mRNA_H-paniculata_contig12339.1477.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12339.1477.1
Unique NamemRNA_H-paniculata_contig12339.1477.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12339.1477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12339contigH-paniculata_contig12339:2816..4447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928955.4147415-CDS-H-paniculata_contig12339:2815..28751622928955.4147415-CDS-H-paniculata_contig12339:2815..2875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 2816..2875 +
1691480680.700707-CDS-H-paniculata_contig12339:2815..28751691480680.700707-CDS-H-paniculata_contig12339:2815..2875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 2816..2875 +
1622928955.4326317-CDS-H-paniculata_contig12339:4075..44471622928955.4326317-CDS-H-paniculata_contig12339:4075..4447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 4076..4447 +
1691480680.7111108-CDS-H-paniculata_contig12339:4075..44471691480680.7111108-CDS-H-paniculata_contig12339:4075..4447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 4076..4447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12339.1477.1prot_H-paniculata_contig12339.1477.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12339 2816..4447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12339.1477.1

>prot_H-paniculata_contig12339.1477.1 ID=prot_H-paniculata_contig12339.1477.1|Name=mRNA_H-paniculata_contig12339.1477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
SSSGRSSRIAGAPAATAENDIWPKVCLLNNCMLKKPKFFHNNDELDKHLQ
RCLNDKMKKVDGSPTAASAGGGGGKPSRQSTRKTSVPLRVCMDHETTPTL
SNRRSAKKAPIVRASSAAAAANTNGGSRVKSTAVANTRGGGAMS
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mRNA from alignment at H-paniculata_contig12339:2816..4447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12339.1477.1 ID=mRNA_H-paniculata_contig12339.1477.1|Name=mRNA_H-paniculata_contig12339.1477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig12339:2816..4447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGCAGTGGGAGAAGCTCGCGAATCGCTGGTGCCCCCGCCGCAACCGC
TGAGAACGATGTAAGTAATACTACTGCACATGTTTGGTGACTGGCTGCAT
GAGCACAGTGGGGCTTGCTGACTGACAGTGGGAAAGATTTTTAGCCTCAT
TCCGCCGACAGAAATCCATGGTCGGTGCAGCATTTGACTTCGTTGTACGG
TAATGAGACTGGCTTTCAGAAACACCCCCCTCCCCCCCGCCGGCATTCGC
CGATCTTCTTTTTTGATCCTTGCGGTGCGGTGCTTTTTTTGGAGCGATTT
TTTTATTTGAAAAAGGATTCCGATTTGACGCCATGAAAGGTTGAATTGTC
TGTTGCAGTTGTGTTTACGGTAGGGAGGTGTTGGCAGGCAACCGGGGCTT
GTACCAAAAATTAACGTGCGATTTTCTTTTGTTAAGTCTTGACCGAGCTG
GGGAAAAAACGTTGTAATATTGCCCGCCCCCGCGTTGATGGATCAGGGAT
GTTGGGGCAATAGGGCAGTGGGTGTGTGTATCGTCGCGGTTCCTGTTGAC
TTGACTACGGTCGTCATGGCTGCCGTGGGGTGTGTGCGGGTTTTTGGCTG
AAGAGAGTGTGGTACTCGGTAGATGTGCGATTCTCGTCAATTTATTCTGA
AGGCGCTTTGTTCGAAATCTGTATGCTTCAATGAGCCGCATGAATCAATC
GCTTGTCTAATTATTTTTTCATGGACGAACGGGCGTCCGCAAATGCCTAT
CCTCGTCAGTGACTCCGGCGTTCACGATGTACTGTAGTGTTGCTGTGCAC
TTGATGCTGTTTTTTTACCCGTCGGGATGGGCGTGGTTCCTTGAGCCTGG
AACCGTTTGTTGCTTCCTTATGGCCGTTGTTACATTCAACATGACACCAT
GGGGGTGTTGTGATATATTTGATGTCGATTATCTCGTATTGTATCGATAA
AAGTTATCACGAAAAATACTAGTGTTCTTCACCGACGCTAGGACACGCCA
TACAAAATCTGCTTGTTGTTGATGTCTATTACTCTCTGTATGCACTTGCT
TGACGGAGCGTCAGTTGAGCACAGCACGACGACGCCATTGTGTAAAGGAG
TCGCGTGTATCTACATGCTGCAAAAGCTGTACAATTCCATCAAAAACCAC
CGTCAAACAAACTTTCGTGTCTTGTGTGTCTTTTTCCAATCACGACATAC
CGCGCACTCTTGGTCATGATGCTCTTTTGTACCACCGACTCGCCCGCCAT
GGAATCACAGATTTGGCCGAAAGTGTGCCTCCTTAATAACTGCATGCTCA
AGAAACCCAAGTTCTTCCACAATAACGACGAGCTCGACAAACACCTCCAG
AGGTGCTTGAACGACAAAATGAAAAAAGTCGACGGATCTCCGACGGCCGC
GTCGGCGGGAGGAGGAGGGGGAAAACCGTCGCGGCAAAGCACGCGTAAAA
CCTCGGTCCCTCTAAGGGTGTGCATGGATCATGAGACCACGCCGACACTC
TCCAATCGCCGTTCTGCTAAGAAGGCGCCGATCGTTCGGGCCTCGTCTGC
CGCCGCCGCCGCCAACACCAACGGCGGATCCAGAGTCAAATCAACGGCCG
TAGCGAACACTCGTGGCGGCGGCGCGATGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig12339:2816..4447+

>mRNA_H-paniculata_contig12339.1477.1 ID=mRNA_H-paniculata_contig12339.1477.1|Name=mRNA_H-paniculata_contig12339.1477.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig12339:2816..4447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAGCAGTGGGAGAAGCTCGCGAATCGCTGGTGCCCCCGCCGCAACCGC
TGAGAACGATTCGAGCAGTGGGAGAAGCTCGCGAATCGCTGGTGCCCCCG
CCGCAACCGCTGAGAACGATATTTGGCCGAAAGTGTGCCTCCTTAATAAC
TGCATGCTCAAGAAACCCAAGTTCTTCCACAATAACGACGAGCTCGACAA
ACACCTCCAGAGGTGCTTGAACGACAAAATGAAAAAAGTCGACGGATCTC
CGACGGCCGCGTCGGCGGGAGGAGGAGGGGGAAAACCGTCGCGGCAAAGC
ACGCGTAAAACCTCGGTCCCTCTAAGGGTGTGCATGGATCATGAGACCAC
GCCGACACTCTCCAATCGCCGTTCTGCTAAGAAGGCGCCGATCGTTCGGG
CCTCGTCTGCCGCCGCCGCCGCCAACACCAACGGCGGATCCAGAGTCAAA
TCAACGGCCGTAGCGAACACTCGTGGCGGCGGCGCGATGAGCATTTGGCC
GAAAGTGTGCCTCCTTAATAACTGCATGCTCAAGAAACCCAAGTTCTTCC
ACAATAACGACGAGCTCGACAAACACCTCCAGAGGTGCTTGAACGACAAA
ATGAAAAAAGTCGACGGATCTCCGACGGCCGCGTCGGCGGGAGGAGGAGG
GGGAAAACCGTCGCGGCAAAGCACGCGTAAAACCTCGGTCCCTCTAAGGG
TGTGCATGGATCATGAGACCACGCCGACACTCTCCAATCGCCGTTCTGCT
AAGAAGGCGCCGATCGTTCGGGCCTCGTCTGCCGCCGCCGCCGCCAACAC
CAACGGCGGATCCAGAGTCAAATCAACGGCCGTAGCGAACACTCGTGGCG
GCGGCGCGATGAGC
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