mRNA_H-paniculata_contig12310.1463.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12310.1463.1
Unique NamemRNA_H-paniculata_contig12310.1463.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12310.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12310contigH-paniculata_contig12310:5541..6645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size273
Cds size270
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12310.1463.1prot_H-paniculata_contig12310.1463.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12310 5541..6643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.2956958-CDS-H-paniculata_contig12310:5540..55701622928953.2956958-CDS-H-paniculata_contig12310:5540..5570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 5541..5570 +
1691480679.9362876-CDS-H-paniculata_contig12310:5540..55701691480679.9362876-CDS-H-paniculata_contig12310:5540..5570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 5541..5570 +
1622928953.3104858-CDS-H-paniculata_contig12310:6109..62191622928953.3104858-CDS-H-paniculata_contig12310:6109..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 6110..6219 +
1691480679.9507997-CDS-H-paniculata_contig12310:6109..62191691480679.9507997-CDS-H-paniculata_contig12310:6109..6219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 6110..6219 +
1622928953.3216786-CDS-H-paniculata_contig12310:6513..66431622928953.3216786-CDS-H-paniculata_contig12310:6513..6643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 6514..6643 +
1691480679.9610324-CDS-H-paniculata_contig12310:6513..66431691480679.9610324-CDS-H-paniculata_contig12310:6513..6643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 6514..6643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12310.1463.1

>prot_H-paniculata_contig12310.1463.1 ID=prot_H-paniculata_contig12310.1463.1|Name=mRNA_H-paniculata_contig12310.1463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
GAILSIGTIEFMKKATFKDNFALNGGNGGGFCNGGQVTFNLRAIFRNNTV
ESSYSDDGEPYNGHGPGLFNKGGSSTVLFKRLALFKDNIG
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mRNA from alignment at H-paniculata_contig12310:5541..6645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12310.1463.1 ID=mRNA_H-paniculata_contig12310.1463.1|Name=mRNA_H-paniculata_contig12310.1463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1105bp|location=Sequence derived from alignment at H-paniculata_contig12310:5541..6645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCTATCCTCAGCATTGGTACCATAGAGGTAAAACTCAAGACTTCAAC
CGCGACAGGGTCATTCATGTAGCTGGACAGTATCCATGGTTTGAAAGTTA
GAATGCAATTATAAGTTTACTGATGGACAGGATTCACCCCCGCGGTGGCG
CATTCAAAATAGATGTCGCTGACCCAACGGTTTGCCGCTTTAACAACAAT
TGTGGTTCCTGAACCAGTACAAGGCACAACTGAACAATTTTTCTGTGAGT
CCGTTCGAGAATGCCACCTCCCTTGATCACCACCCCTGTTGAGGAATGCG
ATTTTGCCTGTTGCCTTGCTGGTGAAGATAAGGAGACCTCTAATCTATCG
CCCAGTTGCTTGTTCTCGCCACAACCCTTCTCTTTCTACCTACGGATGAA
AGGCTTTGGCAACAGCAAATGCTCCTGACATGGTACCGTGTGTATGTACT
GTACAGCCCCTCTCCTCGTTTTCGTTTCGTTCCGTTTCGTCGCGTATTTC
GTGATCTTCCTCTTCGCCCCCGCCCCCCCCCCCTCGAAACACCGTTTCTT
TCCGATATTATCGTCGAAGTTCATGAAAAAGGCAACGTTCAAGGATAACT
TTGCTCTCAACGGGGGCAACGGGGGCGGCTTTTGCAATGGGGGCCAAGTC
ACGTTCAACCTCAGGGCCATTTTCCGCAAGTAAGATGCACTTCATATTCA
TACGAGGTAGTCTTTAACCCTGCGAGTGCCGGAGGCTACTTCAGAACGGA
AATGGCACCTAGCAACAAATTTCGAGCGCCGCAGATTATGGGCAATTCAA
TTATTGACACCGGTCTGTGCACTCTGCCCTCCATAATTTGCGTAGTTTGA
TGATATTAGCATTGTTTTGCACCACTTGCTCACCGTACCGCGTTTAGTTT
GACGATACCATCGCGATTTGTGGATGTTTTTCGTTTTCACTTGCGTATAT
TTGTTTTTTGTGCGACTGATCAGCAACACAGTGGAGTCGAGCTACAGTGA
TGACGGCGAGCCCTACAACGGGCACGGCCCCGGTCTATTCAACAAAGGTG
GATCATCCACCGTGTTGTTTAAGCGCCTGGCCTTGTTCAAGGACAACATT
GGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12310:5541..6645+

>mRNA_H-paniculata_contig12310.1463.1 ID=mRNA_H-paniculata_contig12310.1463.1|Name=mRNA_H-paniculata_contig12310.1463.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig12310:5541..6645+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGCTATCCTCAGCATTGGTACCATAGAGGGCGCTATCCTCAGCATTGG
TACCATAGAGTTCATGAAAAAGGCAACGTTCAAGGATAACTTTGCTCTCA
ACGGGGGCAACGGGGGCGGCTTTTGCAATGGGGGCCAAGTCACGTTCAAC
CTCAGGGCCATTTTCCGCAATTCATGAAAAAGGCAACGTTCAAGGATAAC
TTTGCTCTCAACGGGGGCAACGGGGGCGGCTTTTGCAATGGGGGCCAAGT
CACGTTCAACCTCAGGGCCATTTTCCGCAACAACACAGTGGAGTCGAGCT
ACAGTGATGACGGCGAGCCCTACAACGGGCACGGCCCCGGTCTATTCAAC
AAAGGTGGATCATCCACCGTGTTGTTTAAGCGCCTGGCCTTGTTCAAGGA
CAACATTGGGCAACACAGTGGAGTCGAGCTACAGTGATGACGGCGAGCCC
TACAACGGGCACGGCCCCGGTCTATTCAACAAAGGTGGATCATCCACCGT
GTTGTTTAAGCGCCTGGCCTTGTTCAAGGACAACATTGGG
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