mRNA_H-paniculata_contig65349.14388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65349.14388.1
Unique NamemRNA_H-paniculata_contig65349.14388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65349.14388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65349contigH-paniculata_contig65349:7..209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930766.3364632-CDS-H-paniculata_contig65349:6..581622930766.3364632-CDS-H-paniculata_contig65349:6..58Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65349 7..58 +
1691481442.7560499-CDS-H-paniculata_contig65349:6..581691481442.7560499-CDS-H-paniculata_contig65349:6..58Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65349 7..58 +
1622930766.377381-CDS-H-paniculata_contig65349:94..2071622930766.377381-CDS-H-paniculata_contig65349:94..207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65349 95..207 +
1691481442.7695303-CDS-H-paniculata_contig65349:94..2071691481442.7695303-CDS-H-paniculata_contig65349:94..207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65349 95..207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65349.14388.1prot_H-paniculata_contig65349.14388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65349 7..207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65349.14388.1

>prot_H-paniculata_contig65349.14388.1 ID=prot_H-paniculata_contig65349.14388.1|Name=mRNA_H-paniculata_contig65349.14388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
PHNAKQLSSHWRRSGNLLQTRAAAAHAAAVGPTHQSKQQIRSFPGHPSGT
QSPGY
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mRNA from alignment at H-paniculata_contig65349:7..209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65349.14388.1 ID=mRNA_H-paniculata_contig65349.14388.1|Name=mRNA_H-paniculata_contig65349.14388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=203bp|location=Sequence derived from alignment at H-paniculata_contig65349:7..209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAACCT
GTTACAGACAATGTCGTCCAACGCTTCTACGATCGGGGTACAGACTCGGG
CGGCAGCCGCTCACGCGGCCGCGGTAGGCCCGACGCATCAGTCCAAGCAA
CAGATTCGGTCCTTCCCAGGACACCCTTCCGGGACGCAGTCTCCGGGGTA
CCT
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Coding sequence (CDS) from alignment at H-paniculata_contig65349:7..209+

>mRNA_H-paniculata_contig65349.14388.1 ID=mRNA_H-paniculata_contig65349.14388.1|Name=mRNA_H-paniculata_contig65349.14388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig65349:7..209+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAACCT
GTCCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAAC
CTGTTACAGACTCGGGCGGCAGCCGCTCACGCGGCCGCGGTAGGCCCGAC
GCATCAGTCCAAGCAACAGATTCGGTCCTTCCCAGGACACCCTTCCGGGA
CGCAGTCTCCGGGGTACTACAGACTCGGGCGGCAGCCGCTCACGCGGCCG
CGGTAGGCCCGACGCATCAGTCCAAGCAACAGATTCGGTCCTTCCCAGGA
CACCCTTCCGGGACGCAGTCTCCGGGGTAC
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