mRNA_H-paniculata_contig12320.1467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12320.1467.1
Unique NamemRNA_H-paniculata_contig12320.1467.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Match: D7FKR2_ECTSI (Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR2_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 7.660e-38
Identity = 71/98 (72.45%), Postives = 83/98 (84.69%), Query Frame = 3 
Query:    3 VEISPELIRKTAGLAQIQIADGEVDDLLPRTEEFIGFVEAMEEVDGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRVPKVGEDEG 296
            V+I+P+L+RKTA LAQIQ++D EVD L PR EEF+GFVE M+EV    DGAFA L CGSDFLREDS ++F+NVAA+MENMP EE NYLRVPKVGEDEG
Sbjct:   66 VDITPDLVRKTAMLAQIQVSDEEVDVLAPRMEEFLGFVETMKEVAEASDGAFATLNCGSDFLREDSADRFSNVAAIMENMPIEEGNYLRVPKVGEDEG 163
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BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Match: A0A6H5KRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.930e-26
Identity = 54/67 (80.60%), Postives = 57/67 (85.07%), Query Frame = 3 
Query:   96 EEFIGFVEAMEEVDGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRVPKVGEDEG 296
            EEF+GFVE MEEV    DGAFA L CGSDFLREDS E+F+NVAAVMENMP EE NYLRVPKVGEDEG
Sbjct:    2 EEFLGFVETMEEVAEASDGAFATLNCGSDFLREDSAERFSNVAAVMENMPIEEGNYLRVPKVGEDEG 68
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BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Match: W7TR28_9STRA (Glutamyl-trna amidotransferase subunit c n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR28_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.840e-11
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 3 
Query:    6 EISPELIRKTAGLAQIQIADGEVDDLLPRTEEFIGFVEAMEEV-DGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRVPKVGEDE 293
            E++PELI+ TA LAQ+   + E+ +++PR + F+ FV+ M++V D     A   +    + LR DS   F N  A+  NM  +E  +LRVPKVGE++
Sbjct:   50 EVTPELIKHTATLAQLHFDEDEIQNMIPRFQAFLSFVDRMQDVPDSAAVSAPDSMPTVQEVLRPDSPSIFPNQDAIFTNMAEQEDAFLRVPKVGEED 146
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BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Match: A0A7S2ZNI6_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNI6_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-7
Identity = 35/93 (37.63%), Postives = 53/93 (56.99%), Query Frame = 3 
Query:    3 VEISPELIRKTAGLAQIQIADGEVDDLLPRTEEFIGFVEAMEEVDGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRVPKV 281
            VEI+ EL+ KTA LA +Q+++ EVD + P  ++ IGFVE +  VD  G      +    + LRED    F     ++E  P  E +++RVPK+
Sbjct:   31 VEITRELVEKTAKLASLQLSNEEVDRITPELQKIIGFVEQINAVDVSGVEPTLRVEDLWNVLREDKPTIFPAQDEMLEEAPLLESDFIRVPKI 123
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BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Match: A0A6T6MT11_9RHOD (Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6MT11_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 1.570e-6
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:    3 VEISPELIRKTAGLAQIQIADGEVDDLLPRTEEFIGFVEAMEEVDGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRVPKV 281
            VEI+ +++ KTA LA +Q++D EV  + P  +  +GFVE +  VD  G      +    + LRED    F     ++E  P  E +Y+RVPK+
Sbjct:   31 VEITRDVVEKTAKLASLQLSDEEVGRITPELQNIVGFVEQINAVDVSGVEPTLRVEDLWNVLREDQPAIFPAQDEMLEEAPQLESDYVRVPKI 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12320.1467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKR2_ECTSI7.660e-3872.45Glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amido... [more]
A0A6H5KRS3_9PHAE4.930e-2680.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TR28_9STRA1.840e-1139.18Glutamyl-trna amidotransferase subunit c n=2 Tax=N... [more]
A0A7S2ZNI6_9RHOD1.790e-737.63Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
A0A6T6MT11_9RHOD1.570e-635.48Glutamyl-tRNA(Gln) amidotransferase subunit C, mit... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12320contigH-paniculata_contig12320:4304..6205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionglutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
Ec32 orthologEc-21_001810.1
Exons2
Model size1292
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12320.1467.1prot_H-paniculata_contig12320.1467.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12320 5297..5473 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.7500846-UTR-H-paniculata_contig12320:4303..52961622928953.7500846-UTR-H-paniculata_contig12320:4303..5296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 4304..5296 -
1691480680.105947-UTR-H-paniculata_contig12320:4303..52961691480680.105947-UTR-H-paniculata_contig12320:4303..5296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 4304..5296 -
1622928953.8416984-UTR-H-paniculata_contig12320:5473..55241622928953.8416984-UTR-H-paniculata_contig12320:5473..5524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 5474..5524 -
1691480680.126151-UTR-H-paniculata_contig12320:5473..55241691480680.126151-UTR-H-paniculata_contig12320:5473..5524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 5474..5524 -
1622928953.8587775-UTR-H-paniculata_contig12320:6134..62051622928953.8587775-UTR-H-paniculata_contig12320:6134..6205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 6135..6205 -
1691480680.1341114-UTR-H-paniculata_contig12320:6134..62051691480680.1341114-UTR-H-paniculata_contig12320:6134..6205Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12320 6135..6205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.8273194-CDS-H-paniculata_contig12320:5296..54731622928953.8273194-CDS-H-paniculata_contig12320:5296..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12320 5297..5473 -
1691480680.115926-CDS-H-paniculata_contig12320:5296..54731691480680.115926-CDS-H-paniculata_contig12320:5296..5473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12320 5297..5473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12320.1467.1

>prot_H-paniculata_contig12320.1467.1 ID=prot_H-paniculata_contig12320.1467.1|Name=mRNA_H-paniculata_contig12320.1467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MEEVDGVGDGAFAMLACGSDFLREDSEEKFANVAAVMENMPAEERNYLRV
PKVGEDEG*
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mRNA from alignment at H-paniculata_contig12320:4304..6205-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12320.1467.1 ID=mRNA_H-paniculata_contig12320.1467.1|Name=mRNA_H-paniculata_contig12320.1467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1902bp|location=Sequence derived from alignment at H-paniculata_contig12320:4304..6205- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGGAGATATCGCCGGAGCTTATAAGGAAAACAGCAGGACTGGCACAA
ATTCAGATCGCGGATGGGGAGGTTAGTGACACGGTGCAATCGAGTTGCGA
GATTAAGCACCCACTGGTCTTTCCTTACGACCCTCCACTTGAACTCACAT
TTTTAACCCCCCAAAACGGGGATGGGGCAGGACTAGCACCATCATGATTT
TTTTAGACGTGCAGGTGACTACTAGAACAACCCACTCTGAGTTCATTCTG
TAGTACACATTTCGCGACTGCCGAACTACAGCAGGTACACCAAGTTTGGG
GATTTAACCGTCGATGTGATAATCCAATAATTGAGTATGCGACGCATGTG
TTTATGTGTATAGAACTTCCTTGAAACAGCCAACCGAGCTAAGCCTTAAA
AGCATGGGATGGTGTGTTGCATAACTAAGAGATATGTGCGCGCTTGTCTC
GCTCCATGTTGAAAGACTTTCAATGAACTTGTAAATCCTAGACGTCAATG
AAGTCGAAGGCTAATTGTGTTTGACAAAGGTGTTGCGTTAGGTGAGACTT
TCCTTGCCGGCTGTTGGATGTGCACTTCAAATGTGACACACGGTGTTGCT
TGATGATTGTTCATTACTCGTCTGACCACATTAATATAACAGAATGGGCT
GAGATAAGCGCGTGCCACTACCCCGATATAGGTTGACGATCTCTTGCCAC
GCACGGAGGAGTTCATTGGTTTTGTGGAGGCTATGGAGGAGGTGGACGGA
GTAGGCGATGGTGCGTTTGCAATGCTAGCGTGCGGCAGTGATTTTCTGAG
AGAAGACAGTGAGGAAAAGTTCGCAAATGTCGCAGCTGTGATGGAGAATA
TGCCTGCTGAAGAAAGGAATTATTTGCGTGTACCGAAAGTTGGAGAGGAC
GAAGGATGACTGCGGGCTTTACCGTGTACTGCTTTTAACGGTGTACTGCT
TTTACGCTTCCTGAGTAGATCCTCTTTCAATTTTCCACCAGTGTTCCCAT
AATTTATATTTTCGCGGAAGTGAAAACCAGGTGTTGGTTTATGTGAATGA
TTTTGGAGTTGTAGCGATTTAGTTTAGTGGTCTGCGGCGTGGAACAGCGA
GGTCGGGTCGGTGATAGGAAAGAGTGTCGTAGGGCCGTATTAAACGATGA
GCCTGGTTTTCCTTTTTCCGTTTTTGCTCAAGAGTTCGTACACCGTATTC
AGTTCATTCGGAATGTCAACTGCTTTATTCGCATGAAATGGTTGCGGTAT
TTGAACCCTCAAACAATGACCGGAAAACGGAAAAGCAGGCACGCTCCTTT
AGTTGGTAGGGTTGGCCCTTGGAAATAGCCCTAGACAGTGATCTTGGCCA
CCGTTCGCTCATTTTTCGGTGCCAAGTGTGGCTTGTCAGCAGCATAGTTT
CAATCGACTCATATCTACGGTGCTCCTTACCTTTAGTGCTGTAGCTGGAC
CTAGCCTCTGCCACACATGTTTTTTTCTGAAGGACTTGCCCTGATCTCAA
GTGCTTTTCTGCGTCGGTACATGCAGTCGTGTACGTGTAACCTAGTGTGA
GCTACAGCAATGAAAATGAGCCATGTGCAGTTGTCAGTTGTGCCGTGCAG
TAGAAAAGAACGACAAGGCACCTGCTACGACGTTCGGGAAGATGGGACGA
TTCGTAATTTTGGGAGCATTTAGCTGCACTTGTGATGTAGTTCATCATAG
TACCGCTAGAAAATAGTGTTCATCTACGTTCTACATTGACGTAACTATGG
CCGCCCTAATAAACACGCTGCCTTATTCGTCGTCGTTCGAAATCATTTTC
ACGCACCCATGCGAAACTGCACAGATCAACAGCCATAGCCACGCTCTTAC
AGTGTTTTGTCATCCCGACCGTCTACTTCTGTATATGTGTATATATATGT
GT
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Coding sequence (CDS) from alignment at H-paniculata_contig12320:4304..6205-

>mRNA_H-paniculata_contig12320.1467.1 ID=mRNA_H-paniculata_contig12320.1467.1|Name=mRNA_H-paniculata_contig12320.1467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig12320:4304..6205- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGTGGACGGAGTAGGCGATGGTGCGTTTGCAATGCTAGCGTG
CGGCAGTGATTTTCTGAGAGAAGACAGTGAGGAAAAGTTCGCAAATGTCG
CAGCTGTGATGGAGAATATGCCTGCTGAAGAAAGGAATTATTTGCGTGTA
CCGAAAGTTGGAGAGGACGAAGGATGAATGGAGGAGGTGGACGGAGTAGG
CGATGGTGCGTTTGCAATGCTAGCGTGCGGCAGTGATTTTCTGAGAGAAG
ACAGTGAGGAAAAGTTCGCAAATGTCGCAGCTGTGATGGAGAATATGCCT
GCTGAAGAAAGGAATTATTTGCGTGTACCGAAAGTTGGAGAGGACGAAGG
ATGA
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