mRNA_H-paniculata_contig12386.1497.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12386.1497.1
Unique NamemRNA_H-paniculata_contig12386.1497.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438FC14_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FC14_VITVI)

HSP 1 Score: 190 bits (483), Expect = 5.610e-51
Identity = 121/353 (34.28%), Postives = 189/353 (53.54%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN---------PCMLKKI-VD--------GEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPDMLGASALSNGGK------PKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            EM+SM +NGVW+ +  P+ +  +  K +++ K    G + +YK RLVA+G  Q EG+ Y E  SP+ +  S R+++A  A  D EL   D + AFL  +IDE +Y+  PEN          C LK+  VD        G   ++++++V +IL  + D  ++      L  +F +KDLG+A F +G  + R+R    L L Q  Y+  +   FG+   +      G + ++ G K      PK  LE+K+M +F Y  AVG+LM     TRP IA  V  + R+  NPG  H K   ++++YL  T ++ +TY  +     +  ++DSDF  CL++RRS SG + MLA GA+S
Sbjct:  438 EMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKREHVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAP-----GDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVS 784          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438E557_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E557_VITVI)

HSP 1 Score: 186 bits (472), Expect = 1.780e-50
Identity = 114/335 (34.03%), Postives = 181/335 (54.03%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPENPCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPDMLGASALSNGGK------PKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            EM+SM +NGVW+ +  P+ +  +  K +++ K    G + +YK RLVA+G  Q EG+ Y E  SP+ +  S R+++A  A  D EL   D + AFL  +IDE +Y+  PEN          E  ++++++V +IL  + D  ++      L  +F +KDLG+A F +G  + R+R    L L Q  Y+  +   FG+   +      G + ++ G K      PK  LE+K+M +F Y   VG+LM     TRP IA  V  + R+  N G  H K   ++++YL  T ++ +TY  +     +  ++DSDF  CL++RRS SG + MLA GA+S
Sbjct:  237 EMKSMKDNGVWDLVELPEGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLWEQIIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAP-----GDTPVAKGDKFSLHQCPKNELEKKDMERFPYASVVGSLMYAQVCTRPDIAYIVGMLGRYLSNLGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVS 565          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438I797_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438I797_VITVI)

HSP 1 Score: 184 bits (468), Expect = 1.150e-48
Identity = 116/357 (32.49%), Postives = 184/357 (51.54%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN----------------------PCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPDMLGASALSNGGK------PKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            EM+SM +NGVW+ +  P+ +  +  K +++ K    G + +YK RL+A+G  Q EG+ Y E  SP+ +  S R+++A  A  D EL   D + AFL  +IDE +Y+  PEN                       C+  K   G   ++++++V +IL  + D  ++      L  +F +KDLG+A F +G  + R+R    L L Q  Y+  +   FG+   +      G + ++ G K      PK  LE+K+M +F Y  AVG+LM      RP IA  V  + R+  NPG  H K   ++++YL  T ++ +TY        +  ++DSDF  CL++RRS SG + MLA GA+S
Sbjct:  547 EMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLIAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETKGFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNCAP-----GDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCMRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRSN-HLEIVGYSDSDFAGCLDSRRSTSGYIFMLAGGAVS 896          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A2P6S2B9_ROSCH (Putative RNA-directed DNA polymerase n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S2B9_ROSCH)

HSP 1 Score: 177 bits (449), Expect = 1.270e-47
Identity = 121/375 (32.27%), Postives = 186/375 (49.60%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN---------PCMLKK----------------------------IVD--------GEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRM--PDMLGASALSNGGKPKTLEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            E++SM  N VWE +  P+    V  K +++ K   +G +E+YK RLVA+G  Q EG+ Y E  SP+    S+R+++A  A  D EL   D + AFL  +++EE+++  PE           C LKK                            IVD        G   + +I++V +IL  + D  ++      L  +F++KD+G+A + +G  + R+R    L L Q  Y++ + E FG+EK S    P   G            LE K M +  Y  AVG+L+   T TRP I+ AV  + R+  NPG  H KA  K+++YL  T E+ +TY  +     +  ++DSD G CL+T +S SG + +LA GA+S
Sbjct:   39 ELKSMDQNKVWELVELPEGCKRVGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTVVSFGFKENIVDRCIYLKVSGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRDRSRGLLGLSQKAYIERVLERFGMEKCSPSIAPIQKGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRYQSNPGMDHWKATKKVMRYLQGTKEYMLTYR-RSDNLEVVGYSDSDLGGCLDTGKSTSGYLFLLAGGAVS 412          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438FIW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FIW7_VITVI)

HSP 1 Score: 182 bits (461), Expect = 1.270e-47
Identity = 114/348 (32.76%), Postives = 185/348 (53.16%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN-----PCMLKKIVD--------GEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPDMLGASALSNGGK------PKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            E++SM +NGVW+ +  P+ +  +  K +++ K    G + +YK RL A+G  Q EG+ Y E  SP+ +  S R+++A  A  D EL   D + AFL  +IDE +Y+  PEN        L+  VD        G   ++++++V +IL  + D  ++      L  +F +KDLGDA F +G  + R+R    L L Q  Y+  +   FG+   +      G + ++ G K      PK  LE+K+M +F Y  A+G++M     TRP IA  V  + R+  N G  H K   ++++YL  T ++ +TY  +     +  ++DS+F  CL++RRS SG + MLA GA+S
Sbjct:  713 EIKSMKDNGVWDLVELPESVKPIGCKWIFKTKRDSKGNIVRYKARLAAKGFTQKEGIDYKETFSPVLSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLENTVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGDASFVLGIQIYRDRPRGILGLSQKAYIDKVLSRFGMSNCAP-----GDTLVAKGDKFSLHQCPKNELEKKDMERFPYASAIGSVMYAQFCTRPDIAYIVGMLGRYLSNLGMDHWKKAKRVMRYLQRTKDYMLTYH-RSSHLEIVGYSDSNFAGCLDSRRSTSGYIFMLAGGAVS 1054          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438GQ37_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GQ37_VITVI)

HSP 1 Score: 181 bits (459), Expect = 1.430e-47
Identity = 114/331 (34.44%), Postives = 174/331 (52.57%), Query Frame = 1
Query:    1 KEMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPENPCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVE--KTSRMPDMLGASALSNGGKPKTLEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            +E +SM +N VWE +  P     +  K +++ K   +G VE+YK RL+A+G  Q EG+ + E  SP+ T  S R+++A  A  D EL   D + AFL  DIDE +Y        M  K +       ++++V +IL    D +++      L   F++KDLGDA F +G  + R+R    L L Q  Y+  + + +G++  K    P   G     N     +LE +EM K  Y  AVG+LM     TRP IA  V  + R+  NPG  H +A  ++++YL  T E+ +TY  +     +  ++DSDF  C ++RRS SG + +LA GAIS
Sbjct:  419 EEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLIAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIDETIY--------MWSKYI------FLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMNHWRAAKRVMRYLQRTKEYMLTYR-RLDQLELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAIS 734          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438EN28_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN28_VITVI)

HSP 1 Score: 177 bits (449), Expect = 6.390e-47
Identity = 114/348 (32.76%), Postives = 182/348 (52.30%), Query Frame = 1
Query:    4 EMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN---------PCMLKKIVDGEVEM---------VVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTS-RMPDMLGASALSNGGKPKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            EM SM  N VW+ +  P  +  +  K +++ K    G +E+YK RLVA+G  Q EG+ YTE  SP+    S+R++LA  A  D EL+  D + AFL  +++EE+Y++ PE           C LKK + G  +           ++++V +IL    D  ++      L   F +KD+G+A + +G  + R+R    L L Q  Y+  + E F ++  S  +  ++     +    PK  LE ++M    Y  AVG+LM     TRP IA AV  + R+  NPG  H KA  K+++YL  T ++ + Y  +     +  ++DSDF  C+++R+S SG + +LA GAIS
Sbjct:  260 EMSSMKCNDVWDLVELPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYGLKQASRQCGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYR-RTSNLEVVGYSDSDFAGCVDSRKSTSGYIFILAGGAIS 606          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438J629_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438J629_VITVI)

HSP 1 Score: 171 bits (434), Expect = 8.660e-47
Identity = 111/358 (31.01%), Postives = 181/358 (50.56%), Query Frame = 1
Query:    1 KEMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN----------------------PCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPDMLGASALSNGGK------PKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            +EM+SM +NGVW+ +  P+ +  +  K +++ K +  G + +YK RLVA+   Q E + Y E  SP+ +N S R+++A  A  D +L   D +  FL  +IDE +Y+  PEN                       C+  K   G   ++++++V +IL  + D  ++      L  +F +KDLGDA F +G  + R+     L L Q  Y+  +   FG+   +      G + ++ G K      PK  LE+K+M KF Y  A+G+LM     TRP I   V  + R+  NP   H K   ++++YL     + +TY  +     +  ++DSDF  CL++RRS+S  + MLA GA+S
Sbjct:    3 EEMKSMKDNGVWDLVELPKCIKPIGCKWIFKTKQNSKGNIARYKARLVAKCFTQKEDIDYNETFSPISSNDSFRIIMALVAHYDLKLHQMDVKTVFLNGNIDETIYMVQPENFESNDSKQLVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETKRFLFSKFDMKDLGDASFVLGIQIYRDHPRGILGLSQKAYIDKVLSRFGMSNCAP-----GDTHVAKGDKFSLHQCPKNELEKKDMEKFPYASAIGSLMYAQVCTRPDIVYIVGMLGRYLSNPSIDHWKKAKRVMRYLQRIKNYMLTYR-RSSHLEIVGYSDSDFPGCLDSRRSISSYIFMLAGGAVS 353          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 174 bits (442), Expect = 8.800e-47
Identity = 117/376 (31.12%), Postives = 188/376 (50.00%), Query Frame = 1
Query:    1 KEMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETPEN---------PCMLKKI------------------------------------VDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEK-TSRMPDMLGASALSNGGKPKT-LEEKEMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            +E++SM +NGVW+ I  P +   V  K +++ K    G +E++K RLVA+G  Q EG+ Y +  SP+    S+R+++A  A  D EL   D + AFL  ++DE++Y+E PE           C LKK                                     V G   + +I++V +IL  + D  ++      L   F + D+G+A++ +   + R+R    L L Q  Y+  + E F ++  +S +  +L    LS    P+  +E ++M K  Y  AVG+LM   T TRP I+ AV  + R+  +PG  H KA  K+++YL  T ++ +TY        +  ++DSD+G CL++ +S SG V MLA GAIS
Sbjct:   15 EELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSE-QLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAIS 389          
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Match: A0A2N9FUY1_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FUY1_FAGSY)

HSP 1 Score: 174 bits (442), Expect = 1.810e-46
Identity = 114/345 (33.04%), Postives = 183/345 (53.04%), Query Frame = 1
Query:    1 KEMRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGLRQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADIDEEMYIETP--------------ENPCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQLGGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTSRMPD-MLGASALSNGGKPKTLEEK-EMTKFRYRKAVGALM*TATITRPGIACAVHAITRFCENPGPAHKKAVIKIVQYLLHTMEWGITYDGQRCGFRMEAFADSDFGACLNTRRSVSGGVLMLAKGAIS 987
            +EM SM  N VWE +  P     +  K + + K   DG +++YK RLVA+G  Q EG+ Y +  SP+   AS+R++L+  A +D EL   D + AFL  ++DEE+Y+  P              E+ CM  K     + +++ ++V +IL    D   +      L   F++KD+G+A+F +G  +TR+R  + L L Q  Y++ + E F +  +  +   M     LS    PK  EEK +M+K  Y  A+ +LM     TRP I  AV  ++R+  NPGPAH +AV +I++YL  T +  + Y G     R+  ++D+D+ +  + R+S SG   +L  GA+S
Sbjct:   93 EEMSSMDKNNVWELVDLPPGHKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKMIEEDHCMYLKRSKRSI-LILSLYVDDILLVGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIRSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCYHGG--DLRLTGYSDADWASDKDERKSTSGYAFILGGGAVS 434          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12386.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438FC14_VITVI5.610e-5134.28Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E557_VITVI1.780e-5034.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A438I797_VITVI1.150e-4832.49Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6S2B9_ROSCH1.270e-4732.27Putative RNA-directed DNA polymerase n=2 Tax=Rosa ... [more]
A0A438FIW7_VITVI1.270e-4732.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GQ37_VITVI1.430e-4734.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EN28_VITVI6.390e-4732.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A438J629_VITVI8.660e-4731.01Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JMN5_VITVI8.800e-4731.12Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9FUY1_FAGSY1.810e-4633.04Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12386contigH-paniculata_contig12386:3451..4569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score133.3
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog5111.M1W394
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size987
Cds size717
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12386.1497.1prot_H-paniculata_contig12386.1497.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12386 3715..4563 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.5313146-UTR-H-paniculata_contig12386:3450..37141622928957.5313146-UTR-H-paniculata_contig12386:3450..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12386 3451..3714 -
1691480681.586698-UTR-H-paniculata_contig12386:3450..37141691480681.586698-UTR-H-paniculata_contig12386:3450..3714Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12386 3451..3714 -
1622928957.570559-UTR-H-paniculata_contig12386:4563..45691622928957.570559-UTR-H-paniculata_contig12386:4563..4569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12386 4564..4569 -
1691480681.6204488-UTR-H-paniculata_contig12386:4563..45691691480681.6204488-UTR-H-paniculata_contig12386:4563..4569Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12386 4564..4569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.5478837-CDS-H-paniculata_contig12386:3714..41031622928957.5478837-CDS-H-paniculata_contig12386:3714..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12386 3715..4103 -
1691480681.6025665-CDS-H-paniculata_contig12386:3714..41031691480681.6025665-CDS-H-paniculata_contig12386:3714..4103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12386 3715..4103 -
1622928957.5595264-CDS-H-paniculata_contig12386:4235..45631622928957.5595264-CDS-H-paniculata_contig12386:4235..4563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12386 4236..4563 -
1691480681.6120772-CDS-H-paniculata_contig12386:4235..45631691480681.6120772-CDS-H-paniculata_contig12386:4235..4563Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12386 4236..4563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12386.1497.1

>prot_H-paniculata_contig12386.1497.1 ID=prot_H-paniculata_contig12386.1497.1|Name=mRNA_H-paniculata_contig12386.1497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
MRSMVNNGVWEQIARPQDMLVVRAKMLYERKASKDGEVEKYKCRLVAQGL
RQIEGVHYTEKDSPMPTNASMRMLLATAAAKDGELRHFDAEQAFLEADID
EEMYIETPENPCMLKKIVDGEVEMVVIVHVSEILARAKDHAMMEWFATQL
GGRFKLKDLGDADFYMGDHVTRNRKARELKLGQSMYVQSMAETFGVEKTS
RMPDMLGASALSNGGKPKTLEEKEMTKFRYRKAVGALM*
back to top

mRNA from alignment at H-paniculata_contig12386:3451..4569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12386.1497.1 ID=mRNA_H-paniculata_contig12386.1497.1|Name=mRNA_H-paniculata_contig12386.1497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-paniculata_contig12386:3451..4569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGAGATGCGTAGTATGGTAAACAACGGGGTATGGGAGCAGATAGCCCG ACCACAGGACATGCTTGTGGTGAGAGCAAAGATGCTTTACGAACGCAAGG CCAGCAAGGATGGCGAGGTGGAGAAGTATAAATGTAGACTTGTCGCCCAG GGCCTCCGGCAGATCGAAGGGGTACACTACACCGAGAAGGACTCACCGAT GCCGACGAACGCATCCATGCGGATGCTCTTGGCGACCGCAGCGGCGAAGG ACGGAGAGCTGCGACATTTCGACGCAGAACAGGCGTTTCTGGAGGCGGAC ATTGATGAGGAGATGTACATCGAGACCCCCGAAAGTTTCTAACATTTCCC GGGAGCAGTGGGTGAGCCGAAGAAGGCAATCTACGGGCTCGTTCAGGCGG GGCAATGCCGGAACTTCAAGTTCTGCGACGACATGTCGGCAATCGGGTTC GAGCAGTCAAGGGCAGACCCGTGTATGTTGAAGAAGATTGTCGACGGAGA GGTGGAAATGGTGGTTATCGTGCACGTGAGTGAAATTCTTGCCCGCGCGA AGGACCACGCGATGATGGAGTGGTTCGCAACCCAGCTAGGGGGAAGGTTC AAGCTGAAGGACTTAGGTGACGCCGACTTCTACATGGGTGATCATGTTAC CCGAAACAGGAAGGCGCGCGAGCTGAAACTTGGTCAATCCATGTACGTGC AGTCGATGGCGGAAACATTCGGTGTCGAGAAGACGAGCAGGATGCCAGAC ATGTTGGGAGCATCAGCACTATCAAACGGAGGCAAACCGAAGACCCTGGA AGAGAAGGAGATGACGAAATTCCGATATCGAAAGGCGGTGGGGGCGCTAA TGTGAACGGCGACGATAACGCGACCGGGTATAGCGTGCGCAGTACATGCC ATTACAAGGTTCTGTGAAAACCCAGGGCCAGCACACAAGAAGGCGGTGAT TAAGATAGTGCAGTATTTATTACACACGATGGAATGGGGCATCACATATG ATGGACAACGCTGTGGGTTTAGGATGGAAGCATTTGCAGACTCGGATTTC GGAGCCTGCTTGAACACTAGACGCTCGGTATCTGGTGGAGTCCTGATGTT GGCCAAGGGGGCGATAAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12386:3451..4569-

>mRNA_H-paniculata_contig12386.1497.1 ID=mRNA_H-paniculata_contig12386.1497.1|Name=mRNA_H-paniculata_contig12386.1497.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig12386:3451..4569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAGTATGGTAAACAACGGGGTATGGGAGCAGATAGCCCGACCACA
GGACATGCTTGTGGTGAGAGCAAAGATGCTTTACGAACGCAAGGCCAGCA
AGGATGGCGAGGTGGAGAAGTATAAATGTAGACTTGTCGCCCAGGGCCTC
CGGCAGATCGAAGGGGTACACTACACCGAGAAGGACTCACCGATGCCGAC
GAACGCATCCATGCGGATGCTCTTGGCGACCGCAGCGGCGAAGGACGGAG
AGCTGCGACATTTCGACGCAGAACAGGCGTTTCTGGAGGCGGACATTGAT
GAGGAGATGTACATCGAGACCCCCGAAAATGCGTAGTATGGTAAACAACG
GGGTATGGGAGCAGATAGCCCGACCACAGGACATGCTTGTGGTGAGAGCA
AAGATGCTTTACGAACGCAAGGCCAGCAAGGATGGCGAGGTGGAGAAGTA
TAAATGTAGACTTGTCGCCCAGGGCCTCCGGCAGATCGAAGGGGTACACT
ACACCGAGAAGGACTCACCGATGCCGACGAACGCATCCATGCGGATGCTC
TTGGCGACCGCAGCGGCGAAGGACGGAGAGCTGCGACATTTCGACGCAGA
ACAGGCGTTTCTGGAGGCGGACATTGATGAGGAGATGTACATCGAGACCC
CCGAAAACCCGTGTATGTTGAAGAAGATTGTCGACGGAGAGGTGGAAATG
GTGGTTATCGTGCACGTGAGTGAAATTCTTGCCCGCGCGAAGGACCACGC
GATGATGGAGTGGTTCGCAACCCAGCTAGGGGGAAGGTTCAAGCTGAAGG
ACTTAGGTGACGCCGACTTCTACATGGGTGATCATGTTACCCGAAACAGG
AAGGCGCGCGAGCTGAAACTTGGTCAATCCATGTACGTGCAGTCGATGGC
GGAAACATTCGGTGTCGAGAAGACGAGCAGGATGCCAGACATGTTGGGAG
CATCAGCACTATCAAACGGAGGCAAACCGAAGACCCTGGAAGAGAAGGAG
ATGACGAAATTCCGATATCGAAAGGCGGTGGGGGCGCTAATGTGAACCCG
TGTATGTTGAAGAAGATTGTCGACGGAGAGGTGGAAATGGTGGTTATCGT
GCACGTGAGTGAAATTCTTGCCCGCGCGAAGGACCACGCGATGATGGAGT
GGTTCGCAACCCAGCTAGGGGGAAGGTTCAAGCTGAAGGACTTAGGTGAC
GCCGACTTCTACATGGGTGATCATGTTACCCGAAACAGGAAGGCGCGCGA
GCTGAAACTTGGTCAATCCATGTACGTGCAGTCGATGGCGGAAACATTCG
GTGTCGAGAAGACGAGCAGGATGCCAGACATGTTGGGAGCATCAGCACTA
TCAAACGGAGGCAAACCGAAGACCCTGGAAGAGAAGGAGATGACGAAATT
CCGATATCGAAAGGCGGTGGGGGCGCTAATGTGA
back to top