mRNA_H-paniculata_contig12310.1462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12310.1462.1
Unique NamemRNA_H-paniculata_contig12310.1462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12310.1462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12310contigH-paniculata_contig12310:1777..2506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928953.252891-CDS-H-paniculata_contig12310:1776..19351622928953.252891-CDS-H-paniculata_contig12310:1776..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 1777..1935 +
1691480679.9016933-CDS-H-paniculata_contig12310:1776..19351691480679.9016933-CDS-H-paniculata_contig12310:1776..1935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 1777..1935 +
1622928953.2628114-CDS-H-paniculata_contig12310:2484..25051622928953.2628114-CDS-H-paniculata_contig12310:2484..2505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 2485..2505 +
1691480679.9224737-CDS-H-paniculata_contig12310:2484..25051691480679.9224737-CDS-H-paniculata_contig12310:2484..2505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12310 2485..2505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12310.1462.1prot_H-paniculata_contig12310.1462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12310 1777..2505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12310.1462.1

>prot_H-paniculata_contig12310.1462.1 ID=prot_H-paniculata_contig12310.1462.1|Name=mRNA_H-paniculata_contig12310.1462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
NSEVTVSGPVTMIGNEARYQGGAVSFGQSGTWGNRSKLVLPADADISGNT
AVMCPGIKVD
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mRNA from alignment at H-paniculata_contig12310:1777..2506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12310.1462.1 ID=mRNA_H-paniculata_contig12310.1462.1|Name=mRNA_H-paniculata_contig12310.1462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=730bp|location=Sequence derived from alignment at H-paniculata_contig12310:1777..2506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTCTGAAGTGACGGTGTCGGGACCCGTGACGATGATCGGCAACGAGGC
TCGCTATCAAGGCGGCGCAGTCTCCTTCGGGCAGTCGGGGACGTGGGGAA
ATCGGTCCAAGCTCGTACTTCCCGCTGATGCGGACATCTCGGGCAACACA
GCAGTCATGGTGAGTCAACTATGACCCCGATGGGAGCGCAATAGAAACGC
TCTCGAGAGGGGGATTGCCATAAACACCAGGCATGCAAATGCAGTTTCAC
TACCAATAGTACAGGGAACGCTTTCGAGATAACGTGAAAAACCACTAGGC
TGGATTCTGAATACAATCGTCTGTGCTAAATATTGTTTACATATTCCCTT
AACGTTTCTTACTTGAAATGTCTAACGTTTGTTCCAGACGACACCTGTAG
TACACAAATGTTGTGTCTATTCGTCAACCTCAATTTTGTCCCTAACGCAG
TTATCGCCCCCCCCTCCCCTCGTGTTCAATGGTCTATAAAAACTACAAGA
TGCGAAACATGAGTACGCGCTCCCCCCCGTGTTCACTTGATAAGCATACG
TGGGTGGATCTGGATAAGACGTAGGCGTGTTGGTAAAGGAGTAAGCACTT
GTTCATGCACAGCTCACCCAGCGTCACGTACTCCAAATTCTCACAATGGG
GGTACCTAGTCCCCAGGCTATAAATAAGGACGCGCCCCCATCCCCCCCTC
CCCTCAAGTGTCCTGGCATTAAAGTCGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig12310:1777..2506+

>mRNA_H-paniculata_contig12310.1462.1 ID=mRNA_H-paniculata_contig12310.1462.1|Name=mRNA_H-paniculata_contig12310.1462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig12310:1777..2506+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACTCTGAAGTGACGGTGTCGGGACCCGTGACGATGATCGGCAACGAGGC
TCGCTATCAAGGCGGCGCAGTCTCCTTCGGGCAGTCGGGGACGTGGGGAA
ATCGGTCCAAGCTCGTACTTCCCGCTGATGCGGACATCTCGGGCAACACA
GCAGTCATGAACTCTGAAGTGACGGTGTCGGGACCCGTGACGATGATCGG
CAACGAGGCTCGCTATCAAGGCGGCGCAGTCTCCTTCGGGCAGTCGGGGA
CGTGGGGAAATCGGTCCAAGCTCGTACTTCCCGCTGATGCGGACATCTCG
GGCAACACAGCAGTCATGTGTCCTGGCATTAAAGTCGACTGTCCTGGCAT
TAAAGTCGAC
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