mRNA_H-paniculata_contig6865.14784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6865.14784.1
Unique NamemRNA_H-paniculata_contig6865.14784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: D7FJ29_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ29_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.100e-47
Identity = 121/192 (63.02%), Postives = 143/192 (74.48%), Query Frame = 1 
Query:  142 EYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAE 717
            EYL+HRP MNL + RG      ++AP A+VVG+V + DHSCVWYGAV+RGD N V++GAHV VGDK+VI TV  V TGF+A   I SWV+                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+ ELWAGNPAKFVRKL  E++ ++E EA +RS +G+ HADEFNPYGQ Y+QAE
Sbjct:   14 EYLRHRPVMNLHEERGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGHVDTGFSAEVAIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEEDVAEIEAEAERRSALGELHADEFNPYGQGYVQAE 205
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A7S3GN43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN43_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.150e-32
Identity = 101/227 (44.49%), Postives = 137/227 (60.35%), Query Frame = 1 
Query:   52 MRVMMQLGGRALRAGGVAAPSV----SRRVLSTSEYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAEA 720
            M+    L GRALR  G A   +    S   +    + +HR  MNL D R  +    ++AP+A+VVGDVL+ D   +WYGAV+RGD N +++G    V D++VI+TV  ++TGF A+ +IG  V I  GA +TS  IG+R              XXXXXXXXXXXXXXXXXXXX  +LWAGNPA +VR +  EE   +++ A   +E+G+ H +EF P+G  Y  AEA
Sbjct:    1 MKRATHLFGRALRETGQAIDRLGLTFSNNEIYKETFSRHRAVMNLYDKRPIIAAGGFVAPNASVVGDVLLFDEVSIWYGAVLRGDKNKIKVGRLTNVQDRAVISTVANLNTGFPANVEIGDSVTIGHGALITSATIGNRVLVGQGSIIQEGAEXXXXXXXXXXXXXXXXXXXXSNQLWAGNPAVYVRDVTDEESVGIKKSAEHYAEVGRTHGEEFLPFGTTYQAAEA 227
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A7S1CBV1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBV1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.020e-31
Identity = 97/225 (43.11%), Postives = 127/225 (56.44%), Query Frame = 1 
Query:   43 SAVMRVMMQLGGRALRAGGVAAPSVSRRVLSTSEY----LKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAY 705
            S + R   +LG RALR  G A   V  + +  + +     +HRP  NL +   EV  N ++APSA V+G V +   S VWYGAVVRGD NAV +G +  +GD++V++T   V    AA+  IG +V + PGA L SC I +                XXXXXXXXXXXXXX       +LWAGNPA+FVR L  EE+   E +A   +++G EHA EF P G AY
Sbjct:   19 SMIKRFSYELG-RALRETGQALDRVGLKAVEKTTFKEPFARHRPVQNLYEKHPEVENNVFVAPSATVIGHVQILHKSSVWYGAVVRGDVNAVEIGGYSSIGDRAVVSTTKSVEGRPAATCRIGDYVTVGPGALLQSCTIENGVKIGAGAVVMEGALVXXXXXXXXXXXXXXGRRIPSGQLWAGNPAQFVRNLTKEELATFEGDAEFVADLGGEHAHEFLPAGGAY 242
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A7S2W3M4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3M4_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.430e-30
Identity = 106/232 (45.69%), Postives = 139/232 (59.91%), Query Frame = 1 
Query:   28 KEEERSAVMRVMMQLGGRALRAGGVAAPSVSRRVLS--TSEYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAE 717
            +EEE   +MR       RAL  G VAA + S  V +    +Y++HR  M +      V P+A++APSAA+VGDV V   S VWY AV+RGD N VR+ + V VGD++ I+TV+ + +GF A+T I S V+I  GASL SC +                XXXXXXXXXXXXXXXXXXXXX  E+W+GNP KF+         +  QEA    E+ ++HADEF P G A+ QA+
Sbjct:    5 REEEEEDMMR-------RALARGSVAARAFSTEVQARGAGQYVEHRTTMPMHGKYPLVAPDAFVAPSAAIVGDVEVGYGSSVWYNAVIRGDKNQVRISSGVSVGDRASISTVESLDSGFPATTTISSNVVIGAGASLVSCEVETDVFIGENAVVLEGAXXXXXXXXXXXXXXXXXXXXXAGEMWSGNPVKFLGPSSGTTAARASQEA----ELAEDHADEFLPQGTAFWQAK 225
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A5A8CT95_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CT95_CAFRO)

HSP 1 Score: 126 bits (316), Expect = 1.630e-30
Identity = 95/227 (41.85%), Postives = 125/227 (55.07%), Query Frame = 1 
Query:   49 VMRVMMQLGGRALRAGGVAAPSVSRRVLST----SEYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAE 717
            +M+ M    GRA+R  G A   V   V++       + +HRP MNL D      P+ ++AP+A VVG+V +   S VWYGAVVRGD   V +G +  + D++V+TT   V    +  T IGS V + PGA L SC++               XXXXXXXXXXXXXXX         +LWAGNPA+FVR L  EEM  +E +A   S + +EHA EF P    +L AE
Sbjct:    1 MMKRMFYEAGRAMREAGTALDRVGLDVMAKPIFKEPFARHRPVMNLFDKHPVTDPSVFVAPNATVVGNVTIAHKSNVWYGAVVRGDQARVEIGGYTNIQDRAVVTTAKEVEGQSSGVTKIGSHVTVCPGAVLRSCVVEGHNRIGAGAVVNDGXXXXXXXXXXXXXXXHPGRRIPGGQLWAGNPAEFVRNLTKEEMAALEIDAEAASSLAEEHAAEFLPTSAVHLDAE 227
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: W7TW63_9STRA (Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW63_9STRA)

HSP 1 Score: 126 bits (317), Expect = 2.650e-30
Identity = 110/231 (47.62%), Postives = 143/231 (61.90%), Query Frame = 1 
Query:   43 SAVMRVMMQLGGRALRAGGVAAPSVSRRVLSTSEYL----KHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAEAM 723
            S ++R  +   G+ALR  G A        L + ++     +HR   NL D R  V  NA+++PSA VVG+V + D   +WYGAV+RGD N+V++G    V D +VI TV  + +GF A+ DIG+ V I   A++TS  I D+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ELW GNP KF+RKLE EE+      A     + + H +EF P+G AYL AE +
Sbjct:   29 SRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKV 259
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A8J5XCB5_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCB5_DIALT)

HSP 1 Score: 124 bits (312), Expect = 5.700e-30
Identity = 91/214 (42.52%), Postives = 123/214 (57.48%), Query Frame = 1 
Query:   76 GRALRAGGVAAPSVSRRVLST----SEYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAY 705
            GR LR  G A   +  R  +      +  +HR  MNL + R  +  + ++APSA+V+GDV++ D   VWYGAVVR D N V +G +  + +++V+       TGF A+  IGSWV +  GA L +C + D C           XXXXXXXXXXXXXXXXXXX     E+W GNP  FVRKL  EE   +E++A   ++  KEH ++F PYG  Y
Sbjct:   10 GRMLRETGQALDRLGLRSQNNFVFRDKLSRHRAVMNLYEKRPSMAADVFVAPSASVIGDVILNDGVSVWYGAVVRSDVNPVTIGGYTNIQERAVVHAATSTPTGFKANCSIGSWVSVGQGAVLRACTVEDYCVIGAGSVLLEGXXXXXXXXXXXXXXXXXXXRVPSGEMWGGNPIAFVRKLSKEEAADIEKQANAVADAAKEHQEQFLPYGTTY 223
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A2D4CA92_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4CA92_PYTIN)

HSP 1 Score: 126 bits (316), Expect = 9.480e-29
Identity = 99/241 (41.08%), Postives = 139/241 (57.68%), Query Frame = 1 
Query:   19 NGKKEEERSAVMRVMMQLGGRALRAGGVAAPSVSRRVLSTS----EYLKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAEAMIA 729
            +G  +  R+ + +V  +LG R +R  G A   +  RVL  +     + +HR  MNL D R  +  + ++AP+A VVGDV + + + +WY  V+RGD N VR+G    V D++VI T      G  A T IG+ V I  G  L SC I +              XXXXXXXXXXXXXXXXXXXX   +LWAGNPAK++R +  +E+K + ++A +   + + H+DEF PYG AYL AE + A
Sbjct:  170 SGLLDVNRTMLRKVTFELG-RCVRETGQALDRLGMRVLGDNAFKERFSRHRQVMNLYDKRPVIAHDVWVAPNATVVGDVEICNDASIWYNVVIRGDLNQVRIGNRTNVQDRTVIHTASNSTPGLPAGTSIGNDVTIGHGCILYSCTIENNALIGMGSIILDGAXXXXXXXXXXXXXXXXXXXXPSGQLWAGNPAKYIRDISEDEVKDITKQATEYKGIAQTHSDEFLPYGTAYLDAERIKA 409
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: K3WLJ5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLJ5_GLOUD)

HSP 1 Score: 119 bits (299), Expect = 5.320e-28
Identity = 93/222 (41.89%), Postives = 130/222 (58.56%), Query Frame = 1 
Query:   76 GRALRAGGVAAPSVSRRVLSTSEY----LKHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAEAMIA 729
            GRA+R  G A   +  RVL  + +     +HR  MNL + R  +  + ++AP+A +VGDV + + + VWY  V+RGD N VR+G    + D++VI T    + G +    IG+ V +  G  L SC I +             XXXXXXXXXXXXXXXXXXXXXX  +LWAGNPAK+VR +  +E+  + ++A +   +   H+DEF PYG AYL AE + A
Sbjct:   10 GRAVRETGQALDRLGLRVLGDNSFNERFSRHRQVMNLYEKRPVIAHDVWVAPNATIVGDVEICNDASVWYNVVIRGDLNQVRIGNRTNIQDRTVIHTASTTNAGLSPGASIGNDVTVGHGCILYSCTIENNSLIGMGSIILDGXXXXXXXXXXXXXXXXXXXXXXSGQLWAGNPAKYVRDISDDEVSDIVKQAKEYKSIADTHSDEFLPYGTAYLDAEKIKA 231
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BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Match: A0A0V0QBK4_PSEPJ (Trimeric LpxA-like protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QBK4_PSEPJ)

HSP 1 Score: 120 bits (300), Expect = 6.180e-28
Identity = 92/221 (41.63%), Postives = 121/221 (54.75%), Query Frame = 1 
Query:   76 GRALRAGGVAAPSVSRRVLSTSEYL----KHRPFMNLSDIRGEVYPNAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVITTVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREELWAGNPAKFVRKLEPEEMKKVEQEAVKRSEMGKEHADEFNPYGQAYLQAEAMI 726
            GR +R  G+A      ++     YL    +HR  M L D+  +   N YI+P+  +VG+V V   S VWYGAV+RGD NAVR+G +  +GD   ITT   + TG  AS +IG++V ++ GASL SC I D                  XXXXXXXXXXXXXXXXX  +LWAGNP ++VR L+  E+        +   +  EH  EF P   AYLQ +  I
Sbjct:   16 GRMVRETGLAMDQYGSKLSKDIAYLEPLSRHRNLMPLYDLVPQYSYNTYISPNCTIVGEVQVGSESQVWYGAVIRGDLNAVRIGNNTSIGDNVSITTAGSLPTGIPASVNIGNFVQVQNGASLYSCTIDDEVVIGFKSVVLEGAKIERXXXXXXXXXXXXXXXXXXXQLWAGNPVQYVRDLQKSEIASNIDTCKRNLTLAVEHMYEFLPQNSAYLQKQNSI 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6865.14784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ29_ECTSI3.100e-4763.02Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S3GN43_9STRA4.150e-3244.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1CBV1_9STRA1.020e-3143.11Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2W3M4_9STRA1.430e-3045.69Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5A8CT95_CAFRO1.630e-3041.85Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
W7TW63_9STRA2.650e-3047.62Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A8J5XCB5_DIALT5.700e-3042.52Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A2D4CA92_PYTIN9.480e-2941.08Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
K3WLJ5_GLOUD5.320e-2841.89Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A0V0QBK4_PSEPJ6.180e-2841.63Trimeric LpxA-like protein n=1 Tax=Pseudocohnilemb... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6865contigH-paniculata_contig6865:6595..12038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue5.3e-39
Seed eggNOG ortholog2880.D7FJ29
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2QQV5@2759,COG0663@1
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-07_004610.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1171
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.4901614-UTR-H-paniculata_contig6865:6594..66451622930821.4901614-UTR-H-paniculata_contig6865:6594..6645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6865 6595..6645 +
1691481467.8521314-UTR-H-paniculata_contig6865:6594..66451691481467.8521314-UTR-H-paniculata_contig6865:6594..6645Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6865 6595..6645 +
1622930821.588154-UTR-H-paniculata_contig6865:11599..120381622930821.588154-UTR-H-paniculata_contig6865:11599..12038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6865 11600..12038 +
1691481467.9151812-UTR-H-paniculata_contig6865:11599..120381691481467.9151812-UTR-H-paniculata_contig6865:11599..12038Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6865 11600..12038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.5119295-CDS-H-paniculata_contig6865:6645..67391622930821.5119295-CDS-H-paniculata_contig6865:6645..6739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 6646..6739 +
1691481467.8680341-CDS-H-paniculata_contig6865:6645..67391691481467.8680341-CDS-H-paniculata_contig6865:6645..6739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 6646..6739 +
1622930821.53199-CDS-H-paniculata_contig6865:8022..81661622930821.53199-CDS-H-paniculata_contig6865:8022..8166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 8023..8166 +
1691481467.8770053-CDS-H-paniculata_contig6865:8022..81661691481467.8770053-CDS-H-paniculata_contig6865:8022..8166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 8023..8166 +
1622930821.5463831-CDS-H-paniculata_contig6865:9394..95601622930821.5463831-CDS-H-paniculata_contig6865:9394..9560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 9395..9560 +
1691481467.8857224-CDS-H-paniculata_contig6865:9394..95601691481467.8857224-CDS-H-paniculata_contig6865:9394..9560Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 9395..9560 +
1622930821.5615053-CDS-H-paniculata_contig6865:9867..100021622930821.5615053-CDS-H-paniculata_contig6865:9867..10002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 9868..10002 +
1691481467.8944712-CDS-H-paniculata_contig6865:9867..100021691481467.8944712-CDS-H-paniculata_contig6865:9867..10002Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 9868..10002 +
1622930821.5740657-CDS-H-paniculata_contig6865:11457..115991622930821.5740657-CDS-H-paniculata_contig6865:11457..11599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 11458..11599 +
1691481467.9035459-CDS-H-paniculata_contig6865:11457..115991691481467.9035459-CDS-H-paniculata_contig6865:11457..11599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6865 11458..11599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6865.14784.1prot_H-paniculata_contig6865.14784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6865 6646..11599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6865.14784.1

>prot_H-paniculata_contig6865.14784.1 ID=prot_H-paniculata_contig6865.14784.1|Name=mRNA_H-paniculata_contig6865.14784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MRVMMQLGGRALRAGGVAAPSVSRRVLSTSEYLKHRPFMNLSDIRGEVYP
NAYIAPSAAVVGDVLVRDHSCVWYGAVVRGDFNAVRLGAHVCVGDKSVIT
TVDLVHTGFAASTDIGSWVIIEPGASLTSCMIGDRCHIGAGAIVAEGSVV
EAGAQLAAGTVVPAGRLVPREELWAGNPAKFVRKLEPEEMKKVEQEAVKR
SEMGKEHADEFNPYGQAYLQAEAMIA*
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mRNA from alignment at H-paniculata_contig6865:6595..12038+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6865.14784.1 ID=mRNA_H-paniculata_contig6865.14784.1|Name=mRNA_H-paniculata_contig6865.14784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5444bp|location=Sequence derived from alignment at H-paniculata_contig6865:6595..12038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGCTTGTTCTTCCTCAACGGAAAGAAGGAGGAAGAGCGGAGTGCTGT
GATGAGGGTGATGATGCAGCTCGGGGGTCGGGCGTTGCGGGCTGGAGGGG
TGGCAGCGCCTTCCGTATCCCGACGGGTGCTCTCGACATCAGAATGTCAG
TACTCTTGTCTACTGTCATGTGACTGAGAAAGACTACGTGCCTGCCTCTT
CCGTGTTCATGCCCGTACTTCATAGACGATATAGACAAATAGTGTTCAAT
TTGTTCTCTCCTGCGTGCACTCCATCGTCTTGTGCGCTCTTGTTCTGGTG
CAACCGATGAGAGTCAGTCATAACGCGGGTTCGTTCGATTTCCTCTTGTA
CTCCCAGACCGGTCCAAGTAGCAAGCGTGTTGTCCGCTTGGGATGTTTGT
GGGATGTATCGCACGGCGTGCATTTAAAAGTGCGTTCTCAGGTGGTCACT
GTGCGGCCATTCTGGCTACGCTGTATTTCTGGCGAAAGGTCATGCAATCT
AGTCTTGCGTGTATAGCGATGATCAACGTTTGCCTCACGCAGCTCTCATG
CCCCCTCAGCATCCGTCCCTCCCATTTCACGCTACGATCAAGGCTCTGCA
ACCGCTTTGCCGACGCCGTTGCACTCACTATATTACTCCGCACAATAGAG
CAGTGCTGGGAAAATGTAACGGCTGTGGAAGAGAGGCGGTAAAAGGTGGA
TAGTTTTGAACTGACGAACACCTAGTATCGCGCATCACATGAACGCAAGT
CAGGACGATGTGTCTGTCGACCAGGGTAATAATGCACGTAATAATGCACA
CACCCACACAGCCTGCGTCCCTCAAGTAGACTCATCTAGGAACGAAGACC
TTTGTACATGGTCATAATCTGTTGCTCGCCTGGGCATGTGCAGTTGTTGC
GGATATCTCCCAAATGGCTATTCAGCACTGCGATCTGCAAGCTCTGTGAA
TATTAGCCCACACCTACTGGCAGTACTGGGTAACAAAGTTGCAGTCACAC
CCAAGTATTTACGTTAAAATATTGAGTGTCGATCCCAACAAGACTGCAGA
CAATAAATACCGCGAGATCATGTGCCTTGTATAGGGGTACAGTACTGCAC
ACAGCATCATGCAACACCCGCCTCTCGTGCACTACATTAGGTCCTGAAGT
TAGATTCCATCGGCGCCCCTCATTTTATTGTTGGGAGTAACATTTATTAC
TATCCACGAACCTTAGCCCGCAATCGCTTCCCACCTCCTATGTAACAATA
TTCTTTTGTTGACGATGACTGCTGTCTTCAAGGCCCGCACACCTACTCTG
CGTGCGGTAGGTCGAGCACTGCACCTGCCGTAGCACATAAGCTAAGGTGG
GATAGTTCGTGACTGATCTCTGTGTCGTTCCTGTGTACCCACGGCCCATG
GTGCGTTTCGTCTGTGTTCTTTTCTCAGACCTGAAGCACCGACCATTCAT
GAACCTCAGCGATATCCGTGGGGAAGTGTACCCCAACGCATACATTGCGC
CTTCGGCAGCCGTTGTCGGTGACGTGCTAGTTAGGGACCACTCATGTGTG
TGGTACGGTGCCGTCGTCCGAGGTACGTTGAAGCGTTGCTGTGGAGACGA
TGGATTTCTGGTACATGGGATCCGTTTGGCCTTTGACCCGGGCTTGCAGC
CCTGTTCTTTTGCAGGGTAATAATGGTATTGTGATGACAGAGTTTTGGCC
CTTTCCCCGTTAATTACCTCTAGACTGACGATTTACGGTAATCGTGCATT
GTAGCCCTCCACCTCATCAACAAGGCGTCGCAATTCGATTTTCAAGTCAG
GTAACAGCAATCCGACTTCTCTCGTGGGAGTTCGTGGTCATGAACGATTG
TTCTTGTGTGGTCCTCAATCATGCTCCACAATCAGTCGCAGTAAACAATT
ATCGTCTGTATCAGCTTTGTCGAACTGTTTATTCATGTATATCCGAATAT
ATTCTGCCATTCGTATCCAACCCAATGTAAGTGTTGTATCTTGGTAGGAA
ACGGAAATTCCGCCCACGGTCGATCTGAGATTTTTGGTGTCGTTTCGGTA
TTTGATCTGTCGCCCCAAATTTTCCACCCCAGAGTGTGCAACCTCTATAT
ACACCACTCGGAAGCGTTGTGGGGGGAAGAGGTTAAGCCCACGACCCGGT
ATTATTTACAATATACGCTAATCACCATTTTTTTAACTTCATTATAAATA
TAGAAATGGATACTAAGAAATTTATAATGAATGAAGAATTATTTTATTAA
CAAATAGTAATAATCTTATTTAATGTATTCTGGCTATTGTTATCGATATA
GTTACTCAACGTATGAGAGAAGGAAACTAATGGTTACAAAAAATGAATAT
TAGCAAAATCTAATAATAATAGAAATATGAACTCAAAACTTACTTTAGAA
AAAAACGAGAAAGATTATACCTCTCGTCGCCCCAAACTGCTCTAGGCCCG
AGCGACAGATCAAATACCGAATGATGACTGTCGTGTTCATACATAATCAA
TAGTGTTGATGATTGTCCCTTTAAAAGCGGAGAAGATATAAGGATATGCG
CCCTTGAGTATTCCTGAGTAAATGCACACCATGTCAGAATGTTCAAAGAC
CACGAGGTTTCCGGCACACGATGCACGTTTTGGGTGCCGATATGCAAAAA
TCGTTTCCTCCTGGACTTGACATTGACGACGGTCCCGAAGAAGGGTGTGC
ATGGTGTCGTGCCGGGTAAGCTGCGAGTCCGAGATGGAACCACAGCTTTC
TGAAAATCTTGCGGTTCGTTTGTATCCCCCCCGCCCTCCCCCTACGCCAG
GCGATTTCAATGCTGTTCGACTTGGCGCTCACGTCTGCGTTGGAGACAAG
TCCGTCATCACCACGGTCGACCTCGTGCACACCGGTTTTGCGGCGTCCAC
AGATATCGGGTCGTGGGTCATCATCGAGCCCGGGGCTTCTCTTACGTCGT
GCATGATCGGCGACAGGTGATCACATTTCACGTATCTCGTTTATCCATAA
AACGTAAACCTTCGTCTTGCCGTGGCGAGTGTGTGTGTCCCCTCATTCCC
TCCGTACTTGATTTATCGTGCGTGTTCTGGGTATGGTGTAACGTTCTCTC
GCCTGCCTCGCGTTTTCTTTTGATTCAAGCACCCCGGACTTTGTCCGGCG
ACCTCGAGCCTGTATGTAGCTTTAAATTTCATGTACATCGAATTTCTCTG
TTCCTACACCTTGTGTTCATCTTCCTGAAATGCTTTTATGCTGTACTATG
CTGTTATGCTATGATTCTTCCAGGTGCCACATCGGAGCAGGTGCAATAGT
GGCCGAGGGCTCCGTGGTAGAGGCAGGGGCACAACTGGCCGCGGGGACGG
TCGTACCGGCCGGCCGGCTGGTACCAAGGGAGGAACTATGGGCAGGCAAC
CCCGCAAAGTGAGTAATATGTAGATAATCTTATCTCTGATTTTGGTGCCT
GTGGTCGAGGAGCTGCCAGCTGTTCGCAACCCCCACGGCACTGCCGCAGA
CTGGAGGGGCGCGGTGATGCAGTGTGAATAGTTAACATTAGTCTAGGTTC
TGGCGGTTTGGGCACTGCTTCCTGCAAGCACGGTTCCATGACAAATGAAT
GTAGCATACCTCGAGCATCCCTCCCCCACATGGGATCAACGTACTGTAAA
CTGCATGGTGGAACAACAGTCTATACAGCGGTTGTTGCCCACAAGCCCCC
CACAGAGGATAACACTTGAGCTGATGTGGAAAGCGCTCTCAACAGCATTA
CGCACACCCCTGCGGCGCTCGCAGCTTCATGAGAAAGTTTTCTTGAGTGG
CCGGTTGAGCGTGTGCATTCTGCATGCCCGGCGTATCGTTGCGTCTGTTG
CAATTCTCCTAAACTGAGGCAATGTCAGCAGTGTGACGCTAGTGCGATTC
CGTCGTCAGTCCAATACTCTCCCCCCAATGTTGCAGAGGTCGTCATAGTA
CTTCCAGGATACTACAATAGTACCGAAGCGCGTACGCAGCCCCAGCTCGG
GCCTCATGAAAATACTGCATAATGGCATGTGTCAATAATATCTCCAATAC
ATGCTCGTAAATATATTGCCTGCATCTAGTATGACCCACAAAGGTATCGA
AAATGCTAAGTATGTCTCGAGTATTTCCTGGCAAACGCTGGATATACCAC
CGTGTATCCTCTATAATACTGCGTATTTACCACAGGAAATACTGCGGAAG
CTCTGTCGGTAATCGGTAGTCATAATTCAATCAATATAATTCGAGGGCAT
TAATACCGGGTACTGTCATTGTTTCCTCCGCATCCAATACCAGAGTATGG
ACTCAGTACGACTATGGGTCCACAACAAAATACTGATTATCATCAGCATG
TTCCCTCTAAAATACCGAGCGTACGTCCGGTTCTTGCTGGTGAAATACTA
CGATGGCTTAGTACCGCAAGTATGAACTCCGAAAATACTGGGTACATTTT
CAGCATCTCTAGTACAAACCTCCGAAATACGCAGTGCATCTCGAGCACTT
GGCGATATACTGAGATGACTTAGCGTTGCTCATATGAACTGCGAAAGTAC
GGAGTACATGTCCAGTATCACTAAATCAAATACCGAAAATATTGGGTATC
TCCTAGTGCTGTAGTACGGATTTCAAGAAGTACTGAGTCCATTTTCAGTA
TCACCAGTTTCCTTCCCTAAGAATCCTTATACAGTACTGTGATGACCAAA
TGCAGTGTGGCAGGATCTACTCAGTCCAGCCTGATACATTGCTTGGAAAT
TCGCTTGCAATGTGGCAGACAGGGAGTGTTTCTATTTTTGACGAACCAAC
CTGTCTCTCGTGTCTCACTTGTCCCCGGTCTGGTACTTGTGGAAAACCAC
ACCACGGAAACAGGTTTGTACGCAAGCTCGAACCCGAAGAAATGAAGAAG
GTAGAGCAAGAGGCCGTGAAGAGAAGCGAAATGGGAAAGGAACACGCGGA
CGAGTTCAACCCTTACGGTCAGGCTTATCTCCAGGCGGAGGCGATGATCG
CGTAATCTTGGGCGCTAGATTGGGGGTAATGCTGTTGAGGACCGCACCGT
GAAGTCTGGTGTCCATCATAGTTGTAGTGGACGACCTAAAGGGGGAGAAG
GAGGGAGTTGGGGTCGGGTAGAGCATGGGACTAGCCCAACTGCTGTCGAG
GCGCCGGCCAACGACAACGCTCATTTGTGTGACTCCTTGCAGCCCATAAA
GGCAGTGTCCAGATATTTTTCCTAAAAAATCATGTGCAACTTATCGGTAC
AGTTTGATTGGGGCAGGCATGGATGATGGGTGGTTGCTGCCTCTCCTGCT
CTTCAGTATTTTCGGCACTTGGCAGCGGCGTCCCGCAGGATCGCGAATGT
TTTTTACCCCGGATAGCAATGAAAAGGAAAGGAAAATGCTGACGTTCTAT
TTGCTCAATGAATTGGTAACGCCCCCCCCCCCCCCCCCCCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6865:6595..12038+

>mRNA_H-paniculata_contig6865.14784.1 ID=mRNA_H-paniculata_contig6865.14784.1|Name=mRNA_H-paniculata_contig6865.14784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig6865:6595..12038+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGTGATGATGCAGCTCGGGGGTCGGGCGTTGCGGGCTGGAGGGGT
GGCAGCGCCTTCCGTATCCCGACGGGTGCTCTCGACATCAGAATATGAGG
GTGATGATGCAGCTCGGGGGTCGGGCGTTGCGGGCTGGAGGGGTGGCAGC
GCCTTCCGTATCCCGACGGGTGCTCTCGACATCAGAATACCTGAAGCACC
GACCATTCATGAACCTCAGCGATATCCGTGGGGAAGTGTACCCCAACGCA
TACATTGCGCCTTCGGCAGCCGTTGTCGGTGACGTGCTAGTTAGGGACCA
CTCATGTGTGTGGTACGGTGCCGTCGTCCGAGACCTGAAGCACCGACCAT
TCATGAACCTCAGCGATATCCGTGGGGAAGTGTACCCCAACGCATACATT
GCGCCTTCGGCAGCCGTTGTCGGTGACGTGCTAGTTAGGGACCACTCATG
TGTGTGGTACGGTGCCGTCGTCCGAGGCGATTTCAATGCTGTTCGACTTG
GCGCTCACGTCTGCGTTGGAGACAAGTCCGTCATCACCACGGTCGACCTC
GTGCACACCGGTTTTGCGGCGTCCACAGATATCGGGTCGTGGGTCATCAT
CGAGCCCGGGGCTTCTCTTACGTCGTGCATGATCGGCGACAGGCGATTTC
AATGCTGTTCGACTTGGCGCTCACGTCTGCGTTGGAGACAAGTCCGTCAT
CACCACGGTCGACCTCGTGCACACCGGTTTTGCGGCGTCCACAGATATCG
GGTCGTGGGTCATCATCGAGCCCGGGGCTTCTCTTACGTCGTGCATGATC
GGCGACAGGTGCCACATCGGAGCAGGTGCAATAGTGGCCGAGGGCTCCGT
GGTAGAGGCAGGGGCACAACTGGCCGCGGGGACGGTCGTACCGGCCGGCC
GGCTGGTACCAAGGGAGGAACTATGGGCAGGCAACCCCGCAAAGTGCCAC
ATCGGAGCAGGTGCAATAGTGGCCGAGGGCTCCGTGGTAGAGGCAGGGGC
ACAACTGGCCGCGGGGACGGTCGTACCGGCCGGCCGGCTGGTACCAAGGG
AGGAACTATGGGCAGGCAACCCCGCAAAGTTTGTACGCAAGCTCGAACCC
GAAGAAATGAAGAAGGTAGAGCAAGAGGCCGTGAAGAGAAGCGAAATGGG
AAAGGAACACGCGGACGAGTTCAACCCTTACGGTCAGGCTTATCTCCAGG
CGGAGGCGATGATCGCGTAAGTTTGTACGCAAGCTCGAACCCGAAGAAAT
GAAGAAGGTAGAGCAAGAGGCCGTGAAGAGAAGCGAAATGGGAAAGGAAC
ACGCGGACGAGTTCAACCCTTACGGTCAGGCTTATCTCCAGGCGGAGGCG
ATGATCGCGTAA
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