mRNA_H-paniculata_contig688.14799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig688.14799.1
Unique NamemRNA_H-paniculata_contig688.14799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig688.14799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig688contigH-paniculata_contig688:12418..13400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size255
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig688.14799.1prot_H-paniculata_contig688.14799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig688 12418..13398 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.2275229-CDS-H-paniculata_contig688:12417..124791622930823.2275229-CDS-H-paniculata_contig688:12417..12479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 12418..12479 -
1691481468.5179102-CDS-H-paniculata_contig688:12417..124791691481468.5179102-CDS-H-paniculata_contig688:12417..12479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 12418..12479 -
1622930823.2478752-CDS-H-paniculata_contig688:12860..129801622930823.2478752-CDS-H-paniculata_contig688:12860..12980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 12861..12980 -
1691481468.5265417-CDS-H-paniculata_contig688:12860..129801691481468.5265417-CDS-H-paniculata_contig688:12860..12980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 12861..12980 -
1622930823.2661278-CDS-H-paniculata_contig688:13328..133981622930823.2661278-CDS-H-paniculata_contig688:13328..13398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 13329..13398 -
1691481468.5345304-CDS-H-paniculata_contig688:13328..133981691481468.5345304-CDS-H-paniculata_contig688:13328..13398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig688 13329..13398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.2817745-UTR-H-paniculata_contig688:13398..134001622930823.2817745-UTR-H-paniculata_contig688:13398..13400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 13399..13400 -
1691481468.5425274-UTR-H-paniculata_contig688:13398..134001691481468.5425274-UTR-H-paniculata_contig688:13398..13400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig688 13399..13400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig688.14799.1

>prot_H-paniculata_contig688.14799.1 ID=prot_H-paniculata_contig688.14799.1|Name=mRNA_H-paniculata_contig688.14799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
MGPGGAGGGGGGAAWDEFGGPVEGDSFGDTPDRRSGMRVGPGRSGMAGGS
AGRSHIDMDGGIVGGGMSRGGGGGGGGPYDGPGP
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mRNA from alignment at H-paniculata_contig688:12418..13400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig688.14799.1 ID=mRNA_H-paniculata_contig688.14799.1|Name=mRNA_H-paniculata_contig688.14799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=983bp|location=Sequence derived from alignment at H-paniculata_contig688:12418..13400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGATGGGTCCAGGTGGCGCTGGCGGCGGCGGGGGTGGAGCTGCGTGGGAT
GAATTTGGTGGACCAGTAGAAGGTCAGTAATGCAGGGACTGGAGCGCACT
AGTAGGGCTTGTTGTTCTTTTCTGTACAATATTGGTAAAACTTGAGGTAT
CTGATTACTCATGTTGCTGGTGATTCTGGTGTTACGGCAAGACGATGGTC
AGGCGGTGGAAGCGACGAGTTGGCAATGAGTTGTTGTCTGTTTTTGAATT
ACCGTGGGTTGACGATTTTTGAGGTGGTTTCACCCGTTTGACCAAGGAGG
ATGGCTACCCTTCGCCTTACCGGTTTTTTTTGTACCTCATCTTTACATCG
TAGATGTATGCTTGTGGTTAGCCGTGACCCCTAGACCCTATCGGTGTTTC
GGGGTTCCATCCTGTCGTAGGTGATTCATTCGGGGACACCCCGGACCGCC
GTTCAGGAATGCGTGTTGGGCCGGGGCGCAGCGGTATGGCGGGCGGGTCT
GCAGGTCGCAGTCATATAGATATGGACGGTGGGATAGTCGGTAAGACTTA
AAAGTGTGGTCCCCGCTGTTAGTCTTGTGTCATGTAGAACACGTGTCGGG
GCAAACGTGTATGGTCAATAACTGAAAGTGTTGGTTGACGATCTTACACC
CTTTTTTCTTCGGTTGGCGTATGCATATCTGTCGAGCGTTTTGATTTTTC
GGAGTCATATATGAAGGATATGCTTCACATATTTGCTGGAAATACAGTAC
ATATGTTTGGGAAAATATGCTGTCAATTTGCCGATCGTTGCACTTCTTCC
GTGATGACGTTATTTCATCACTCGGAAACGTGCACTAGAGCACGGTACAA
CGCAGGACGTGCTGTAATCATAACTTGACGAATTGCATCAAATATTGAAA
TCCCTGTTCGTTGTTCAATAGGTGGGGGCATGTCGCGCGGCGGTGGCGGC
GGCGGCGGCGGCCCGTATGACGGTCCCGGGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig688:12418..13400-

>mRNA_H-paniculata_contig688.14799.1 ID=mRNA_H-paniculata_contig688.14799.1|Name=mRNA_H-paniculata_contig688.14799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig688:12418..13400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCCAGGTGGCGCTGGCGGCGGCGGGGGTGGAGCTGCGTGGGATGA
ATTTGGTGGACCAGTAGAAGATGGGTCCAGGTGGCGCTGGCGGCGGCGGG
GGTGGAGCTGCGTGGGATGAATTTGGTGGACCAGTAGAAGGTGATTCATT
CGGGGACACCCCGGACCGCCGTTCAGGAATGCGTGTTGGGCCGGGGCGCA
GCGGTATGGCGGGCGGGTCTGCAGGTCGCAGTCATATAGATATGGACGGT
GGGATAGTCGGTGATTCATTCGGGGACACCCCGGACCGCCGTTCAGGAAT
GCGTGTTGGGCCGGGGCGCAGCGGTATGGCGGGCGGGTCTGCAGGTCGCA
GTCATATAGATATGGACGGTGGGATAGTCGGTGGGGGCATGTCGCGCGGC
GGTGGCGGCGGCGGCGGCGGCCCGTATGACGGTCCCGGGCCTGTGGGGGC
ATGTCGCGCGGCGGTGGCGGCGGCGGCGGCGGCCCGTATGACGGTCCCGG
GCCT
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