prot_H-paniculata_contig6542.14397.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6542.14397.1
Unique Nameprot_H-paniculata_contig6542.14397.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length453
Homology
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BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 3.280e-78
Identity = 184/359 (51.25%), Postives = 213/359 (59.33%), Query Frame = 0 
Query:    6 GGGGNSKRASSTPVKWTLVEAEPETPQGQRKQGYARSRGQTSGGRGGSGSAGNWRSSSRDGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYANGMGAYVGGATYYVNRDHSNRDYGNGIPSFEEQKAYKVYMTGMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISADPHSAPGSTEPQAAYDEAAGPTDAIIELNGQGNQPGVESDANGIEPLVPPQQEGLPAASTRGKYDQGVSDAKVSSAVVLNDKGQDTEVLTRKDVTKVTRRKSLTPTAPAWTP 364
            G  GN+K ++STPVKWTLVEA  ETP+G+R +  + +  +   G  GSG  GNW       GR  XXXXXXXXXXXXX                  XX       YVGGATYY  + +       G  SFEEQKAY   MT +AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGV+L DITAGILASDTLQVD ENETMRM+EGWEVWLLPNQATGKQGVPRYIKV P++  AD  +    TEP         P     +    G+ PG E     ++       E   A + + + D              ++KGQ    ++ +D  K      LTP APAWTP
Sbjct:    4 GSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGNWGQ-----GRDGXXXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXGYVGGATYYPTQANV------GAESFEEQKAY---MTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPAVSEADRVN---GTEPSGI------PAQTTQDAASAGDVPGAEDTQTSLK-------EDSTAGAEKKEGDSVTGPVAEEEQQRSSEKGQ----VSHEDAAKT----ELTPLAPAWTP 324
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BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.570e-32
Identity = 72/166 (43.37%), Postives = 97/166 (58.43%), Query Frame = 0 
Query:  149 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISADPHSAPGSTEPQAAYDEAAGPTDAIIELNGQGNQPGVESDANGIEPLVPPQQEGLPAASTRG 314
            AV+Q+E+YF+V NLC D+FMRSYMD EGYIP+AFVANFPG A  G +  DI   + +S+ L+ D  NETMR++EGW++W+LPN A+G  GVPRYIK+               +E +AA   A     A      +  +P  E+  NG   +        P A+T G
Sbjct:   14 AVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKL---------------SEDEAAKIAAQQEAQAAA----KSEEPSAEATMNGAAAVEEDASPAAPTAATEG 159
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BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.660e-24
Identity = 51/98 (52.04%), Postives = 70/98 (71.43%), Query Frame = 0 
Query:  149 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVG 246
            AVR IE  F+  +LC D ++R  MD EGYIP+AFVAN+P VA++G    D+ +GI +S+ L++D ENETMR++E W+ WL P+   G  G PRY+KVG
Sbjct:   85 AVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKVG 181
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BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 109 bits (272), Expect = 2.140e-23
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 0 
Query:  144 YMTGMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGIL-ASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGP 247
            Y+  MAV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  D  +I   +  AS  L+ D  NET+R+KE    WLLPN   G  G PR++K  P
Sbjct:   58 YLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAP 161
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BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A2P4X4J6_9STRA (La domain family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4J6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.710e-22
Identity = 58/140 (41.43%), Postives = 82/140 (58.57%), Query Frame = 0 
Query:  114 GATYYVNRDHSNRDYGNGIPSFEEQKAYKVYMTGMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISAD 253
            G  +   +  SN  Y NG+  +      KV     A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     D   +   +  S+T+++D +NE +R++EGW+ W+ PN A G  GVPRYIKV  +   AD
Sbjct:   89 GGRFGRRQQDSNGTYYNGV--YVPTPDVKV-TAEWAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETIELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKVAENEEPAD 224
[Close]
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A662WMH8_9STRA (HTH La-type RNA-binding domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH8_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.830e-22
Identity = 49/105 (46.67%), Postives = 69/105 (65.71%), Query Frame = 0 
Query:  149 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISAD 253
            A  QIEFYFT +NL RDIFMR +MD +G++P+AFV +F  V     D   +   +  S+T+++D +NE +R+++GW+ W+ PN A G  GVPRYIK G     AD
Sbjct:   35 AKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIKAGEEPSPAD 138
[Close]
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: V9E4H7_PHYPR (HTH La-type RNA-binding domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4H7_PHYPR)

HSP 1 Score: 104 bits (260), Expect = 3.890e-22
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 0 
Query:  149 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISADPHSA 257
            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     D   +   +  S+T+++D +NE +R+++GWE W+ PN A G  GVPRYIK+      AD  +A
Sbjct:  128 AKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETVELDEQNEKIRLRDGWEKWVWPN-AVGGYGVPRYIKLADGEAPADEKTA 235
[Close]
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A4D9CXU2_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXU2_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.520e-22
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 0 
Query:  144 YMTGMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGIL-ASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISADPHSAP 258
            Y+  MAV+QIE+YF+V+NLCRD ++R+++DEEG++P+AF+ NFP VA F  D  +I   +   S  L+ D  NET+R+KE    WLLPN   G  G PR++K  P      P   P
Sbjct:  300 YLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLAFICNFPTVASFAADYLEIVKTLQEVSSVLEYDEANETLRLKEKATAWLLPN-GRGGVGCPRWLKQAPDTPPQQPKLPP 414
[Close]
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.230e-22
Identity = 55/130 (42.31%), Postives = 78/130 (60.00%), Query Frame = 0 
Query:  132 IPSFEEQKAYKVYMTGMAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMISADPHSAPGST 261
            +P+  E +     +   AVR IE  F+  +LC D F+R +MD  GY+P+A VAN+  VA++G    D+ AG+  S+ LQ+D ENET+R++E WE WL P+   G  G PRY+KV P  +      A GST
Sbjct:  219 VPASNENRTM---LAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSP--VPPTDQDASGST 342
[Close]
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Match: G4ZF40_PHYSP (HTH La-type RNA-binding domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZF40_PHYSP)

HSP 1 Score: 103 bits (258), Expect = 6.720e-22
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 0 
Query:  149 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDITAGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKV 245
            A  QIEFYFT +NL RDIF+R +MD +G++P+AFV +F  V     D   +   +  S+TL++D +NE +R++EGW+ W+ PN A G  GVPRYIKV
Sbjct:  128 AKNQIEFYFTSDNLVRDIFLRQHMDVDGFVPLAFVGSFQAVYSVHQDYASLLEAVKQSETLELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKV 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6542.14397.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI3.280e-7851.25HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA5.570e-3243.37HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA2.660e-2452.04Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K8ZBX0_NANGC2.140e-2348.57Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A2P4X4J6_9STRA1.710e-2241.43La domain family n=1 Tax=Phytophthora palmivora va... [more]
A0A662WMH8_9STRA1.830e-2246.67HTH La-type RNA-binding domain-containing protein ... [more]
V9E4H7_PHYPR3.890e-2245.87HTH La-type RNA-binding domain-containing protein ... [more]
A0A4D9CXU2_9STRA4.520e-2245.69HTH La-type RNA-binding domain-containing protein ... [more]
A0A7R9U3W9_9STRA5.230e-2242.31Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
G4ZF40_PHYSP6.720e-2249.48HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 150..221
e-value: 2.6E-12
score: 56.9
IPR006630La-type HTH domainPFAMPF05383Lacoord: 150..199
e-value: 5.2E-14
score: 52.0
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 139..230
score: 17.588
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 136..227
e-value: 3.0E-18
score: 67.2
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 30..242
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 30..242
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 145..230

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6542contigH-paniculata_contig6542:1645..3935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6542.14397.1mRNA_H-paniculata_contig6542.14397.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6542 125..4011 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6542.14397.1 ID=prot_H-paniculata_contig6542.14397.1|Name=mRNA_H-paniculata_contig6542.14397.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=453bp
MANHGGGGGNSKRASSTPVKWTLVEAEPETPQGQRKQGYARSRGQTSGGR
GGSGSAGNWRSSSRDGGRGRGGGNNFSNGHRGNRRGGGGGGIRSNQGQGR
GRGYANGMGAYVGGATYYVNRDHSNRDYGNGIPSFEEQKAYKVYMTGMAV
RQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVDLPDIT
AGILASDTLQVDIENETMRMKEGWEVWLLPNQATGKQGVPRYIKVGPSMI
SADPHSAPGSTEPQAAYDEAAGPTDAIIELNGQGNQPGVESDANGIEPLV
PPQQEGLPAASTRGKYDQGVSDAKVSSAVVLNDKGQDTEVLTRKDVTKVT
RRKSLTPTAPAWTPSAPVEINMADERKSAGEDLSVAVPPVGSADDWGGLT
KADDNRKSTENPIAHESTIKPPEDESHSDVESPGNDSIGDGDAQATTSKL
IS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf