mRNA_H-paniculata_contig6686.14574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6686.14574.1
Unique NamemRNA_H-paniculata_contig6686.14574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6686.14574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6686contigH-paniculata_contig6686:1523..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.002781-CDS-H-paniculata_contig6686:1522..15741622930791.002781-CDS-H-paniculata_contig6686:1522..1574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 1523..1574 +
1691481453.7822778-CDS-H-paniculata_contig6686:1522..15741691481453.7822778-CDS-H-paniculata_contig6686:1522..1574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 1523..1574 +
1622930791.0171-CDS-H-paniculata_contig6686:3586..37171622930791.0171-CDS-H-paniculata_contig6686:3586..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 3587..3717 +
1691481453.7943318-CDS-H-paniculata_contig6686:3586..37171691481453.7943318-CDS-H-paniculata_contig6686:3586..3717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6686 3587..3717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6686.14574.1prot_H-paniculata_contig6686.14574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6686 1523..3717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6686.14574.1

>prot_H-paniculata_contig6686.14574.1 ID=prot_H-paniculata_contig6686.14574.1|Name=mRNA_H-paniculata_contig6686.14574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
DVLTNRSITTERRKQPTDCLRVRRVATTNFWTPLIASKRTTIDAVGEERA
KTQPGEKLIPP
back to top

mRNA from alignment at H-paniculata_contig6686:1523..3717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6686.14574.1 ID=mRNA_H-paniculata_contig6686.14574.1|Name=mRNA_H-paniculata_contig6686.14574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2195bp|location=Sequence derived from alignment at H-paniculata_contig6686:1523..3717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTTTGACAAACAGAAGCATCACTACGGAGAGGAGGAAACAGCCAAC
AGGTGGGGGGCGTCGTACACGCTGCAGTCATTTTATCTCTAATGTTTGTC
ATTGACTCAAGGGGATCTTTACGCATTTTCCAGGGGTATTTTGTGGCTGA
AAATCTTACTTCTTGTTTTTTTTCGTATTCGAAAACGCTCCTCCGCGAAG
CTGGGCACCGCATCCAGGTGTTGCTGTACCGCGGCCACACGAAACAAATT
GCACTACACGTAAAATAGCACTTGCTACCATTCTGAGGCTACACGAGGGT
CTCACCGTGATCCGTCCTACCGAGGATGTGTTCACATGGACGAACACACA
ATTGCATTACGCATGTTCAATGTTACATGCACTCAGCCGTGTATATTCAC
TGATCGGTTGTAGGGTACTAGGGAAGGGGATCAACGTTTTAGAGGAGCAA
TCACTTCAAAGTTTGTGCGCTCAAGGTGTCTGCTGGGTAGCAAACCGAGC
CTCTATTATTAAGGGCCTTCAACATTGTGATCATGGACCATATAGCACAG
CACCGTCTCCTTCTAGCTGCTATGTATGCACTACGGAAGACAGCAGACAT
TCAATGGCAATGCAGTTCAGCAGAGTAAATAACCTTGGTTTTATCTGTGG
GAGCGTTTTTTGTCTTTCTGTGGCCATTTTTGCAAATTTGAATTCGGGTG
TTGTTGATGTTTCATCCTTTGGATTCACAAATCCAGTTTTCGCGCCACCT
GCTCGTCGAAATTGAATATTTATTTGCACGCGTCAGACGAGTTGTTCTAC
GCTTGTGCACCGATTGCGGTGCAAAACGATGGCTCCGTCTCGTGTGCGGC
ACCCGAGCTACTAATTTCTGCACAGCATGCGCCCACGACTGAAGAAAGAC
GACTATTAATAGTTGAGGTTATAAACTGACTTCCTGTTGTGACCAACTTA
GCAAATCAGGTTGTTTCGGAACAGAAAAGACATCCAACAATAAATTTAGT
ACGATACAAATATTGAGCGTTGCATTCATTTGTGAGCAGAATCATACCGC
TCACCTGTCGGTGCTTTATGTACTTTCTGTAGTGGACTGTCTATCTGAAC
ACGGGGAGCACCCTAGAGCTCTATCCTATTCAGCATTGCCGTAGGTAGCC
GTCTTTCGTCTGTGTGAGGTAGAGGTTAGATGGAGATTGGGCGAGACCCA
GCGCTACTCAGTCTTACCAGTCAGTCAGTCATCACTTGTCAAATTGAAGA
AATTCGATAAGTGAGGCCTTTGTTGAAGCAACCTAGAGCTCTATCCCATT
AAGCGTTGCCGTACGTAGCCGTCTTTCGTCTGTGTGAGGTAGAGGTTAGA
TGGAGATTGGGCGAGACCCAGCGCTACTCAGGATTACCAGTCAGTGTCAT
CACTGGTCAAATGGAAGAAATTCGACAAGTGAGGCCTTTGTTGATGTCTC
CGCCACCTAATAGTTATCTCGCAACTGGTGAAAGTAAATTGGATAACTCA
CTGCCCAACGTGTTCAAGATCCTCTCACGTGCCAGTGAAACGTGTACTGG
ACGGTACCCTCTATTCCCGAGCCTGAGGTGCCTGTCAGTTCCGCTTCAGT
AGATCTACCGTAGGTAGACCCGTGGTTTCTCTATACGTCGCAAAATAATC
ACTATAATAGAGGGACCGAAACCATGTGCCGCGCAGACATTCGTTCTAAA
CGAGGGAGTCCGATTTTCCGTTTTTCCGATTCTCTGATTTTGTCTTGAGA
TTTTTTACCGTAAATGTTCAATTCATTTTTTCCCCCCCTGCATTTCCTCG
TTGAATTTCTCTAAATTAACTGCTTGCGGTACAGAAATTATAAAGACAAC
AATCGGAAATCGGAACTTCAGACTGGCTTGTTTAGAACGGCCGTAGGCAC
TTTTTGTGCTCAAACCTTGGGCCAAGGTTGCATTGTCTGTTTGTGTGCAA
TACTGTAGTGTTGTACTGTGTGGATCAACAGCCAGTATCTTGTTGCTTGC
TTCAAACATGTAACATTTTATTATTGTCTCTGTTTCATAATTCTGTCATA
TTTCTCGAGATCAGACTGCCTTCGCGTCAGGAGAGTCGCCACGACCAATT
TTTGGACGCCATTGATCGCGTCAAAGCGCACCACCATTGACGCGGTTGGA
GAAGAGCGCGCGAAGACCCAACCAGGGGAAAAGCTAATCCCCCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6686:1523..3717+

>mRNA_H-paniculata_contig6686.14574.1 ID=mRNA_H-paniculata_contig6686.14574.1|Name=mRNA_H-paniculata_contig6686.14574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig6686:1523..3717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGTTTTGACAAACAGAAGCATCACTACGGAGAGGAGGAAACAGCCAAC
AGGATGTTTTGACAAACAGAAGCATCACTACGGAGAGGAGGAAACAGCCA
ACAGACTGCCTTCGCGTCAGGAGAGTCGCCACGACCAATTTTTGGACGCC
ATTGATCGCGTCAAAGCGCACCACCATTGACGCGGTTGGAGAAGAGCGCG
CGAAGACCCAACCAGGGGAAAAGCTAATCCCCCCCACTGCCTTCGCGTCA
GGAGAGTCGCCACGACCAATTTTTGGACGCCATTGATCGCGTCAAAGCGC
ACCACCATTGACGCGGTTGGAGAAGAGCGCGCGAAGACCCAACCAGGGGA
AAAGCTAATCCCCCCC
back to top