mRNA_H-paniculata_contig12255.1436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12255.1436.1
Unique NamemRNA_H-paniculata_contig12255.1436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12255.1436.1 vs. uniprot
Match: D8LM43_ECTSI (Ankyrin repeat Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM43_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.100e-23
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = -2 
Query:   61 MQQIHSSLGPLVHSTFEMMTDLVRFGALMLVITMGFALCFYALFGSVSASLSEDAQLEEYSSYYTSMLTLFESMLGSFRFDV 306
            + Q+HSSLGPL+HS F ++ DL RFGALMLVIT+GFAL FYA+FGS+SASL +   + EY +YY+S+LTLF SMLG+F F+V
Sbjct:  787 LTQVHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMLGNFSFEV 868
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BLAST of mRNA_H-paniculata_contig12255.1436.1 vs. uniprot
Match: A0A6H5KCQ6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.660e-22
Identity = 54/88 (61.36%), Postives = 69/88 (78.41%), Query Frame = -2 
Query:   61 FITGPRMQQIHSSLGPLVHSTFEMMTDLVRFGALMLVITMGFALCFYALFGSVSASLSEDAQLEEYSSYYTSMLTLFESMLGSFRFDV 324
            F+T  R   +HSSLGPL+HS F ++ DL RFGALMLVIT+GFAL FYA+FGS+SASL +   + EY +YY+S+LTLF SM G+F F+V
Sbjct:  462 FLTQAR---VHSSLGPLMHSAFNVIGDLTRFGALMLVITLGFALAFYAMFGSMSASLPDGGDIAEYDTYYSSILTLFSSMFGNFSFEV 546
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12255.1436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM43_ECTSI2.100e-2364.63Ankyrin repeat Transient receptor potential channe... [more]
A0A6H5KCQ6_9PHAE1.660e-2261.36Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12255contigH-paniculata_contig12255:1276..1975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.4860983-UTR-H-paniculata_contig12255:1275..15941622928947.4860983-UTR-H-paniculata_contig12255:1275..1594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12255 1276..1594 +
1691480677.4878175-UTR-H-paniculata_contig12255:1275..15941691480677.4878175-UTR-H-paniculata_contig12255:1275..1594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12255 1276..1594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.5016444-CDS-H-paniculata_contig12255:1594..19751622928947.5016444-CDS-H-paniculata_contig12255:1594..1975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12255 1595..1975 +
1691480677.5048566-CDS-H-paniculata_contig12255:1594..19751691480677.5048566-CDS-H-paniculata_contig12255:1594..1975Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12255 1595..1975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12255.1436.1prot_H-paniculata_contig12255.1436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12255 1595..1975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12255.1436.1

>prot_H-paniculata_contig12255.1436.1 ID=prot_H-paniculata_contig12255.1436.1|Name=mRNA_H-paniculata_contig12255.1436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MKHCSAVCDSGSRGRRQVCRAGAGTGGAPILREGQPWREIRSWWKFTRSV
RWISGTVVAPVVLRYHGQLTVISWGPRKHPPLLCHMSYFYYMKDVHSWSC
NHRPTHTKDFRDLPLIRIHYYPSPAAQ
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mRNA from alignment at H-paniculata_contig12255:1276..1975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12255.1436.1 ID=mRNA_H-paniculata_contig12255.1436.1|Name=mRNA_H-paniculata_contig12255.1436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=700bp|location=Sequence derived from alignment at H-paniculata_contig12255:1276..1975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCCAACTCGTGGCCCTCCCAAACGACTCTAGCAAACCCTTCGGATTTC
AGTTGAAACTCACGTCAAAGCGGAAACTGCCCAGCATGGACTCGAAAAGT
GTGAGCATCGACGTGTAATAGCTGCTGTATTCCTCGAGTTGTGCATCCTC
GGACAAAGAAGCCGAAACGGAACCGAAAAGGGCGTAAAAGCAAAGAGCGA
ACCCCATGGTGATGACCAGCATCAGGGCGCCGAAACGCACGAGATCCGTC
ATCATTTCGAAGGTTGAGTGGACCAAGGGTCCAAGAGATGAATGAATCTG
TTGCATACGAGGCCCGGTGATGAAACATTGTTCCGCGGTGTGCGATAGCG
GTAGCAGGGGGCGGAGGCAGGTGTGTCGAGCAGGTGCAGGGACGGGGGGC
GCACCTATCTTGAGGGAAGGTCAACCCTGGCGGGAAATCAGAAGCTGGTG
GAAATTCACCCGCTCGGTCCGCTGGATCTCTGGAACTGTGGTAGCGCCGG
TCGTTCTAAGATATCACGGGCAGCTTACAGTCATTTCATGGGGTCCGAGG
AAACACCCCCCTCTCCTTTGTCATATGTCGTACTTCTACTACATGAAAGA
CGTGCACTCTTGGAGCTGTAATCATCGGCCAACCCATACAAAGGATTTCC
GTGATCTCCCGCTTATTAGAATACACTACTACCCCAGCCCAGCAGCGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12255:1276..1975+

>mRNA_H-paniculata_contig12255.1436.1 ID=mRNA_H-paniculata_contig12255.1436.1|Name=mRNA_H-paniculata_contig12255.1436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig12255:1276..1975+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACATTGTTCCGCGGTGTGCGATAGCGGTAGCAGGGGGCGGAGGCA
GGTGTGTCGAGCAGGTGCAGGGACGGGGGGCGCACCTATCTTGAGGGAAG
GTCAACCCTGGCGGGAAATCAGAAGCTGGTGGAAATTCACCCGCTCGGTC
CGCTGGATCTCTGGAACTGTGGTAGCGCCGGTCGTTCTAAGATATCACGG
GCAGCTTACAGTCATTTCATGGGGTCCGAGGAAACACCCCCCTCTCCTTT
GTCATATGTCGTACTTCTACTACATGAAAGACGTGCACTCTTGGAGCTGT
AATCATCGGCCAACCCATACAAAGGATTTCCGTGATCTCCCGCTTATTAG
AATACACTACTACCCCAGCCCAGCAGCGCAGATGAAACATTGTTCCGCGG
TGTGCGATAGCGGTAGCAGGGGGCGGAGGCAGGTGTGTCGAGCAGGTGCA
GGGACGGGGGGCGCACCTATCTTGAGGGAAGGTCAACCCTGGCGGGAAAT
CAGAAGCTGGTGGAAATTCACCCGCTCGGTCCGCTGGATCTCTGGAACTG
TGGTAGCGCCGGTCGTTCTAAGATATCACGGGCAGCTTACAGTCATTTCA
TGGGGTCCGAGGAAACACCCCCCTCTCCTTTGTCATATGTCGTACTTCTA
CTACATGAAAGACGTGCACTCTTGGAGCTGTAATCATCGGCCAACCCATA
CAAAGGATTTCCGTGATCTCCCGCTTATTAGAATACACTACTACCCCAGC
CCAGCAGCGCAG
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