mRNA_H-paniculata_contig6973.14917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6973.14917.1
Unique NamemRNA_H-paniculata_contig6973.14917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A6H5JKL4_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL4_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 7.750e-65
Identity = 159/301 (52.82%), Postives = 184/301 (61.13%), Query Frame = 1
Query:    1 LQGLCGRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLR--------SXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAA-------------------PLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSG--IAGAIVNVAWNALSEQ-----AKQAGG-----ETLAFAGGGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSNGRIGRGSS-DKDAASAVAFLLSSRAGFVTGQNLVVDGAPSR 783
            LQGL GRKVAVTG+LRGCGPAIVKRLLQ+GA+V+AAD GMS+++A AAGLR        S              RL+F D G  GDEDGA RL+ +C E+FGGMDGLVCNT+A +      T  A                   PLED EP  WA A+T ALTEP LA+KHALPLL+AA ++G   AG IVNV   +L        A    G     ETL  A GGL GLT+ALA+S+GP VRVNAVSV EG     +      RG    KDAASAV FLLS+RAG VTGQNLVVD   +R
Sbjct:  554 LQGLNGRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPAGDGDGASAAGTTPEADALAEGRLVFFDMGGAGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDETGGALPNGASFGGGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACATGKVSAGGIVNVVCTSLPASEIGLAAVSGAGVISNRETLTAAAGGLAGLTHALALSSGPYVRVNAVSVPEGSGRPAAGMTLTARGERVGKDAASAVTFLLSNRAGSVTGQNLVVDDGAAR 854          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: D8LLV4_ECTSI (Myosin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV4_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.420e-64
Identity = 159/301 (52.82%), Postives = 186/301 (61.79%), Query Frame = 1
Query:    1 LQGLCGRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLR--------SXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAA----------SSAPQQTATAAA---------PLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSG--IAGAIVNVAWNAL----------SEQAKQAGGETLAFAGGGLVGLTNALAVSAGPQVRVNAVSVSEGM------IDRGSSNGRIGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVD 768
            LQGL GRKVAVTG+LRGCGPAIVKRLLQ+GA+V+AAD GMS+++A AAGLR        S              RL+F D G PGDEDGA RL+ +C E+FGGMDGLVCNT+A           + P   +  A          PLED EP  WA A+T ALTEP LA+KHALPLL+AA + G   AG IVNV   +L          S     +  ETL  A GGL GLT+ALA+S+GP VRVNAVSV EG       +   +  GR+G     KDAASAV FLLS+RAG VTGQNLVVD
Sbjct:  992 LQGLNGRKVAVTGALRGCGPAIVKRLLQEGAAVIAADRGMSNEQATAAGLRPADDGDGASAAATTPEADALAEGRLVFFDMGGPGDEDGACRLSSLCVESFGGMDGLVCNTSAPAMLVGDEAGGALPNGGSFGAGSAGGDGIVNPLEDLEPSDWADALTGALTEPMLAVKHALPLLQAACAKGKVSAGGIVNVVCTSLPASGPGLAAVSGAGAISNRETLTAAAGGLAGLTHALALSSGPHVRVNAVSVPEGSGRPAAGMTATARGGRVG-----KDAASAVTFLLSNRAGSVTGQNLVVD 1287          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: D7CTY0_TRURR (Short-chain dehydrogenase/reductase SDR n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) TaxID=649638 RepID=D7CTY0_TRURR)

HSP 1 Score: 112 bits (280), Expect = 3.880e-26
Identity = 108/282 (38.30%), Postives = 140/282 (49.65%), Query Frame = 1
Query:   19 RKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAA------GSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSNGR-----------------IGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            R++ VTG  +G G A V  LL+ GA V AAD    D+EALA  LR+                ++       DE   + L        GG+DGLV N             +APLE     AW A +   LT   L +KHALP LRAA      G   ++ A+VNVA    S +A  +  +T A+A   GGLV LT+ALA+S GP VRVN VS   G I+ G+   R                 +GR  + +D A+AVA+LLS  +GFVTGQNLVVDG  +R +
Sbjct:    8 RRLLVTGGAQGIGLATVAYLLRCGARVAAADR---DEEALAE-LRARHPE------------VYAQRSDVSDEPSVAALMAAVSAHLGGLDGLVNNAGVM--------VSAPLEALSLSAWEAVLGTNLTGAFLCVKHALPHLRAAYGATRGGPEPVSSAVVNVA----STRALMSEPDTEAYAASKGGLVALTHALAISLGPAVRVNCVS--PGWIEVGALKKRAARTPPEHRPEDHAQHPVGRVGTPEDVAAAVAYLLSPESGFVTGQNLVVDGGMTRKM 259          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A550J594_9DELT (Glucose 1-dehydrogenase n=1 Tax=Desulfuromonas acetexigens TaxID=38815 RepID=A0A550J594_9DELT)

HSP 1 Score: 107 bits (266), Expect = 3.740e-24
Identity = 106/278 (38.13%), Postives = 136/278 (48.92%), Query Frame = 1
Query:   16 GRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTA---ASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVS---VSEGMIDRGSSNGRIGRGSSDK------------DAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            GR + VTG  +G G  IV+ LL  GA+VVAAD    D EA A   R               RLL +      DE    R  E     FG + GLV N A   A S P +    A  LEDW  V     +   LT   L  + ALPLLRA G     GA+VN+A    S +A Q+  E  A+A   GGLV LT+A+A+S GP+VRVNA+S   +  G + + S+   +    +D+            D A+  AFLL   AGF+TGQN VVDG  +R +
Sbjct:    6 GRTILVTGGAQGIGQGIVRYLLSHGANVVAAD---IDGEACAFLERELASP----------RLLTV-VADVADEIAVRRCLEEVHRRFGSLSGLVNNAALAHAHSGPLE----ALSLEDWNRV-----LAVNLTGAFLVTREALPLLRAVGD----GAVVNIA----STRALQSEAECEAYAASKGGLVALTHAMALSLGPEVRVNAISPGWIETGEMQKPSARHPVNHSDADRAQHPVGRVGLPEDIAALAAFLLGPEAGFITGQNFVVDGGMTRKM 252          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A2A2FWG1_9PSED (Oxidoreductase n=4 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A2A2FWG1_9PSED)

HSP 1 Score: 103 bits (256), Expect = 8.580e-23
Identity = 106/272 (38.97%), Postives = 131/272 (48.16%), Query Frame = 1
Query:   31 VTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMID-----------------RGSSNGRIGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            VTG+ RG G  I   LL+ G SVV AD      +A A  L                  + LD     DE    R  E  +E FG +DGLV N A  + P        PLE     AW   +T +LT   L  KHAL LLR +G     GAIVN+A    S +A Q+   T A+A   GGLV LT+A+AVS GP +RVNAVS   G ID                    S GR+G+    +D  + V+FLLS  AGF+TGQNLV DG  +R +
Sbjct:    4 VTGAARGIGKGIATSLLRAGWSVVIADIDELAGQAAAEELARLGVV----------EFVTLDVS---DEAAVIRCLERIEEDFGQLDGLV-NNAGIADPDS-----GPLEQLTLEAWNRWLTTSLTGSFLVSKHALRLLRESG-----GAIVNIA----STRALQSEANTEAYAASKGGLVALTHAMAVSLGPDIRVNAVS--PGWIDTRPPALQASDPLRALDHEQHSVGRVGQ---PEDIGALVSFLLSPEAGFITGQNLVADGGMTRQM 242          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A4S1CMN4_9DELT (SDR family oxidoreductase n=4 Tax=Geomonas TaxID=2651583 RepID=A0A4S1CMN4_9DELT)

HSP 1 Score: 103 bits (256), Expect = 9.340e-23
Identity = 107/274 (39.05%), Postives = 141/274 (51.46%), Query Frame = 1
Query:   16 GRKVA-VTGSLRGCGPAIVKRLLQDGASVVAAD-NGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSN------------GRIGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            G KVA VTG+ RG G  I K+LL +G +VV AD +G S D A AAGL +              RLL L      DE     + E     FG +D LV N A + A       AAP+ +     W+  +   LT   L  KHA+P L+ +      G+IVN++    S  A Q+  +T A++   GG+V LT+ALA+S GP+VRVN VS   G I  G+ +            GR+GR     D A  VA+L SSRAGF+TGQN VVDG  +R +
Sbjct:    7 GMKVALVTGAGRGIGYGIAKKLLSEGYAVVLADIDGASADTA-AAGLGAPE------------RLLSLQAD-VSDEQSVLSMVERSVARFGRLDLLVNNAALAGAH------AAPVHELPLEQWSRVIATNLTGVFLCAKHAVPHLKKSR-----GSIVNIS----STHALQSEADTEAYSASKGGVVALTHALAMSLGPEVRVNCVS--PGWIYNGAESELSQADHAQHPVGRVGRAD---DIAELVAYLASSRAGFITGQNFVVDGGMTRKM 246          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A1L3GI14_SYNAC (Short-chain dehydrogenase n=2 Tax=Syntrophotalea acetylenica TaxID=29542 RepID=A0A1L3GI14_SYNAC)

HSP 1 Score: 102 bits (253), Expect = 3.050e-22
Identity = 108/286 (37.76%), Postives = 130/286 (45.45%), Query Frame = 1
Query:    1 LQGLCGRKVA-VTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAG--GETLAFAGGGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSN--------------------GRIGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            +QG C   VA VTG  RG G AIV +LL  G  V  AD  +   EAL                     +  +D G   DE G +   +  +E FG +D L+ N  A   P        PLE     AW   +T  LT   L  KHA  LLR +      GAIVN+A    S +A Q+   GE  A + GGLV LT+ALAVS GP VRVN VS   G I    S                     GR+GR     D A  VAFL+S  AGF+TGQN VVDG  +R +
Sbjct:    3 MQGFCEEGVALVTGGARGIGRAIVDKLLAMGMRVAVADRDVKACEALTG----------QYARDGRLAVFCMDVG---DEAGVAAAMDQLREKFGRLDALINN--AGHGPAH----GTPLESLALEAWNHILTSNLTGAFLCCKHAAGLLRRSR-----GAIVNIA----STRALQSEPHGEAYAASKGGLVALTHALAVSLGPDVRVNCVS--PGWIAAADSQTQGTPGGPILRPEDHAQHPVGRVGR---PADIAEIVAFLVSPAAGFITGQNFVVDGGMTRRM 255          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A7J4ZNP3_9DELT (Glucose 1-dehydrogenase n=3 Tax=Oryzomonas TaxID=2855184 RepID=A0A7J4ZNP3_9DELT)

HSP 1 Score: 100 bits (250), Expect = 7.970e-22
Identity = 96/279 (34.41%), Postives = 130/279 (46.59%), Query Frame = 1
Query:    4 QGLCGRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSNGR---------------IGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            Q   GR   VTG  +G G  I KRLL++G +VV AD   +  +  A    S                + LD     DE       +     FG +D L+ N    S+P        P+E  E   W   +   LT   L  KHA+P LR+AG     GAIVN+A    S +A Q+  +T A++   GGLV LT+ALAVS GP +RVN VS     +D    +G+                GR    +D A  VA+L+S +AGF+TGQN +VDG  +R +
Sbjct:    3 QQTAGRVALVTGGGQGIGKGIAKRLLEEGMAVVIADRDAAAAQETAGEFGSLGDVLA----------VTLDVA---DEAAVVGALDQTLSRFGRLDALINNAGHGSSPP------GPVELLELSEWNRVLGTNLTGAFLCAKHAVPALRSAG-----GAIVNIA----STRALQSEADTEAYSASKGGLVALTHALAVSLGPHIRVNCVSPGWIAVDDWKKSGKRTAPELRPEDHGQHPAGRVGRPEDIAGMVAYLVSPQAGFITGQNFIVDGGMTRKM 253          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A6C0TTD0_9PSED (SDR family oxidoreductase n=4 Tax=Pseudomonas TaxID=286 RepID=A0A6C0TTD0_9PSED)

HSP 1 Score: 100 bits (249), Expect = 1.030e-21
Identity = 103/276 (37.32%), Postives = 133/276 (48.19%), Query Frame = 1
Query:   10 LCGRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMID------RGSSNGRI--------GRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            L GR   VTG+ RG G  +  RLL+DG SVV AD   +  +  A  L                  + LD     DE       E  +E FG +DGLV N A  + P        PLE     +W   +   LT   L  KHA+ LLR  G     GAIVN+A    S +A Q+  +T A+A   GGL+ LT+A+AVS GP++RVNAVS   G ID      + S   R+        GR     D A+ VAFLL   AGF+TGQN ++DG  +R +
Sbjct:    4 LDGRVALVTGAARGIGYGVATRLLRDGWSVVLADIDEAGGQEAAEELARLGTV----------EFVTLDVA---DEASVIACMERVEEDFGQLDGLV-NNAGIADPDN-----GPLEQLSLDSWNRLIGTNLTGAFLLSKHAVGLLRRRG-----GAIVNMA----STRAVQSEAQTEAYAASKGGLIALTHAMAVSLGPEIRVNAVS--PGWIDTRPPVQQASDPLRVVDHEQHAAGRVGQPADVAALVAFLLGPDAGFITGQNYLIDGGMTRQM 249          
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Match: A0A5B8R6T4_9ZZZZ (Glucose 1-dehydrogenase 2 n=4 Tax=root TaxID=1 RepID=A0A5B8R6T4_9ZZZZ)

HSP 1 Score: 99.8 bits (247), Expect = 1.660e-21
Identity = 104/273 (38.10%), Postives = 134/273 (49.08%), Query Frame = 1
Query:   19 RKVA-VTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGLRSXXXXXXXXXXXXXXRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLVCNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLRAAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAG--GGLVGLTNALAVSAGPQVRVNAVSVSEGMIDRGSSN-------------GRIGRGSSDKDAASAVAFLLSSRAGFVTGQNLVVDGAPSRTI 789
            R+VA VTG+ RG G AI  RLL DG +V+ AD   + + A A G  +                    T   GDE   + L E      G +D LV N A   AP      A PLE      W   +   LT   L  + A PLLRA GS    GAIVN+A    S +A+Q+   T A+A   GG++ LT+ALAVS GP VRVNAVS   G I   + +             G +GR    +D A+ VA+LLS+ AGFVT Q ++VDG  +R +
Sbjct:    6 RRVALVTGAARGIGRAIAARLLADGMAVIVADRDGAAETADALGGAAHGI-----------------TVDVGDEAAVTALIEAVSARHGRLDALV-NNAGHGAP------ARPLEAQAVADWHRVIATNLTGTYLCSRAAAPLLRA-GS----GAIVNIA----STRARQSEPHTEAYAASKGGILALTHALAVSLGPDVRVNAVS--PGWIAAAAEHEDLTAEDHAQHPAGHVGR---PEDVAAMVAYLLSAEAGFVTAQEMIVDGGMTRRM 240          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6973.14917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKL4_9PHAE7.750e-6552.82Myosin motor domain-containing protein n=1 Tax=Ect... [more]
D8LLV4_ECTSI1.420e-6452.82Myosin-like protein n=1 Tax=Ectocarpus siliculosus... [more]
D7CTY0_TRURR3.880e-2638.30Short-chain dehydrogenase/reductase SDR n=1 Tax=Tr... [more]
A0A550J594_9DELT3.740e-2438.13Glucose 1-dehydrogenase n=1 Tax=Desulfuromonas ace... [more]
A0A2A2FWG1_9PSED8.580e-2338.97Oxidoreductase n=4 Tax=Pseudomonadaceae TaxID=1356... [more]
A0A4S1CMN4_9DELT9.340e-2339.05SDR family oxidoreductase n=4 Tax=Geomonas TaxID=2... [more]
A0A1L3GI14_SYNAC3.050e-2237.76Short-chain dehydrogenase n=2 Tax=Syntrophotalea a... [more]
A0A7J4ZNP3_9DELT7.970e-2234.41Glucose 1-dehydrogenase n=3 Tax=Oryzomonas TaxID=2... [more]
A0A6C0TTD0_9PSED1.030e-2137.32SDR family oxidoreductase n=4 Tax=Pseudomonas TaxI... [more]
A0A5B8R6T4_9ZZZZ1.660e-2138.10Glucose 1-dehydrogenase 2 n=4 Tax=root TaxID=1 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6973contigH-paniculata_contig6973:8908..9702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue9.3e-59
Seed eggNOG ortholog2880.D8LLV4
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Exons1
Model size795
Cds size795
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.8336515-CDS-H-paniculata_contig6973:8907..97021622930838.8336515-CDS-H-paniculata_contig6973:8907..9702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6973 8908..9702 -
1691481475.4432712-CDS-H-paniculata_contig6973:8907..97021691481475.4432712-CDS-H-paniculata_contig6973:8907..9702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6973 8908..9702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6973.14917.1prot_H-paniculata_contig6973.14917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6973 8908..9702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6973.14917.1

>prot_H-paniculata_contig6973.14917.1 ID=prot_H-paniculata_contig6973.14917.1|Name=mRNA_H-paniculata_contig6973.14917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
LQGLCGRKVAVTGSLRGCGPAIVKRLLQDGASVVAADNGMSDDEALAAGL
RSADDGTPEAEALAAGRLLFLDTGHPGDEDGASRLAEVCQETFGGMDGLV
CNTAASSAPQQTATAAAPLEDWEPVAWAAAVTDALTEPALAMKHALPLLR
AAGSSGIAGAIVNVAWNALSEQAKQAGGETLAFAGGGLVGLTNALAVSAG
PQVRVNAVSVSEGMIDRGSSNGRIGRGSSDKDAASAVAFLLSSRAGFVTG
QNLVVDGAPSRTID*
back to top

mRNA from alignment at H-paniculata_contig6973:8908..9702-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6973.14917.1 ID=mRNA_H-paniculata_contig6973.14917.1|Name=mRNA_H-paniculata_contig6973.14917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig6973:8908..9702- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGGGCTTTGCGGTAGGAAGGTGGCTGTTACTGGCTCCCTGCGCGG TTGCGGCCCCGCAATCGTGAAACGCTTGCTCCAAGACGGAGCCTCGGTGG TGGCCGCCGACAACGGGATGTCCGACGATGAGGCGCTGGCCGCGGGTCTC CGAAGCGCCGACGACGGCACCCCTGAGGCGGAGGCGTTGGCGGCTGGCCG ACTGCTGTTCTTGGACACGGGACATCCGGGAGACGAGGACGGTGCCTCCC GGCTGGCCGAGGTGTGCCAAGAGACATTTGGTGGCATGGATGGTCTGGTG TGCAACACCGCGGCCAGCTCTGCGCCGCAGCAGACAGCAACAGCGGCGGC GCCACTGGAGGACTGGGAACCTGTCGCATGGGCGGCGGCGGTGACGGACG CATTGACAGAACCGGCGCTCGCGATGAAGCACGCGCTGCCATTGCTCCGC GCGGCGGGGTCATCCGGTATTGCTGGGGCCATCGTGAACGTTGCGTGGAA TGCGTTGTCAGAACAGGCGAAGCAGGCAGGCGGAGAGACGCTCGCATTTG CGGGTGGGGGACTCGTGGGGCTGACGAACGCGCTGGCGGTCAGCGCTGGC CCGCAAGTTCGGGTTAACGCGGTCAGTGTGTCGGAGGGCATGATCGACAG GGGTAGTAGCAATGGAAGGATCGGCCGGGGCTCTTCAGATAAGGATGCGG CCTCGGCAGTGGCGTTTTTGCTGTCGAGTCGCGCTGGGTTCGTGACGGGT CAAAACCTCGTTGTCGATGGCGCTCCATCACGAACGATCGATTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6973:8908..9702-

>mRNA_H-paniculata_contig6973.14917.1 ID=mRNA_H-paniculata_contig6973.14917.1|Name=mRNA_H-paniculata_contig6973.14917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig6973:8908..9702- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCAGGGGCTTTGCGGTAGGAAGGTGGCTGTTACTGGCTCCCTGCGCGG
TTGCGGCCCCGCAATCGTGAAACGCTTGCTCCAAGACGGAGCCTCGGTGG
TGGCCGCCGACAACGGGATGTCCGACGATGAGGCGCTGGCCGCGGGTCTC
CGAAGCGCCGACGACGGCACCCCTGAGGCGGAGGCGTTGGCGGCTGGCCG
ACTGCTGTTCTTGGACACGGGACATCCGGGAGACGAGGACGGTGCCTCCC
GGCTGGCCGAGGTGTGCCAAGAGACATTTGGTGGCATGGATGGTCTGGTG
TGCAACACCGCGGCCAGCTCTGCGCCGCAGCAGACAGCAACAGCGGCGGC
GCCACTGGAGGACTGGGAACCTGTCGCATGGGCGGCGGCGGTGACGGACG
CATTGACAGAACCGGCGCTCGCGATGAAGCACGCGCTGCCATTGCTCCGC
GCGGCGGGGTCATCCGGTATTGCTGGGGCCATCGTGAACGTTGCGTGGAA
TGCGTTGTCAGAACAGGCGAAGCAGGCAGGCGGAGAGACGCTCGCATTTG
CGGGTGGGGGACTCGTGGGGCTGACGAACGCGCTGGCGGTCAGCGCTGGC
CCGCAAGTTCGGGTTAACGCGGTCAGTGTGTCGGAGGGCATGATCGACAG
GGGTAGTAGCAATGGAAGGATCGGCCGGGGCTCTTCAGATAAGGATGCGG
CCTCGGCAGTGGCGTTTTTGCTGTCGAGTCGCGCTGGGTTCGTGACGGGT
CAAAACCTCGTTGTCGATGGCGCTCCATCACGAACGATCGATTGACTCCA
GGGGCTTTGCGGTAGGAAGGTGGCTGTTACTGGCTCCCTGCGCGGTTGCG
GCCCCGCAATCGTGAAACGCTTGCTCCAAGACGGAGCCTCGGTGGTGGCC
GCCGACAACGGGATGTCCGACGATGAGGCGCTGGCCGCGGGTCTCCGAAG
CGCCGACGACGGCACCCCTGAGGCGGAGGCGTTGGCGGCTGGCCGACTGC
TGTTCTTGGACACGGGACATCCGGGAGACGAGGACGGTGCCTCCCGGCTG
GCCGAGGTGTGCCAAGAGACATTTGGTGGCATGGATGGTCTGGTGTGCAA
CACCGCGGCCAGCTCTGCGCCGCAGCAGACAGCAACAGCGGCGGCGCCAC
TGGAGGACTGGGAACCTGTCGCATGGGCGGCGGCGGTGACGGACGCATTG
ACAGAACCGGCGCTCGCGATGAAGCACGCGCTGCCATTGCTCCGCGCGGC
GGGGTCATCCGGTATTGCTGGGGCCATCGTGAACGTTGCGTGGAATGCGT
TGTCAGAACAGGCGAAGCAGGCAGGCGGAGAGACGCTCGCATTTGCGGGT
GGGGGACTCGTGGGGCTGACGAACGCGCTGGCGGTCAGCGCTGGCCCGCA
AGTTCGGGTTAACGCGGTCAGTGTGTCGGAGGGCATGATCGACAGGGGTA
GTAGCAATGGAAGGATCGGCCGGGGCTCTTCAGATAAGGATGCGGCCTCG
GCAGTGGCGTTTTTGCTGTCGAGTCGCGCTGGGTTCGTGACGGGTCAAAA
CCTCGTTGTCGATGGCGCTCCATCACGAACGATCGATTGA
back to top