + +A+ ++ D+ A + S DS+ G N G A G S AMGADDFLPLFA LVHSAP DLL+ QT+LTHLMD SL+E GYLVATLEAAVSFI+QV+ SS DG QDSS
Sbjct: 195 VSMANLLDIAVSLFGSGDGAGGRGGRHSIDG------DGSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWR-QSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGTSR------ALAPLLATT--------------------------------------PPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWGPTSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAAAAETAETEETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSC-----AYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSS------CNGRSGSSGALSVDSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGE----FGIRERDSNGLR------------LGGRPDRQTRAVSDSFTGDGGRATN----------DVASDSDG-----------------------------PSSAPALSLAD--EEQRLNVVQELVEDDLCWQAQ--------CVQDEDIATEE------------------VDRE--------------ALRPNFNSSRSWSALSTSHDISPTAAKSSTSSW-DSIGGLNEG-AAPGXXXXXXXXXXXXXXXXXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLSADGNQDSS 1102
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Match: A0A7S3H9E4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E4_9STRA) HSP 1 Score: 165 bits (418), Expect = 6.760e-38 Identity = 157/588 (26.70%), Postives = 252/588 (42.86%), Query Frame = 1
Query: 610 LATFTVDVHTDGSTKLGIGVKELGGGAVVVQDLHRAIGAAPGPAERAGVTLGDVILGINYVPLDRGLVHTAALLAEAISRAGFVKLQISRHVKADSRRRQGIPGRDCPVVTDLMWRTAQLSRAGILTSSERHTIAGFILQLMAWDEGTSAPPPPSPMISPLNFSIMRTSDDRFPRRGXXXXXXXXXXXXXXXXXXXXXXXXXKPAAMTMARWVASAQLDSLVLRVKGLREAVYVRCLHAKSTFEPSKASSVWGTTATTTSISASPDAAPFPSPPRRATVRYILRVEDIATGREWLVDPRYSDFSEVHEELLAIWPPIGDLPFPAKRPVSGLLLGVAGVGGAVVEERMVGLEAFLHGALTLLGIYTSVDSRCVSGLRIIQDFLGVPTDLLEAETSLPPTLCDQKRAELLLYKLLNQVDSPAAR--IKHKLMRDFHPTL----APDVESLMNGTASRLSHLQGYLLKQHREQLSAYLEPSETNSSTETNNAATHKAVRRQVELSLYLPLRRYLWSDLSSRLREPSRNLQRAVKALRLSPPSVFGVDCPRVLSAVEWGPAKKAMSQATRLVLPTDQIEGLSRAAGHIAALH 2355
+ + VD+ G+ LGIGVK+L + V L R PG E AG+ LGDVI G+N++P G +++ + R G + I + IPG P +++ + L ++ + + ER +L M L+ +R S D G A+ + L+ +++ KGLR A+ VR +H KS + TV Y+LRVED+ +G +W+V RYSDF ++EELL + ++ FP KR L + +VE R+V LE ++ L +L +Y ++DS LR +Q FLGV L + PP L DQ+ EL+ Y+ LN S A + ++ D + A ++N L+ ++ ++ + H Q+ L+ + + + + K +RRQVE +LYLPLRR ++ + + L E S+ LQRA+ L+ +PP F ++ P V A KA + + LP DQ + L +AA + LH
Sbjct: 127 IYSVVVDLGKTGT--LGIGVKDLADNVLAVSMLKRE-NCCPGAGEDAGIRLGDVIYGVNFIPTREGSKTLISIIKKETGR-GKTHIHIQGW-RCHQLCSDAIPGYHFPRADEILVQAYSLVQSKVFSDWERWNFIEILLGHM------------------LDDLKLRASGDDGDTSGLLEPSQ----------------------GAARAKQMQVLDLERNIMQAKGLRTALCVRIVHTKSHGD---------------------------------TVVYVLRVEDVQSGLQWVVQRRYSDFFALNEELLDMTHFTKEVEFPRKR------LSIRNTA-KLVENRIVALEQYMRRMLHILTLYATMDSSASRALRHLQTFLGVDNYL---DCVHPPALDDQRFIELMAYQFLNDFGSEACQQCVRFITSVDLDGMVEIGTADGYVPVLNHARDALAEVEQFVQQLHMAQMIQTLQTRREDLNEDQLRSFVRKCIRRQVEAALYLPLRRTVFRIVFTFLAEKSKLLQRAITMLQGAPPKFFMLE-PFVTRATSLPRTVKAFRRVIQAYLPADQGQLLIQAATAVMELH 625
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Match: A0A8K1CTD0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTD0_PYTOL) HSP 1 Score: 72.0 bits (175), Expect = 7.430e-9 Identity = 83/407 (20.39%), Postives = 160/407 (39.31%), Query Frame = 1
Query: 1228 MTMARWVASAQLDSLVLRVKGLREAVYVRCLHAKSTFEPSKASSVWGTTATTTSISASPDAAPFPSPPRRATVRYILRVEDIATGREWLVDPRYSDFSEVHEELLAIWPPIGDLPFPAKRPVSGLLLGVAGVGGAVVEERMVGLEAFLHGALTLLGIYTSVDSRCVSG--LRIIQDFLGVPTDLLEAETSLPPTLCDQKRAELLLYKLLNQVDSPAARIKHKLMRDFHPTLAPDVESLMNGTASRLSHLQGYLL-------KQHREQLSAY--------------------LEPSETNSSTETNNAATHKAVRRQVELSLYLPLRRYLWSDLSSRLREPSRNLQRAVKALRLSPPSVFGVDCPRVLSAVEWGPAKKAMSQATRLVLPTDQIEGLSRAAGHIAALHAA 2361
M M + ++ + SL+L+ KG+R+A+ VR ++ K+S R + Y++RV D+ +G W R+ + ++H +L + + D FP +R + +R LEAFL TL+ T ++G L+ +Q FL +P + + P + + +Y +N SP + +K + + +L+ + L +Q Y+L K H +++ Y L + SS+E A+R ++E + +PL L + L ++ + R ++ + LR P + FG+ ++ S W +++ + LP D++ L A I ++H A
Sbjct: 354 MNMNKMISDHEWHSLILKAKGIRQALSVRIVN-----HVHKSS-------------------------RSGHMEYLIRVVDVESGVVWFAKKRFKELHKLHRKLCRLSGRVNDCIFPTRRNHG------RNSARELASDRAPVLEAFLRTTATLV---TPPPMTFLNGVALKQLQQFLDLPHEEILLRNKTQPIA---RELRVYVYHTVNDPTSPEGKACNKFLAKLRQHGSDVGTNLLEEAGTILDDVQEYMLEHRFDEIKDHVDRVMTYYLSADLAEETLGRRNSYVNNLLDDDVLSSSEKLQQLVSDAIRHELEEKICVPLMADLTAYLRVKVMQKERQFRQRIFQLRGKPQTYFGIPVNKI-SFSSWRTVIESIKEIDDAFLPLDKMRKLVATAHQIHSVHRA 717
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Match: A0A7R9UDL5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDL5_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 7.900e-6 Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 3379 LAAMGADDFLPLFAFTLVHSAPEDLLVLQTLLTHLMDAQCSLAEEGYLVATLEAAVSFISQVY 3567
+AAM AD+FLPLFA+ LVH+ P LL+LQ L+ L+D ++ E GY ATL+A V + Q++
Sbjct: 388 MAAMSADEFLPLFAYVLVHARPRRLLLLQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 450
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Match: A0A7S1U3A3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3A3_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.140e-5 Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 3379 LAAMGADDFLPLFAFTLVHSAPEDLLVLQTLLTHLMDAQCSLAEEGYLVATLEAAVSFISQVY 3567
L AM AD+FLPLFA+ LVH+ P LL+ Q L+ L+D ++ E GY ATL+A V + Q++
Sbjct: 156 LGAMSADEFLPLFAYVLVHARPRRLLLAQLLVPALLDPDDAVGERGYHCATLQAGVQLVLQLW 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig727.15241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig727.15241.1 >prot_H-paniculata_contig727.15241.1 ID=prot_H-paniculata_contig727.15241.1|Name=mRNA_H-paniculata_contig727.15241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1157bp MSTAANTTFRSENGDCMASSPSNSRSSSRSSRSDQRSVSRKHSSDSISNSback to top mRNA from alignment at H-paniculata_contig727:7833..32981- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig727.15241.1 ID=mRNA_H-paniculata_contig727.15241.1|Name=mRNA_H-paniculata_contig727.15241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=25149bp|location=Sequence derived from alignment at H-paniculata_contig727:7833..32981- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig727:7833..32981- >mRNA_H-paniculata_contig727.15241.1 ID=mRNA_H-paniculata_contig727.15241.1|Name=mRNA_H-paniculata_contig727.15241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6942bp|location=Sequence derived from alignment at H-paniculata_contig727:7833..32981- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |