mRNA_H-paniculata_contig12278.1450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12278.1450.1
Unique NamemRNA_H-paniculata_contig12278.1450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12278.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12278contigH-paniculata_contig12278:4238..4716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.7029088-UTR-H-paniculata_contig12278:4237..44041622928949.7029088-UTR-H-paniculata_contig12278:4237..4404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12278 4238..4404 +
1691480678.6011753-UTR-H-paniculata_contig12278:4237..44041691480678.6011753-UTR-H-paniculata_contig12278:4237..4404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12278 4238..4404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.7184062-CDS-H-paniculata_contig12278:4404..47161622928949.7184062-CDS-H-paniculata_contig12278:4404..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12278 4405..4716 +
1691480678.6092732-CDS-H-paniculata_contig12278:4404..47161691480678.6092732-CDS-H-paniculata_contig12278:4404..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12278 4405..4716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12278.1450.1prot_H-paniculata_contig12278.1450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12278 4405..4716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12278.1450.1

>prot_H-paniculata_contig12278.1450.1 ID=prot_H-paniculata_contig12278.1450.1|Name=mRNA_H-paniculata_contig12278.1450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MSGSSPITTTLLVHAPGPAPEHAPPSPSSDGEDITITRDHSNDSNTETLR
PSVVKATAAAAAASFKTASAARPLLPNVTQDVLAADAAAGSEKVSRVRVE
LDFQ
back to top

mRNA from alignment at H-paniculata_contig12278:4238..4716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12278.1450.1 ID=mRNA_H-paniculata_contig12278.1450.1|Name=mRNA_H-paniculata_contig12278.1450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=479bp|location=Sequence derived from alignment at H-paniculata_contig12278:4238..4716+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAAGTACAGACAGTTTGTCCCTTCGGACACGACTAGCCCATCATTG
ACAGCTCCCTATTTCTCTTGCTGAAAGAGTGGCGGGAAGTCGTCCTTCAA
TTGCCGTGCCAGACGTGTAGTGCGGTAGCCGGCGAAACTGCCGTCCACAA
CGGTCGGGTCGCTCGGGATGTCTGGATCTTCGCCGATAACTACGACGCTT
CTAGTGCACGCGCCTGGCCCAGCTCCCGAGCACGCCCCACCCTCCCCATC
CTCTGATGGAGAAGACATCACCATCACCAGAGATCACTCCAATGACTCGA
ATACCGAGACTCTGCGACCGTCTGTCGTCAAGGCAACAGCTGCCGCCGCT
GCCGCATCTTTCAAGACGGCTTCTGCAGCTAGACCCCTGCTTCCAAATGT
AACGCAGGATGTACTGGCGGCTGATGCTGCGGCGGGTTCGGAGAAAGTAT
CTCGGGTTAGGGTGGAGCTTGACTTCCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12278:4238..4716+

>mRNA_H-paniculata_contig12278.1450.1 ID=mRNA_H-paniculata_contig12278.1450.1|Name=mRNA_H-paniculata_contig12278.1450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig12278:4238..4716+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGATCTTCGCCGATAACTACGACGCTTCTAGTGCACGCGCCTGG
CCCAGCTCCCGAGCACGCCCCACCCTCCCCATCCTCTGATGGAGAAGACA
TCACCATCACCAGAGATCACTCCAATGACTCGAATACCGAGACTCTGCGA
CCGTCTGTCGTCAAGGCAACAGCTGCCGCCGCTGCCGCATCTTTCAAGAC
GGCTTCTGCAGCTAGACCCCTGCTTCCAAATGTAACGCAGGATGTACTGG
CGGCTGATGCTGCGGCGGGTTCGGAGAAAGTATCTCGGGTTAGGGTGGAG
CTTGACTTCCAGATGTCTGGATCTTCGCCGATAACTACGACGCTTCTAGT
GCACGCGCCTGGCCCAGCTCCCGAGCACGCCCCACCCTCCCCATCCTCTG
ATGGAGAAGACATCACCATCACCAGAGATCACTCCAATGACTCGAATACC
GAGACTCTGCGACCGTCTGTCGTCAAGGCAACAGCTGCCGCCGCTGCCGC
ATCTTTCAAGACGGCTTCTGCAGCTAGACCCCTGCTTCCAAATGTAACGC
AGGATGTACTGGCGGCTGATGCTGCGGCGGGTTCGGAGAAAGTATCTCGG
GTTAGGGTGGAGCTTGACTTCCAG
back to top