mRNA_H-paniculata_contig6548.14402.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6548.14402.1
Unique NamemRNA_H-paniculata_contig6548.14402.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: D8LFD1_ECTSI (PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD1_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.900e-74
Identity = 123/169 (72.78%), Postives = 143/169 (84.62%), Query Frame = 1
Query:    1 GRKMEEDLTGGEDQKSAKHRLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANE 507
            G  M E     E   S + R+LGLGSAGVDFIA VD +P AD KV+T+SL+++GGGN GNTL AASRLGLDACLATKVGSDANGRLIL+GL+EEGVDVSRVIVSDATPSAFTY+IVD++G TRTCLHTPQTED+L +EI+  LL+ V+ VHLDSRHT AA+ALA+LANE
Sbjct:   77 GTAMSEGQALDEVDSSGRPRVLGLGSAGVDFIAAVDRYPTADEKVQTQSLQVLGGGNCGNTLSAASRLGLDACLATKVGSDANGRLILQGLEEEGVDVSRVIVSDATPSAFTYVIVDKEGGTRTCLHTPQTEDILPEEITPDLLDVVAAVHLDSRHTPAAVALAKLANE 245          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: W7TU72_9STRA (Pfkb-like carbohydrate kinase family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU72_9STRA)

HSP 1 Score: 220 bits (560), Expect = 1.950e-66
Identity = 119/232 (51.29%), Postives = 157/232 (67.67%), Query Frame = 1
Query:   58 RLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVV 753
            ++LG+G  GVD +A V+++PAAD+K+RT   +I GGGN GNTL    RLG+   + TKVG+DA G +ILE    +G+D   VI      S FTY+IVD  G TRTCLHTP +ED+   EI+ A+L+GV  +HLD R+T AAI LA+LAN  RGIPV++DAEKDRPH +EL+PL D +  N  FP+AFTG            +S EE +  LL  GRA+LV +TLGA+G +V+
Sbjct:   54 KVLGMGITGVDLLAYVETYPAADAKIRTSDFKIQGGGNAGNTLTGLCRLGVRTEILTKVGNDAYGSMILEEFAIDGLDTRHVIRKAGISSPFTYVIVDMAGQTRTCLHTP-SEDLTEDEINPAVLDGVDFLHLDGRNTLAAIRLAQLANA-RGIPVMLDAEKDRPHLRELVPLCDFLATNAVFPKAFTGA-----------ASTEEGMARLLDMGRARLVFTTLGAKGSMVM 272          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: L1K4H8_GUITC (PfkB domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K4H8_GUITC)

HSP 1 Score: 213 bits (543), Expect = 1.430e-64
Identity = 114/234 (48.72%), Postives = 150/234 (64.10%), Query Frame = 1
Query:   58 RLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            R+LGLG A VDFIA VD FP  D K+R+ S  + GGGN  NTL    RLG++A LATK+G DANG  I+  L ++GV  S  I  +   S FTYIIVD    TRTC+HTP  E++L +E++A  L+GVS++HLDSR+T A+I LA+LA E R IPVV+DAEKDRP+ +ELLPLAD ++ N  +P  F              +   + ++ LL  G AK++ ST G  GC  + R
Sbjct:   19 RVLGLGVAAVDFIATVDHFPQPDDKIRSTSFSMQGGGNCANTLTCVRRLGVEAILATKLGKDANGNSIISELNDDGVSTSLCICKEGLDSPFTYIIVDDATHTRTCIHTPIQEELLEEEVAAEWLDGVSLLHLDSRNTRASIKLAKLARE-RSIPVVLDAEKDRPYMRELLPLADVIVTNSKYPLVFDS------------AGFVQGMQALLQLGSAKMIISTQGDRGCTALVR 239          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: A0A7S3ENN4_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ENN4_9RHOD)

HSP 1 Score: 196 bits (498), Expect = 9.560e-58
Identity = 104/234 (44.44%), Postives = 144/234 (61.54%), Query Frame = 1
Query:   58 RLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            +++GLG+A +D +A VD+FP  D K+RT S E+ GGGN  NTL A  RLG+   + TK+G D  G+ I   L  +GVD S VIV     S FTY++ ++ G TRTC+HTP   ++L  E+    L+    +HLD RHT AAI +A+LA E RG+P+ +D EKDRPH +ELLPLAD +I N+ +P  F G  V               +  LL  GRAK V +TLGA+G +++ +
Sbjct:   30 KVVGLGAAAIDLLASVDTFPNPDDKIRTVSFEVAGGGNCANTLTAVRRLGIPCSILTKIGDDGTGKQITSELDGDGVDTSNVIVQRNMNSPFTYVLTERAGGTRTCIHTPAESELLPSEVKPEWLDEADHLHLDGRHTQAAIEMAKLAIE-RGVPISLDVEKDRPHIRELLPLADFIITNQRYPTVF-GEDVY------------RGMHTLLRLGRAKFVVTTLGADGSLLMCK 249          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: A0A5J4Z8Y0_PORPP (Ribokinase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8Y0_PORPP)

HSP 1 Score: 195 bits (495), Expect = 2.190e-56
Identity = 108/234 (46.15%), Postives = 147/234 (62.82%), Query Frame = 1
Query:   61 LLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLL-SQGRAKLVASTLGAEGCVVVTR 759
            +L LG+  VDFIA V  FP  D KVRTESL+++GGGN  NT    +RLG      ++VG+DANG+  L+ L  EG+DVS V  S    + FTY+IVD+   TRTC+HTP   ++   ++  ++L+G+S+VHLD RHT AAI LA+ AN  RGIPVV+D EKDRPH +ELLPL D ++ N  +P  F+   +           R +A+  LL S  R K V +T GAEG  ++ +
Sbjct:   83 VLVLGAVCVDFIARVQQFPQPDDKVRTESLDVLGGGNAANTATCLARLGAQVRFVSQVGTDANGQGCLDELAAEGIDVSYVCRSAQVDTPFTYVIVDEQTQTRTCIHTPSALELGPDQLDESMLDGISLVHLDGRHTLAAIQLAKWANA-RGIPVVLDVEKDRPHIRELLPLVDYIVTNAKYPLLFSPDSLG----------RRDAISKLLESCERVKFVLTTNGAEGSTMMRK 305          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: M1V792_CYAM1 (Similar to ketohexokinase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V792_CYAM1)

HSP 1 Score: 196 bits (497), Expect = 2.370e-56
Identity = 112/235 (47.66%), Postives = 152/235 (64.68%), Query Frame = 1
Query:   61 LLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEI--SAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            +LGLG+  +D++A V+ +P  D K+R++SL I GGGN  NTL A +RLG+   LATK+G DA GR IL  L+ EGVD S V +     S  TY+IVD    TRTC+HTP  E++LA ++    AL E V++VHLDSRHT+AA+ALAR A + RGIPVV+D EKDRPH  +L+ LAD +I N ++P  F+ +      +   +S     L  ++  GRA    ST GAEG ++V R
Sbjct:  103 VLGLGATALDYLATVERYPQPDEKIRSQSLTIQGGGNVANTLTALARLGVATRLATKLGDDAIGRDILAELQHEGVDTSFVAIKTNMNSPITYVIVDASTRTRTCIHTPAAEELLASDVVNRDALWERVALVHLDSRHTSAALALAREAVQ-RGIPVVLDIEKDRPHALDLVALADYIITNATYPLHFSAQPGMSANRLTALSG----LVAIMDYGRAAFAISTQGAEGSLMVRR 332          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: M2W7G2_GALSU (PfkB-type carbohydrate kinase family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7G2_GALSU)

HSP 1 Score: 191 bits (485), Expect = 2.430e-55
Identity = 102/238 (42.86%), Postives = 147/238 (61.76%), Query Frame = 1
Query:   46 SAKHRLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            S   +++G+G AG+DFIA V +FP  D K+RT    I GGGN  NTL    RLG++  L TK+G D +G+ ILE  + EG+D S +I  + T SAFTY+IVD    TRTC+HTP   ++ ++E++ + L G S++HLD RH +AA+ +A+ A + +GIP+V+D E+ R   + LL LAD +I N  FP  + G+            +R   L  LL    A+ V STLG EGCV+++R
Sbjct:   44 SKDKKVVGVGMAGLDFIAKVATFPEPDQKLRTLDSSIQGGGNAANTLTCLRRLGIEVILVTKIGDDISGQSILEEFEREGMDTSFIIRQEETQSAFTYVIVDVSTSTRTCIHTPSKAELTSEEVNVSCLNGASLLHLDGRHPSAALKIAQHARD-KGIPIVLDVERRREGLENLLCLADYIITNAEFPSEYFGQL-----------NRLNGLEKLLDAYPARWVISTLGKEGCVMMSR 269          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: R7QG38_CHOCR (PfkB domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG38_CHOCR)

HSP 1 Score: 189 bits (481), Expect = 1.010e-54
Identity = 98/234 (41.88%), Postives = 145/234 (61.97%), Query Frame = 1
Query:   58 RLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            R+LGLG +GVD +A VD +P  D KVRT S+ ++GGGN  NTL A  RLG+   L +KVG D  G   ++ L+ +GVD S V+  +   ++FTY+IVD    TRTC+ T   ED+L  EI  ++L+  S+V LD RHT AA+ LA+ A   RGIP+++D E++RP+ ++LLP AD ++ N  +P  F+             + + +A+  LL    AK+V +TLG+ G ++V R
Sbjct:   60 RVLGLGMSGVDILATVDGYPKPDDKVRTTSVSVLGGGNTANTLTAVRRLGMPCALVSKVGKDMYGSAAIQELQGDGVDTSLVLAKEGVNTSFTYVIVDTKNDTRTCISTASNEDLLVSEIDESMLDNASLVVLDGRHTLAALQLAKFAKN-RGIPILLDVERERPYIRDLLPYADYIVTNSVYPFVFSPGA----------TGKVDAMEMLLEACDAKMVITTLGSSGSIMVQR 282          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: A0A7S1T7S5_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T7S5_9RHOD)

HSP 1 Score: 190 bits (482), Expect = 1.590e-54
Identity = 101/237 (42.62%), Postives = 149/237 (62.87%), Query Frame = 1
Query:   49 AKHRLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            ++  +LGLG+AG+DF+AVV SFP  D+K+RT   +++GGGN  NTL   SRL + + L +K G D NG  I   L+ +GV+   ++      S FTY+IVD    TRTC+HTP TED+L  +++  +L+GV +VHLD RHTTAAI +A+ A + R IPV +D E+DRP  ++L+PL D +  NR +P  F        T+  L     + ++ LL  GRA  V +TLG++G  ++ +
Sbjct:   84 SRPHVLGLGTAGLDFLAVVSSFPQPDTKIRTSEFKMLGGGNCANTLTGLSRLQIASSLVSKCGDDVNGNQIAAELEADGVNTRYLVRKAGMYSPFTYVIVDAQENTRTCIHTPATEDLLLSDLAPEMLDGVDLVHLDGRHTTAAIQMAQWAVD-RAIPVALDVERDRPGIRDLIPLVDFIFTNRQYPGIFAP------TEATLT----DQMQALLRCGRATSVTTTLGSDGAALLCK 309          
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Match: A0A0L0G058_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G058_9EUKA)

HSP 1 Score: 183 bits (465), Expect = 2.420e-52
Identity = 101/239 (42.26%), Postives = 149/239 (62.34%), Query Frame = 1
Query:   49 AKHRLLGLGSAGVDFIAVVDSFPAADSKVRT-ESLEIMGGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIVSDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEI-SAALLEGVSVVHLDSRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFPQAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR 759
            + HR++GLG+ G+D +A V ++P  D K RT + ++  GGGN  NTLVA SRLGL   L  K+G DANG L+ + L +EG+ V  V + D   +  TYIIVDQ   TRTC+H+P  E +L  ++   A+L+  ++  LD+RHT AAI LA+ A + R IPV++D E++R   ++L+PLAD ++ N ++PQ +     N          R EA+  LL +  AK+V +TLG+ G V+V R
Sbjct:    9 SSHRIVGLGACGIDMLAAVRTYPQPDEKTRTIDPIQYYGGGNCSNTLVAVSRLGLSCSLVAKIGQDANGALVRDELIKEGICVDHVYIRDYLQTPLTYIIVDQSASTRTCIHSPAAEGVLCGDLYPGAILKNATMCILDTRHTEAAIMLAKAAQQ-RCIPVLLDVERERDGLQDLIPLADYLVTNTAYPQLYNPTSNN----------RVEAMCSLLLESNAKMVITTLGSAGSVLVVR 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6548.14402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFD1_ECTSI1.900e-7472.78PfkB-type carbohydrate kinase n=1 Tax=Ectocarpus s... [more]
W7TU72_9STRA1.950e-6651.29Pfkb-like carbohydrate kinase family protein n=2 T... [more]
L1K4H8_GUITC1.430e-6448.72PfkB domain-containing protein n=2 Tax=Guillardia ... [more]
A0A7S3ENN4_9RHOD9.560e-5844.44Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z8Y0_PORPP2.190e-5646.15Ribokinase n=1 Tax=Porphyridium purpureum TaxID=35... [more]
M1V792_CYAM12.370e-5647.66Similar to ketohexokinase n=1 Tax=Cyanidioschyzon ... [more]
M2W7G2_GALSU2.430e-5542.86PfkB-type carbohydrate kinase family protein n=1 T... [more]
R7QG38_CHOCR1.010e-5441.88PfkB domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A7S1T7S5_9RHOD1.590e-5442.62Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0L0G058_9EUKA2.420e-5242.26Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6548contigH-paniculata_contig6548:8725..12121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.8
Seed ortholog evalue2.7e-60
Seed eggNOG ortholog2880.D8LFD1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the carbohydrate kinase PfkB family
EggNOG OGsKOG2947@1,KOG2947@2759
Ec32 ortholog descriptionPfkB-type carbohydrate kinase
Ec32 orthologEc-07_005840.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size759
Cds size750
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930767.9884028-UTR-H-paniculata_contig6548:8724..87331622930767.9884028-UTR-H-paniculata_contig6548:8724..8733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6548 8725..8733 +
1691481443.5300622-UTR-H-paniculata_contig6548:8724..87331691481443.5300622-UTR-H-paniculata_contig6548:8724..8733Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6548 8725..8733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930768.0126257-CDS-H-paniculata_contig6548:8733..88341622930768.0126257-CDS-H-paniculata_contig6548:8733..8834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 8734..8834 +
1691481443.5466163-CDS-H-paniculata_contig6548:8733..88341691481443.5466163-CDS-H-paniculata_contig6548:8733..8834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 8734..8834 +
1622930768.029927-CDS-H-paniculata_contig6548:9215..92961622930768.029927-CDS-H-paniculata_contig6548:9215..9296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 9216..9296 +
1691481443.5572746-CDS-H-paniculata_contig6548:9215..92961691481443.5572746-CDS-H-paniculata_contig6548:9215..9296Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 9216..9296 +
1622930768.0488842-CDS-H-paniculata_contig6548:9883..100891622930768.0488842-CDS-H-paniculata_contig6548:9883..10089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 9884..10089 +
1691481443.5709565-CDS-H-paniculata_contig6548:9883..100891691481443.5709565-CDS-H-paniculata_contig6548:9883..10089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 9884..10089 +
1622930768.0948925-CDS-H-paniculata_contig6548:10900..110121622930768.0948925-CDS-H-paniculata_contig6548:10900..11012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 10901..11012 +
1691481443.5894651-CDS-H-paniculata_contig6548:10900..110121691481443.5894651-CDS-H-paniculata_contig6548:10900..11012Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 10901..11012 +
1622930768.1125736-CDS-H-paniculata_contig6548:11555..117051622930768.1125736-CDS-H-paniculata_contig6548:11555..11705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 11556..11705 +
1691481443.600892-CDS-H-paniculata_contig6548:11555..117051691481443.600892-CDS-H-paniculata_contig6548:11555..11705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 11556..11705 +
1622930768.1296237-CDS-H-paniculata_contig6548:12021..121211622930768.1296237-CDS-H-paniculata_contig6548:12021..12121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 12022..12121 +
1691481443.6098902-CDS-H-paniculata_contig6548:12021..121211691481443.6098902-CDS-H-paniculata_contig6548:12021..12121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6548 12022..12121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6548.14402.1prot_H-paniculata_contig6548.14402.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6548 8734..12121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6548.14402.1

>prot_H-paniculata_contig6548.14402.1 ID=prot_H-paniculata_contig6548.14402.1|Name=mRNA_H-paniculata_contig6548.14402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=250bp
MEEDLTGGEDQKSAKHRLLGLGSAGVDFIAVVDSFPAADSKVRTESLEIM
GGGNGGNTLVAASRLGLDACLATKVGSDANGRLILEGLKEEGVDVSRVIV
SDATPSAFTYIIVDQDGCTRTCLHTPQTEDMLAQEISAALLEGVSVVHLD
SRHTTAAIALARLANEIRGIPVVVDAEKDRPHFKELLPLADCVICNRSFP
QAFTGRRVNYCTKTCLMSSREEALRHLLSQGRAKLVASTLGAEGCVVVTR
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mRNA from alignment at H-paniculata_contig6548:8725..12121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6548.14402.1 ID=mRNA_H-paniculata_contig6548.14402.1|Name=mRNA_H-paniculata_contig6548.14402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3397bp|location=Sequence derived from alignment at H-paniculata_contig6548:8725..12121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGAAAATGGAGGAGGACCTAACAGGAGGCGAGGATCAAAAGAGCGC CAAGCATCGTCTGTTAGGGCTGGGTTCGGCCGGGGTGGATTTCATTGCTG TCGTAGACAGGTGCGAAAGGTTTAAGTAGCAAATTTTAAAGCTATGCTGA CAGCGATATTTCAGTATGTACTGATAGAGAATGAAACGTAGAGTCGCCCT ATCAGGGCCGTAATGAAACAACAGCACATTTCATCGATACATTATTGTGT TCACAACACTGTAACCCAGAAAAGTCGAAGTTCTCGGTTAACTCCATCCC CATCTCTCGCACCTTCTCGGCTATCTATCGCTCTTTGTCATACCGCCCCT TTCGGTCAATACCGGCCCTTTCGGGATGCATATATAACTCACCATTCGTT GACGTCTTGAATCACCGCGTTTTCTACCGCACGTTTTGTCCGTCATAATT ACTGAACGCGTACTATGCATCGACGTTATGATACTGCACAGCTTTCCCGC GGCCGACTCAAAAGTCCGGACGGAATCCTTGGAAATAATGGGAGGCGGGA ACGGCGGGAACACCCTTGTCGCGTGAGTACATACCCTCATTGCGACTCTT GTTTTAAGTATGGCTTGGGGCGGACAGCAGGACCTCCAACCATTCTATTA GTTACGGAGCAAATGTTTCGTGAATCTTGCCGCTGAACCCGTTCCAAGGT CCGAGCTTTCTCGTGGGCAGGGCCTTTTGTACCTCTAGGCATCGTTGATC ATTGTTTTCAAACGATATCTCAATTCACAATCGTATGATGTCACGTCTGA AACATTATGGTAGCTGTAGATGCGTACGAGTATCAGTGATCGGTGGGAAG TTGATTTGGTGACACTAGGTGACAAACTGACGGAGAAAGTTATTGTTGCT ATAAGGCGCCAAAGAGGAACTCGCTGATGCTGATTGGAATCGTAACCATA CTCGGTACGTAGCCGTATATTTGTCCTTCTTTCTCTTGGCAACAACATGG TGTAGACATGCATCAGTCTGACCCTTTCATTGGAATAATACTTGACCCCT GCAAAGTAAGGAGAGAAGAGCTAGCGACCCCCTCCCCCCCGGGGCGCCTC ATTACGTCGCGCACTATAGTATTTCGACGTTCGAAATGTGCCATACGTGT TCCCGACAGAGCAAGTCGTCTTGGCCTAGACGCGTGCTTGGCCACCAAGG TGGGCTCTGATGCGAATGGACGGCTGATTTTGGAAGGCCTGAAAGAAGAA GGTGTGGATGTCTCTCGCGTTATCGTGAGCGATGCTACTCCTTCGGCATT TACCTACATAATCGTGGATCAGGACGGCTGCACCCGGACATGCCTGCACA CGCCACAGACCGAGGGTGCGTGTAAATGCAGGAACTACACAGGGTACATT TCCCCTCGGTGACAGTGTTCAGTGTTCTGTCAACTTAACTTTCACGAATT CGACCGTGCTCTTGAGGCCAAGTGTAGTGCCTTTAGAATGTATCTCGTCA GGATCTATTGATACATACACCCTCTTACTAGCGCAGGGGCTTCATTCTCC GGAAAATCGAGCCTTCAAACGTTTTTATTCAGGCTCACATGTCATATACC CTGTAAATTGATGTACAGGGTATATGCCATCATTTATCGTCATCGTCGAC ATTTGACCGGAGCCACACGTCGCTGCAGTGTGGTTTGATCTATTTCGGTA TGATTTGGGGCTTACGTTGGTTCGGCTTAATTTGTCGTGCGTTTTCGTAT TTTCATCTCTCTCCCGCTGTCGCTATGGGAACGGGTTGTGCGAAAACGTT TTCAGACAGCATACGATGTAGGTGATGGTGACCTGAGCGTTGAGATGTCG CACTACCTGTTGGAGATGGAAGCGCCCCCACGCTTTCATTGCGATCAAGA AAGGTTTTGGCCGAATGACGAGCCTAACACGATATATCGCTCTTCACAAA AACAAAGCGGTTCTGAAGTCACTGCTGTGGCGACCGTTTCCTCTTGCCAG GTGTGCCGTTTATTTCCCCTTGTTGCCTCAGCGGAAGGTGGGTTTCACGC TAGTGTGATCCAGCGTTCGTTATTGTCATGTATCGGTACGGTGCGACCAT TGTCCCCATCAATTCTATCATGTCAACATCCCTCATTTTTGAGCTCTCGC TGGAATCATACTGACTGATGATACAGACATGCTTGCGCAGGAGATATCTG CAGCTCTTCTTGAAGGAGTGTCTGTAGTGCACCTGGACTCTAGGCACACG ACAGCTGCGATTGCCCTCGCAAGGTTGGCAAACGAAATGTGAGCGTTGTC TGCTTGGGTTTATGTGGGATGCGATTATAATCTAGTGTTCATAGTGGTTG TGATCGCTCGCTGTCTTTCAGAACACAAGTACGCTGTCCATTCTCGCGTG TGTTAATGGGTTCCGTGTTGGCTATGCAGAGCTCTCTTACTGCAAGGTTG ATAAAACACACACATCTCTTTTGCGTATTTTTATTTTTCAAGAGGTTGCC GCGTCACCGCTTGGTTGTCACTGTTACCACCTCATTTACCATTGAGCCTA CTCGACAAGGTCTTATTTTCCGTCTGCACAAGCTGGTGCATCCGCTCTGT CTTGCCTTGTGGAGATGGTCCCATCGGAATGATGCGCAGGGTGTACATCG TGTCCTATATTGAGCATTATCCAACGTGCGTTATTCAACGGGAGTTGCGC CGAGAATGGCGTGGGCCACATGTAGTGTCTTGGACATGCCCCGACCTGCC TTGGACTCTATCTGCTGTGTTTTCTCGTCATCGGTTTACTAATTTTGTCT CTTCACGACGCTCGATAATGGTGGCAACGAGCAGGGGCATCCCAGTCGTG GTGGACGCCGAGAAGGATCGACCGCACTTCAAGGAATTGCTGCCACTGGC AGACTGCGTCATCTGCAATCGGAGCTTTCCGCAGGCCTTCACGGGAAGGC GAGTGAATTATTGCACGAAGACATGCCTAATGTGCATGCTTTGGGCCCTT CACGGCCATATGTCGCTTGGTCAAGGAACCTTGATTTGGTGAACCTACTT CAACCTGCCCAGTAGTAGCGTTCTTTCAAGCGTGCATACTTTCCATCGGT GTACATAACAACTAATGTGTCGTTGGTAGGATGGATTACAGCAGTACAAC TTTGAATGAAGCAGATACCGAGGATGATCGCTTCAAAATCGGTACTTCAC GTGAAAAATTTACATGTGCTTTCTTTAGTGTGTACGGTATTGCTAGCTTC GTTCGCCCTGACTGCTATTTGGTGCATATGTGCTGGTCGTTGCACAGGTC ATCTCGAGAAGAAGCGTTACGGCATCTGCTTTCGCAGGGTAGGGCGAAGC TAGTGGCTAGCACCCTTGGAGCGGAAGGCTGCGTCGTGGTCACAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6548:8725..12121+

>mRNA_H-paniculata_contig6548.14402.1 ID=mRNA_H-paniculata_contig6548.14402.1|Name=mRNA_H-paniculata_contig6548.14402.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1500bp|location=Sequence derived from alignment at H-paniculata_contig6548:8725..12121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAGGACCTAACAGGAGGCGAGGATCAAAAGAGCGCCAAGCATCG
TCTGTTAGGGCTGGGTTCGGCCGGGGTGGATTTCATTGCTGTCGTAGACA
GATGGAGGAGGACCTAACAGGAGGCGAGGATCAAAAGAGCGCCAAGCATC
GTCTGTTAGGGCTGGGTTCGGCCGGGGTGGATTTCATTGCTGTCGTAGAC
AGCTTTCCCGCGGCCGACTCAAAAGTCCGGACGGAATCCTTGGAAATAAT
GGGAGGCGGGAACGGCGGGAACACCCTTGTCGCCTTTCCCGCGGCCGACT
CAAAAGTCCGGACGGAATCCTTGGAAATAATGGGAGGCGGGAACGGCGGG
AACACCCTTGTCGCAGCAAGTCGTCTTGGCCTAGACGCGTGCTTGGCCAC
CAAGGTGGGCTCTGATGCGAATGGACGGCTGATTTTGGAAGGCCTGAAAG
AAGAAGGTGTGGATGTCTCTCGCGTTATCGTGAGCGATGCTACTCCTTCG
GCATTTACCTACATAATCGTGGATCAGGACGGCTGCACCCGGACATGCCT
GCACACGCCACAGACCGAGGAGCAAGTCGTCTTGGCCTAGACGCGTGCTT
GGCCACCAAGGTGGGCTCTGATGCGAATGGACGGCTGATTTTGGAAGGCC
TGAAAGAAGAAGGTGTGGATGTCTCTCGCGTTATCGTGAGCGATGCTACT
CCTTCGGCATTTACCTACATAATCGTGGATCAGGACGGCTGCACCCGGAC
ATGCCTGCACACGCCACAGACCGAGGACATGCTTGCGCAGGAGATATCTG
CAGCTCTTCTTGAAGGAGTGTCTGTAGTGCACCTGGACTCTAGGCACACG
ACAGCTGCGATTGCCCTCGCAAGGTTGGCAAACGAAATACATGCTTGCGC
AGGAGATATCTGCAGCTCTTCTTGAAGGAGTGTCTGTAGTGCACCTGGAC
TCTAGGCACACGACAGCTGCGATTGCCCTCGCAAGGTTGGCAAACGAAAT
CAGGGGCATCCCAGTCGTGGTGGACGCCGAGAAGGATCGACCGCACTTCA
AGGAATTGCTGCCACTGGCAGACTGCGTCATCTGCAATCGGAGCTTTCCG
CAGGCCTTCACGGGAAGGCGAGTGAATTATTGCACGAAGACATGCCTAAT
CAGGGGCATCCCAGTCGTGGTGGACGCCGAGAAGGATCGACCGCACTTCA
AGGAATTGCTGCCACTGGCAGACTGCGTCATCTGCAATCGGAGCTTTCCG
CAGGCCTTCACGGGAAGGCGAGTGAATTATTGCACGAAGACATGCCTAAT
GTCATCTCGAGAAGAAGCGTTACGGCATCTGCTTTCGCAGGGTAGGGCGA
AGCTAGTGGCTAGCACCCTTGGAGCGGAAGGCTGCGTCGTGGTCACAAGG
GTCATCTCGAGAAGAAGCGTTACGGCATCTGCTTTCGCAGGGTAGGGCGA
AGCTAGTGGCTAGCACCCTTGGAGCGGAAGGCTGCGTCGTGGTCACAAGG
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