mRNA_H-paniculata_contig12354.1484.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12354.1484.1
Unique NamemRNA_H-paniculata_contig12354.1484.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: D7G3R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R1_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 6.610e-63
Identity = 101/132 (76.52%), Postives = 115/132 (87.12%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVMGEPIVDSPGDAIRALVDSAGSIDMLVMHDKIITLRPFPPD 396
            REDFRPFAPSVLAEEA DWFEGLP DGSPYMS+TAPA+ G   +VPAVCHVD SSRLQTV  + +PLYHRLI+AFFK+T VPMVLNTSFNVMGEPIVDSP DAIR+L  S G+I MLV+HD+++T +PFPPD
Sbjct:  657 REDFRPFAPSVLAEEAEDWFEGLPPDGSPYMSLTAPAKPGVAERVPAVCHVDWSSRLQTVTEESSPLYHRLITAFFKMTGVPMVLNTSFNVMGEPIVDSPQDAIRSLHGSGGAIGMLVLHDRVLTAKPFPPD 788          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A835ZBM7_9STRA (Carbamoyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM7_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.150e-57
Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVMGEPIVDSPGDAIRALVDSAGSIDMLVMHDKIITLRPFPPD 396
            REDFRPFAPSVL E A +WF+GL  DGSPYMS+T PA+ G   ++PAVCHVDGSSR+QTV++  NPLYHRLISAF + T VPMVLNTSFN+ GEPIVDSP DA+R+ +DS G +D LV+H+ ++T +PFP D
Sbjct:  172 REDFRPFAPSVLEEFAGEWFDGLTGDGSPYMSLTVPAKPGKREQIPAVCHVDGSSRIQTVQQAANPLYHRLISAFHRATGVPMVLNTSFNIKGEPIVDSPEDALRSFLDSNGGMDALVLHNHVVTRKPFPLD 303          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A0G4FRZ2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FRZ2_VITBC)

HSP 1 Score: 173 bits (438), Expect = 1.320e-47
Identity = 81/132 (61.36%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVMGEPIVDSPGDAIRALVDSAGSIDMLVMHDKIITLRPFPPD 396
            RE FRPFAPSV+AEEA+ WFE LP  GSPYMSITA  R      VPAVCHVDG++RLQTV+  D PL++RL+  FFKLT +PMV+NTSFN+ GEPIV+ PGDA+R+ + + G+I  L+M D +I  RPFP +
Sbjct:  602 REAFRPFAPSVIAEEADGWFEDLPECGSPYMSITAAVREERRGLVPAVCHVDGTARLQTVRESDEPLFYRLLQQFFKLTGIPMVVNTSFNIKGEPIVEEPGDALRSFLATEGAIHTLIMGDVMIERRPFPTE 733          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A7S0JFX1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JFX1_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 1.530e-46
Identity = 73/130 (56.15%), Postives = 95/130 (73.08%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVMGEPIVDSPGDAIRALVDSAGSIDMLVMHDKIITLRPFP 390
            RE +RP APSVLAE A++WF+G+P  GSPYMS TA A+      +PAV HVDGS+RLQTV     PLYH LISAF+ L+ VPMVLNTSFN+ GEPIV+SP DA+R  + ++  + +L + D ++  RP+P
Sbjct:   33 REQWRPLAPSVLAERADEWFDGVPDGGSPYMSFTAYAKEHMREAIPAVVHVDGSARLQTVASSTAPLYHALISAFYALSGVPMVLNTSFNLAGEPIVESPADALRTFLSASAELSLLALGDALVRRRPYP 162          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: L1I708_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I708_GUITC)

HSP 1 Score: 154 bits (388), Expect = 6.630e-43
Identity = 81/137 (59.12%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPV-----DGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFN-VMGEPIVDSPGDAIRALVDSAGSIDMLVMHDK-IITLRPFP 390
            RE FRPFAPSVLA EA++WFEG+P      D SPYMSIT+  +     K+PAV HVDG+SRLQTV +   PLY+ LI AFF+LT VPMVLNTSFN +  EPI +SP D IR+ + + GSI+ L M  K II+ RPFP
Sbjct:  217 REAFRPFAPSVLAAEAHEWFEGIPAGSSQGDVSPYMSITSFVKDDKRDKIPAVTHVDGTSRLQTVTQDSEPLYYALIKAFFRLTGVPMVLNTSFNTIKSEPITESPSDGIRSFLSARGSIEKLFMESKWIISRRPFP 353          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A7S4WGL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WGL8_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.930e-42
Identity = 80/132 (60.61%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFE----GLPVDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVM-GEPIVDSPGDAIRALVDSAGSIDMLVMHDKIITLR 381
            RE FRPFAPS LAEEA++WF+        + SPYMSITA  +     ++PAV HVDGSSRLQTV  +  PLYHRLISAFF LT VPMVLNTSFN + GEPIV++P +AIR+ + S GSI+MLVM + +I  R
Sbjct:   91 RESFRPFAPSCLAEEASNWFDLGDNDFNDNVSPYMSITANVKESKRGQIPAVTHVDGSSRLQTVTAKAEPLYHRLISAFFDLTGVPMVLNTSFNTLKGEPIVETPSNAIRSFLSSMGSIEMLVMDEYVIRRR 222          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A7S0AKX3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AKX3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.680e-42
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFE-GLP-VDGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVM-GEPIVDSPGDAIRALVDSAGSIDMLVMHDKII 372
            RE FRPFAPS LAEE+  WF+ G P  + SPYMS+TA  +    + +PAV HVDGSSRLQTV  +  PLYH+LIS FFKLT VP+VLNTSFN +  EPIV++P +AIR+ + S GSI+MLVM D II
Sbjct:   15 RESFRPFAPSALAEESTKWFDLGAPGSNASPYMSLTAQVKESKRALIPAVTHVDGSSRLQTVTLEAEPLYHQLISTFFKLTGVPLVLNTSFNTLPSEPIVETPKNAIRSFLYSIGSIEMLVMGDYII 141          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A1E7FWU2_9STRA (CmcH_NodU-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWU2_9STRA)

HSP 1 Score: 149 bits (377), Expect = 9.430e-42
Identity = 81/133 (60.90%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDG--------SPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVM-GEPIVDSPGDAIRALVDSAGSIDMLVMHDKII 372
            RE FRPFAPSVLAE A++WF+   VDG        SPYMS TA  ++   +++PAV HVDGSSRLQTV  +  PLYH+LI+ FF++T VPMVLNTSFN + GEPIV+SP DAIR+ + S GSI+MLVM D II
Sbjct:  196 RESFRPFAPSVLAEHASEWFD---VDGNNEDEINFSPYMSQTAMVKKEKRARIPAVTHVDGSSRLQTVTPEAEPLYHKLITKFFEMTGVPMVLNTSFNTLPGEPIVESPEDAIRSFLCSMGSIEMLVMGDYII 325          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A7S2XJY0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJY0_9STRA)

HSP 1 Score: 154 bits (388), Expect = 8.900e-41
Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPV-----DGSPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVM-GEPIVDSPGDAIRALVDSAGSIDMLVMHDKII 372
            RE FRPFAPSVL EEA+DWFE   +     + SPYM++TA  +    S++PAV HVDGSSRLQTVK++  PLYH+LIS FFKLT VPMVLNTSFN +  EPIV++P +AIR+ + S GSI+MLVM D II
Sbjct:  666 RESFRPFAPSVLVEEASDWFELGDIALRDPNVSPYMTLTAQVKDSKRSEIPAVTHVDGSSRLQTVKKEAEPLYHQLISTFFKLTGVPMVLNTSFNTLPSEPIVETPSNAIRSFMCSMGSIEMLVMGDYII 795          
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Match: A0A7S4AMR8_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AMR8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.080e-40
Identity = 81/128 (63.28%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    1 REDFRPFAPSVLAEEANDWFEGLPVDG---SPYMSITAPARRGALSKVPAVCHVDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVM-GEPIVDSPGDAIRALVDSAGSIDMLVMHDKII 372
            RE FRPFAPSVLAE  +DWFE    D    SP+MS+TA  R+   +++PAV HVDGSSRLQTV  + + LYHRLI+ FF+LT VPMVLNTSFN + GEPIV+SP DAIR+ + S GSI+MLVM D II
Sbjct:  657 RESFRPFAPSVLAEHVSDWFEAEEYDDNNFSPFMSLTAMVRKEKRARIPAVTHVDGSSRLQTVTPEADGLYHRLITKFFELTGVPMVLNTSFNTLPGEPIVESPEDAIRSFLCSMGSIEMLVMGDYII 784          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12354.1484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3R1_ECTSI6.610e-6376.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBM7_9STRA3.150e-5766.67Carbamoyltransferase-domain-containing protein n=1... [more]
A0A0G4FRZ2_VITBC1.320e-4761.36Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S0JFX1_9EUKA1.530e-4656.15Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
L1I708_GUITC6.630e-4359.12Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4WGL8_9STRA2.930e-4260.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0AKX3_9STRA8.680e-4261.42Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A1E7FWU2_9STRA9.430e-4260.90CmcH_NodU-domain-containing protein (Fragment) n=1... [more]
A0A7S2XJY0_9STRA8.900e-4162.31Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4AMR8_9STRA3.080e-4063.28Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12354contigH-paniculata_contig12354:6615..7569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.2
Seed ortholog evalue4.5e-54
Seed eggNOG ortholog2880.D7G3R1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carbamoyltransferase C-terminus
EggNOG OGs2RKTV@2759,COG2192@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928956.2224407-CDS-H-paniculata_contig12354:6614..67061622928956.2224407-CDS-H-paniculata_contig12354:6614..6706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12354 6615..6706 -
1691480681.0779452-CDS-H-paniculata_contig12354:6614..67061691480681.0779452-CDS-H-paniculata_contig12354:6614..6706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12354 6615..6706 -
1622928956.2359672-CDS-H-paniculata_contig12354:7265..75691622928956.2359672-CDS-H-paniculata_contig12354:7265..7569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12354 7266..7569 -
1691480681.088994-CDS-H-paniculata_contig12354:7265..75691691480681.088994-CDS-H-paniculata_contig12354:7265..7569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12354 7266..7569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12354.1484.1prot_H-paniculata_contig12354.1484.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12354 6615..7569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12354.1484.1

>prot_H-paniculata_contig12354.1484.1 ID=prot_H-paniculata_contig12354.1484.1|Name=mRNA_H-paniculata_contig12354.1484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
REDFRPFAPSVLAEEANDWFEGLPVDGSPYMSITAPARRGALSKVPAVCH
VDGSSRLQTVKRQDNPLYHRLISAFFKLTSVPMVLNTSFNVMGEPIVDSP
GDAIRALVDSAGSIDMLVMHDKIITLRPFPPD
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mRNA from alignment at H-paniculata_contig12354:6615..7569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12354.1484.1 ID=mRNA_H-paniculata_contig12354.1484.1|Name=mRNA_H-paniculata_contig12354.1484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=955bp|location=Sequence derived from alignment at H-paniculata_contig12354:6615..7569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAAGACTTCCGACCTTTTGCGCCGAGCGTGCTAGCCGAAGAGGCGAA CGATTGGTTTGAAGGTTTGCCCGTGGACGGATCGCCGTACATGTCCATAA CGGCACCGGCTCGGCGGGGTGCCCTGTCGAAAGTGCCGGCGGTGTGTCAT GTGGACGGTTCTTCGCGCCTGCAGACCGTGAAGCGGCAAGATAACCCTCT GTACCACCGTCTGATTTCGGCGTTCTTCAAACTGACGAGTGTGCCGATGG TGCTTAATACTAGCTTCAATGTCATGGGCGAGCCTATCGTGGATTCTCCT GGAGGTGGGTGGATGGGTGAGCGGGCCTCCGCTGCTGCTGTTTTGGTTGT GAAGGAGAGGTGTACACTTTGTGTGTGTAGGTGGGGAGAGGGGGGCGTAT TTTGGTTGTTCAGCTGGACGTGTACGGTTATCGAAAGATGTAGAGTTTGG ACAGGGAAACGCATGACGTCTTGGAGCCCATTTTAGTGTGGTTTGGTCTG AGCACTTGTCGCAGGATGCTGCTGTAGTCTAGCTTCATGCTCACCACGCG GAGTTTCCTGATTTAGATGCCTTTGTGTTAGTTTTTGCGGTGTGTTATTC ACCTCCCAGCAATACGTCGCCTGTCTGTTTGCGCTGTAGGACTTCGATGA GAACATTTGCATGCAGTCCATGTACCGTTCTTGCCCCCCGTCAAGTCTCT TGCCTATCTGACGGTGTTTTTGTTTGTGTTGTCCACCGGGAAAAATGCAA ATATGCGCCATCTCACACTGCACGACAACATCATCACCACCACCACCACC ACCACCACCACCACCACCACCACCACCATCATCCATCATAATCAACGACA ACAAACGATCCAGATGCAATCAGAGCGCTGGTGGACTCTGCGGGGTCCAT CGACATGTTAGTCATGCACGACAAGATCATCACACTACGCCCTTTCCCAC CCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12354:6615..7569-

>mRNA_H-paniculata_contig12354.1484.1 ID=mRNA_H-paniculata_contig12354.1484.1|Name=mRNA_H-paniculata_contig12354.1484.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig12354:6615..7569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAAGACTTCCGACCTTTTGCGCCGAGCGTGCTAGCCGAAGAGGCGAA
CGATTGGTTTGAAGGTTTGCCCGTGGACGGATCGCCGTACATGTCCATAA
CGGCACCGGCTCGGCGGGGTGCCCTGTCGAAAGTGCCGGCGGTGTGTCAT
GTGGACGGTTCTTCGCGCCTGCAGACCGTGAAGCGGCAAGATAACCCTCT
GTACCACCGTCTGATTTCGGCGTTCTTCAAACTGACGAGTGTGCCGATGG
TGCTTAATACTAGCTTCAATGTCATGGGCGAGCCTATCGTGGATTCTCCT
GGAGAGGGAAGACTTCCGACCTTTTGCGCCGAGCGTGCTAGCCGAAGAGG
CGAACGATTGGTTTGAAGGTTTGCCCGTGGACGGATCGCCGTACATGTCC
ATAACGGCACCGGCTCGGCGGGGTGCCCTGTCGAAAGTGCCGGCGGTGTG
TCATGTGGACGGTTCTTCGCGCCTGCAGACCGTGAAGCGGCAAGATAACC
CTCTGTACCACCGTCTGATTTCGGCGTTCTTCAAACTGACGAGTGTGCCG
ATGGTGCTTAATACTAGCTTCAATGTCATGGGCGAGCCTATCGTGGATTC
TCCTGGAGATGCAATCAGAGCGCTGGTGGACTCTGCGGGGTCCATCGACA
TGTTAGTCATGCACGACAAGATCATCACACTACGCCCTTTCCCACCCGAC
ATGCAATCAGAGCGCTGGTGGACTCTGCGGGGTCCATCGACATGTTAGTC
ATGCACGACAAGATCATCACACTACGCCCTTTCCCACCCGAC
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