mRNA_H-paniculata_contig65.14337.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig65.14337.1
Unique NamemRNA_H-paniculata_contig65.14337.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: D8LDZ6_ECTSI (Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDZ6_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 4.480e-23
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 PGTVGSTEPGGKVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSKEA 192
            P  VG+ E G   +LKIG+HTGR VGGVSGVKSYSYHLFGDT+NMASRTASTG+ GRVQLSK A
Sbjct:  380 PAAVGAKESGSGAILKIGVHTGRVVGGVSGVKSYSYHLFGDTVNMASRTASTGLPGRVQLSKSA 443
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A6A5BEQ2_NAEFO (Guanylate cyclase domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BEQ2_NAEFO)

HSP 1 Score: 68.9 bits (167), Expect = 4.160e-12
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   22 EPGGKVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            + G K+ L+IGIHTG  VGGV G K ++Y L+GDTIN ASR  STGV GR+QLS+
Sbjct: 1115 DKGKKINLRIGIHTGECVGGVIGHKKFAYDLWGDTINTASRMESTGVPGRIQLSR 1169
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A6A5BH38_NAEFO (Guanylate cyclase domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BH38_NAEFO)

HSP 1 Score: 68.2 bits (165), Expect = 7.790e-12
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   34 KVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            +V ++IGIHTG AVGGV G K +++ L+GDTIN ASR  STGVAGRVQ+S+
Sbjct: 1592 RVNVRIGIHTGAAVGGVIGTKKFAFDLWGDTINTASRMESTGVAGRVQISR 1642
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: UPI001D03E31F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D03E31F)

HSP 1 Score: 67.4 bits (163), Expect = 1.450e-11
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   34 KVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            KV ++IGIHTG AVGGV G K +++ L+GDTIN ASR  STGV GRVQ+S+
Sbjct: 1583 KVNVRIGIHTGAAVGGVIGTKKFAFDLWGDTINTASRMESTGVEGRVQISR 1633
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A225X5F4_9STRA (Phospholipid-transporting ATPase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X5F4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.620e-11
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   37 VVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            + L+IGIH+G  V GV G K+YSYHLFGDT+N +SR  S+G AG++Q+S+
Sbjct:  117 IQLQIGIHSGPVVAGVVGSKTYSYHLFGDTVNTSSRVCSSGCAGKIQISE 166
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: D2W6P9_NAEGR (Predicted protein (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W6P9_NAEGR)

HSP 1 Score: 65.5 bits (158), Expect = 4.230e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   28 GGKVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            G +V L+IG+HTG  VGGV G K ++Y L+GDTIN ASR  STGV GR+Q+S+
Sbjct:  138 GKEVNLRIGMHTGPCVGGVIGTKKFAYDLWGDTINTASRMESTGVPGRIQISR 190
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A6G0XVA9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVA9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.050e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   34 KVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            ++ L+IGIH+G  VGGV G K+YSYHLFGDT+N +SR  S+ + GR+Q+S+
Sbjct:  449 RIRLQIGIHSGPVVGGVIGSKTYSYHLFGDTVNTSSRVCSSSMPGRIQISE 499
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: D2W3A5_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W3A5_NAEGR)

HSP 1 Score: 65.5 bits (158), Expect = 6.930e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   28 GGKVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLSK 186
            G +V L+IG+HTG  VGGV G K ++Y L+GDTIN ASR  STGV GR+Q+S+
Sbjct: 1446 GKEVNLRIGMHTGPCVGGVIGTKKFAYDLWGDTINTASRMESTGVPGRIQISR 1498
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BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A662X4Q3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Q3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 9.440e-11
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   37 VVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLS 183
            + L+IGIH+G  V GV G K+YSYHLFGDT+N +SR  S+G AG++Q+S
Sbjct:  481 IQLQIGIHSGPVVAGVVGCKTYSYHLFGDTVNTSSRVCSSGSAGKIQIS 529
[Close]
BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Match: A0A6A3YD39_9STRA (Guanylate cyclase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YD39_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.280e-10
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:   37 VVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTASTGVAGRVQLS 183
            + L+IGIH+G  V GV G K+YSYHLFGDT+N +SR  S+G AG++Q+S
Sbjct:  483 IQLQIGIHSGPVVAGVVGSKTYSYHLFGDTVNTSSRICSSGCAGKIQIS 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig65.14337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDZ6_ECTSI4.480e-2376.56Guanylyl cyclase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6A5BEQ2_NAEFO4.160e-1261.82Guanylate cyclase domain-containing protein n=1 Ta... [more]
A0A6A5BH38_NAEFO7.790e-1264.71Guanylate cyclase domain-containing protein n=1 Ta... [more]
UPI001D03E31F1.450e-1164.71uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A225X5F4_9STRA1.620e-1158.00Phospholipid-transporting ATPase n=1 Tax=Phytophth... [more]
D2W6P9_NAEGR4.230e-1160.38Predicted protein (Fragment) n=1 Tax=Naegleria gru... [more]
A0A6G0XVA9_9STRA5.050e-1156.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D2W3A5_NAEGR6.930e-1160.38Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A662X4Q3_9STRA9.440e-1159.18Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6A3YD39_9STRA1.280e-1059.18Guanylate cyclase domain-containing protein n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig65contigH-paniculata_contig65:40166..41094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.9e-19
Seed eggNOG ortholog2880.D8LDZ6
KEGG rclassRC00295
KEGG koko:K01530,ko:K01769,ko:K11858
KEGG ReactionR00434
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004016,GO:0004383,GO:0004888,GO:0005034,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006163,GO:0006164,GO:0006171,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007186,GO:0007187,GO:0007188,GO:0007189,GO:0008074,GO:0008150,GO:0008152,GO:0008179,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009268,GO:0009410,GO:0009628,GO:0009653,GO:0009847,GO:0009893,GO:0009975,GO:0009987,GO:0010033,GO:0010243,GO:0010447,GO:0010562,GO:0010604,GO:0014070,GO:0014074,GO:0016020,GO:0016021,GO:0016829,GO:0016849,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0030104,GO:0030145,GO:0030154,GO:0030425,GO:0030435,GO:0031000,GO:0031224,GO:0031226,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031683,GO:0032268,GO:0032270,GO:0032502,GO:0032991,GO:0033554,GO:0033674,GO:0033993,GO:0034641,GO:0034654,GO:0035556,GO:0035690,GO:0036270,GO:0036477,GO:0038023,GO:0042221,GO:0042325,GO:0042327,GO:0042493,GO:0042592,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043167,GO:0043169,GO:0043279,GO:0043549,GO:0043934,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044445,GO:0044459,GO:0044463,GO:0044464,GO:0044877,GO:0045121,GO:0045859,GO:0045860,GO:0045937,GO:0046058,GO:0046068,GO:0046390,GO:0046483,GO:0046677,GO:0046872,GO:0046914,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0052652,GO:0055086,GO:0060089,GO:0060255,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071214,GO:0071236,GO:0071310,GO:0071396,GO:0071407,GO:0071470,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0097305,GO:0097306,GO:0097447,GO:0097458,GO:0098589,GO:0098805,GO:0098857,GO:0104004,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901698,GO:1901700,GO:1901701,GO:1904321,GO:1904322,GO:1904359,GO:1904360,GO:2000479,GO:2000481
EggNOG free text desc.guanylate cyclase activity
EggNOG OGsCOG2114@1,KOG1023@2759,KOG4171@2759
EC3.4.19.12,3.6.3.1,4.6.1.2
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons3
Model size194
Cds size192
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig65.14337.1prot_H-paniculata_contig65.14337.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig65 40167..41094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930759.7229102-CDS-H-paniculata_contig65:40166..402101622930759.7229102-CDS-H-paniculata_contig65:40166..40210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 40167..40210 -
1691481439.6801507-CDS-H-paniculata_contig65:40166..402101691481439.6801507-CDS-H-paniculata_contig65:40166..40210Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 40167..40210 -
1622930759.7378654-CDS-H-paniculata_contig65:40808..408881622930759.7378654-CDS-H-paniculata_contig65:40808..40888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 40809..40888 -
1691481439.692749-CDS-H-paniculata_contig65:40808..408881691481439.692749-CDS-H-paniculata_contig65:40808..40888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 40809..40888 -
1622930759.7511723-CDS-H-paniculata_contig65:41026..410941622930759.7511723-CDS-H-paniculata_contig65:41026..41094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 41027..41094 -
1691481439.7082863-CDS-H-paniculata_contig65:41026..410941691481439.7082863-CDS-H-paniculata_contig65:41026..41094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig65 41027..41094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig65.14337.1

>prot_H-paniculata_contig65.14337.1 ID=prot_H-paniculata_contig65.14337.1|Name=mRNA_H-paniculata_contig65.14337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
PGTVGSTEPGGKVVLKIGIHTGRAVGGVSGVKSYSYHLFGDTINMASRTA
STGVAGRVQLSKEA
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mRNA from alignment at H-paniculata_contig65:40166..41094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig65.14337.1 ID=mRNA_H-paniculata_contig65.14337.1|Name=mRNA_H-paniculata_contig65.14337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=929bp|location=Sequence derived from alignment at H-paniculata_contig65:40166..41094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGGCACAGTCGGATCAACAGAGCCAGGCGGCAAAGTGGTCCTGAAGAT
AGGGATACATACCGGCAGGTACATGCGGTTGGTGCTCGCGCAGCCTACCG
TGTGAATCGAACTCTTAAGTCCACCGAAACTACCCTTTCTCAATGAATTT
GAAACCCGTACTAGCAATATGTTTCAATGCATCCTTCTTCCATTCCTATA
AACCAGGGCTGTCGGCGGCGTGTCCGGGGTAAAGTCATACAGCTACCACC
TCTTTGGAGACACCATTAACATGGCCTCGAGAACAGGTACGCAGTAGCAA
TGGGAGCAGTTTCTTCTCCTGGAGCGAGAAGGGCGCCTATCACAAAGCGG
TTTTTGGGCTCGGATGAATCATGTTGGCCGAGCAGTTCCCGTGGTAAACA
AACCGCCCTAACCTATCCTCCTGAGTCTAGGTTAGAGACGGGCACCGACT
AAGAAAATCGAGCACCGTGGGACCGAGATGCCCCCAAGTCGGTTAAAGCA
ATCGTCGGTGAGCGAACGTTTGTTTTGAACCCACAAGCTTCAGTCGAAAT
ACGGTTTACTCATGAGCGTTAACAGCGATCTATTCACAACACTGCAGGTA
ATGGGCGACGAAACACTTTCCCCGTGAAACGAAAGTTATCCCCTCAGCGT
CGTCCACGGTCGGTTGCACGACGCCAGGAAACACATGAGCTACCGCACCC
TTCGCTATTCCGTCTTCTCGAGTACGTATCGTTGATCGCCTAGTGGCGGC
AACGGTTTGATGAAGAAGGCACGCAACACATGAGAACATCCCTCGATTTC
CCCCTCCCGCCTCGCCGCTTTTCCCTTAACCGTTTTCCCATACACCCCGT
CACTTCCTCCAACCTACGGTCTGTTCACCCACAGCCTCGACCGGCGTAGC
AGGTCGAGTGCAGCTGAGCAAGGAAGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig65:40166..41094-

>mRNA_H-paniculata_contig65.14337.1 ID=mRNA_H-paniculata_contig65.14337.1|Name=mRNA_H-paniculata_contig65.14337.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig65:40166..41094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGGCACAGTCGGATCAACAGAGCCAGGCGGCAAAGTGGTCCTGAAGAT
AGGGATACATACCGGCAGCCTGGCACAGTCGGATCAACAGAGCCAGGCGG
CAAAGTGGTCCTGAAGATAGGGATACATACCGGCAGGGCTGTCGGCGGCG
TGTCCGGGGTAAAGTCATACAGCTACCACCTCTTTGGAGACACCATTAAC
ATGGCCTCGAGAACAGGGCTGTCGGCGGCGTGTCCGGGGTAAAGTCATAC
AGCTACCACCTCTTTGGAGACACCATTAACATGGCCTCGAGAACAGCCTC
GACCGGCGTAGCAGGTCGAGTGCAGCTGAGCAAGGAAGCCCCTCGACCGG
CGTAGCAGGTCGAGTGCAGCTGAGCAAGGAAGCC
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