mRNA_H-paniculata_contig6589.14459.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6589.14459.1
Unique NamemRNA_H-paniculata_contig6589.14459.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6589.14459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6589contigH-paniculata_contig6589:6992..7724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size733
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6589.14459.1prot_H-paniculata_contig6589.14459.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6589 7023..7514 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.0302143-UTR-H-paniculata_contig6589:6991..70221622930776.0302143-UTR-H-paniculata_contig6589:6991..7022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 6992..7022 +
1691481447.0472507-UTR-H-paniculata_contig6589:6991..70221691481447.0472507-UTR-H-paniculata_contig6589:6991..7022Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 6992..7022 +
1622930776.081595-UTR-H-paniculata_contig6589:7514..77241622930776.081595-UTR-H-paniculata_contig6589:7514..7724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 7515..7724 +
1691481447.0673335-UTR-H-paniculata_contig6589:7514..77241691481447.0673335-UTR-H-paniculata_contig6589:7514..7724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6589 7515..7724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930776.0592806-CDS-H-paniculata_contig6589:7022..75141622930776.0592806-CDS-H-paniculata_contig6589:7022..7514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6589 7023..7514 +
1691481447.0590749-CDS-H-paniculata_contig6589:7022..75141691481447.0590749-CDS-H-paniculata_contig6589:7022..7514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6589 7023..7514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6589.14459.1

>prot_H-paniculata_contig6589.14459.1 ID=prot_H-paniculata_contig6589.14459.1|Name=mRNA_H-paniculata_contig6589.14459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp
MEGPERGGDAGVGADGNGGAGPEGVGGADVEGHMGAGAGEHGVGTWGFTG
APATSKDQPRPNNKPLPSYPPPQPPTIDRPTRAGYAAIGYALTSTDLYHL
PHFPPLPLADPTSLQASKISIMRCRKSYARCGFWKGHGCGHMAPRLGNTH
QSEGHDCDQGRVA*
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mRNA from alignment at H-paniculata_contig6589:6992..7724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6589.14459.1 ID=mRNA_H-paniculata_contig6589.14459.1|Name=mRNA_H-paniculata_contig6589.14459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=733bp|location=Sequence derived from alignment at H-paniculata_contig6589:6992..7724+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGAATAGTGGAGCCGAAGCGGGCGGGAATGGAGGGGCCGGAGCGAG
GGGGGGATGCTGGAGTCGGAGCGGACGGGAACGGAGGAGCCGGACCGGAG
GGGGTTGGAGGAGCTGACGTGGAGGGACACATGGGAGCGGGCGCTGGGGA
ACACGGCGTCGGAACATGGGGATTCACAGGGGCACCAGCAACATCGAAAG
ACCAACCGCGGCCAAACAACAAACCGCTGCCAAGCTACCCACCGCCGCAA
CCTCCTACAATCGATCGGCCCACGCGTGCGGGGTACGCAGCCATCGGATA
CGCCCTCACCAGTACCGATCTTTACCACCTACCTCATTTTCCACCTTTAC
CGCTGGCGGACCCGACGAGTCTGCAAGCTTCCAAAATCTCCATAATGCGA
TGCAGGAAGTCGTACGCACGGTGCGGATTTTGGAAAGGACACGGCTGTGG
ACACATGGCACCCCGACTGGGTAACACCCATCAAAGCGAAGGTCATGACT
GCGATCAAGGACGGGTCGCCTGAGACCACGAAACTGCACACGCGGTGGAT
CGTATGTTCAATGCGGCACGCTAAAAGGGGGCAGCAGGAATAGAGGGCCC
GGAGGTTTTCCGTCAGTTGATGACGAACATGGCGAAGGAGCTACTGGAGG
TGGACCTGATATAAGCATAATCTTCTCTGGGGTCCTTTGCAGTCGCAGAG
GGCAGCTATTTGAAAGACTGGCTGCAATCGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig6589:6992..7724+

>mRNA_H-paniculata_contig6589.14459.1 ID=mRNA_H-paniculata_contig6589.14459.1|Name=mRNA_H-paniculata_contig6589.14459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig6589:6992..7724+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGGGCCGGAGCGAGGGGGGGATGCTGGAGTCGGAGCGGACGGGAA
CGGAGGAGCCGGACCGGAGGGGGTTGGAGGAGCTGACGTGGAGGGACACA
TGGGAGCGGGCGCTGGGGAACACGGCGTCGGAACATGGGGATTCACAGGG
GCACCAGCAACATCGAAAGACCAACCGCGGCCAAACAACAAACCGCTGCC
AAGCTACCCACCGCCGCAACCTCCTACAATCGATCGGCCCACGCGTGCGG
GGTACGCAGCCATCGGATACGCCCTCACCAGTACCGATCTTTACCACCTA
CCTCATTTTCCACCTTTACCGCTGGCGGACCCGACGAGTCTGCAAGCTTC
CAAAATCTCCATAATGCGATGCAGGAAGTCGTACGCACGGTGCGGATTTT
GGAAAGGACACGGCTGTGGACACATGGCACCCCGACTGGGTAACACCCAT
CAAAGCGAAGGTCATGACTGCGATCAAGGACGGGTCGCCTGAATGGAGGG
GCCGGAGCGAGGGGGGGATGCTGGAGTCGGAGCGGACGGGAACGGAGGAG
CCGGACCGGAGGGGGTTGGAGGAGCTGACGTGGAGGGACACATGGGAGCG
GGCGCTGGGGAACACGGCGTCGGAACATGGGGATTCACAGGGGCACCAGC
AACATCGAAAGACCAACCGCGGCCAAACAACAAACCGCTGCCAAGCTACC
CACCGCCGCAACCTCCTACAATCGATCGGCCCACGCGTGCGGGGTACGCA
GCCATCGGATACGCCCTCACCAGTACCGATCTTTACCACCTACCTCATTT
TCCACCTTTACCGCTGGCGGACCCGACGAGTCTGCAAGCTTCCAAAATCT
CCATAATGCGATGCAGGAAGTCGTACGCACGGTGCGGATTTTGGAAAGGA
CACGGCTGTGGACACATGGCACCCCGACTGGGTAACACCCATCAAAGCGA
AGGTCATGACTGCGATCAAGGACGGGTCGCCTGA
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