mRNA_H-paniculata_contig12363.1486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12363.1486.1
Unique NamemRNA_H-paniculata_contig12363.1486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12363.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12363contigH-paniculata_contig12363:1743..2546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size804
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12363.1486.1prot_H-paniculata_contig12363.1486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12363 1884..2366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.402762-UTR-H-paniculata_contig12363:1742..18831622928956.402762-UTR-H-paniculata_contig12363:1742..1883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12363 1743..1883 +
1691480681.1313374-UTR-H-paniculata_contig12363:1742..18831691480681.1313374-UTR-H-paniculata_contig12363:1742..1883Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12363 1743..1883 +
1622928956.4385684-UTR-H-paniculata_contig12363:2366..25461622928956.4385684-UTR-H-paniculata_contig12363:2366..2546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12363 2367..2546 +
1691480681.1553872-UTR-H-paniculata_contig12363:2366..25461691480681.1553872-UTR-H-paniculata_contig12363:2366..2546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12363 2367..2546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.4233932-CDS-H-paniculata_contig12363:1883..23661622928956.4233932-CDS-H-paniculata_contig12363:1883..2366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12363 1884..2366 +
1691480681.1448345-CDS-H-paniculata_contig12363:1883..23661691480681.1448345-CDS-H-paniculata_contig12363:1883..2366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12363 1884..2366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12363.1486.1

>prot_H-paniculata_contig12363.1486.1 ID=prot_H-paniculata_contig12363.1486.1|Name=mRNA_H-paniculata_contig12363.1486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
MKRFYQFPIQSPPSVNSHYVIPISKTAGKHAYGLITGTGSHRCSRQNSPA
KIIVQNAPQRNHRHIVKPTTTALVALDICVQTTFFFRNWPAALKGLILVS
FMYNRNKSNRHQSPRTRLCRPPQFATQFTNAVEVRLSRSCQTTQQQLQQP
QRENDCTAEN*
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mRNA from alignment at H-paniculata_contig12363:1743..2546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12363.1486.1 ID=mRNA_H-paniculata_contig12363.1486.1|Name=mRNA_H-paniculata_contig12363.1486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=804bp|location=Sequence derived from alignment at H-paniculata_contig12363:1743..2546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAAGCTTCTCGAGGTGGGCTACAAAACTGATCACGCAGCATTTTAAA
GGTTTTTTTTCGCCACATTTGTCGCGCATCAAACTCAATGGACATACAAA
CTTAAGCCTAAATCAACAAGATACACATAAAAAACGTGTGTATGAAACGT
TTCTATCAATTTCCCATTCAATCTCCACCATCTGTTAATAGTCATTATGT
AATCCCCATTTCAAAAACAGCGGGAAAGCATGCCTACGGTCTGATTACGG
GCACAGGCAGCCACCGCTGTTCAAGACAGAACAGTCCAGCGAAGATAATA
GTACAAAATGCACCACAGAGAAATCACAGGCATATTGTTAAGCCCACCAC
GACTGCTCTTGTAGCACTTGATATTTGTGTTCAGACAACATTTTTCTTCC
GAAATTGGCCAGCGGCACTAAAAGGTTTAATTCTAGTTTCTTTCATGTAC
AACAGAAATAAGTCGAACCGTCACCAATCGCCCCGCACACGCTTGTGCCG
ACCACCGCAGTTTGCGACACAATTTACCAACGCGGTGGAAGTCCGTCTCT
CGAGATCTTGTCAAACGACACAGCAACAGCTACAACAGCCACAGCGCGAA
AATGATTGCACAGCGGAAAATTAGTTCATTCGTGTCTATTCACAGCTTCA
CCACACCGAGTTACCAAACATAAAACCTGCAAGCTTTGTGATTTAACGTC
TGTAACGTCAGGTATTGTGACCATCCCTAACGGAGGAAACATTTCTTTCC
CTTCCAACAGACAGAGGAATACGAGCGAAGAAAAAGTCCCCCCCTCCCTT
TCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig12363:1743..2546+

>mRNA_H-paniculata_contig12363.1486.1 ID=mRNA_H-paniculata_contig12363.1486.1|Name=mRNA_H-paniculata_contig12363.1486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig12363:1743..2546+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACGTTTCTATCAATTTCCCATTCAATCTCCACCATCTGTTAATAG
TCATTATGTAATCCCCATTTCAAAAACAGCGGGAAAGCATGCCTACGGTC
TGATTACGGGCACAGGCAGCCACCGCTGTTCAAGACAGAACAGTCCAGCG
AAGATAATAGTACAAAATGCACCACAGAGAAATCACAGGCATATTGTTAA
GCCCACCACGACTGCTCTTGTAGCACTTGATATTTGTGTTCAGACAACAT
TTTTCTTCCGAAATTGGCCAGCGGCACTAAAAGGTTTAATTCTAGTTTCT
TTCATGTACAACAGAAATAAGTCGAACCGTCACCAATCGCCCCGCACACG
CTTGTGCCGACCACCGCAGTTTGCGACACAATTTACCAACGCGGTGGAAG
TCCGTCTCTCGAGATCTTGTCAAACGACACAGCAACAGCTACAACAGCCA
CAGCGCGAAAATGATTGCACAGCGGAAAATTAGATGAAACGTTTCTATCA
ATTTCCCATTCAATCTCCACCATCTGTTAATAGTCATTATGTAATCCCCA
TTTCAAAAACAGCGGGAAAGCATGCCTACGGTCTGATTACGGGCACAGGC
AGCCACCGCTGTTCAAGACAGAACAGTCCAGCGAAGATAATAGTACAAAA
TGCACCACAGAGAAATCACAGGCATATTGTTAAGCCCACCACGACTGCTC
TTGTAGCACTTGATATTTGTGTTCAGACAACATTTTTCTTCCGAAATTGG
CCAGCGGCACTAAAAGGTTTAATTCTAGTTTCTTTCATGTACAACAGAAA
TAAGTCGAACCGTCACCAATCGCCCCGCACACGCTTGTGCCGACCACCGC
AGTTTGCGACACAATTTACCAACGCGGTGGAAGTCCGTCTCTCGAGATCT
TGTCAAACGACACAGCAACAGCTACAACAGCCACAGCGCGAAAATGATTG
CACAGCGGAAAATTAG
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