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Homology
BLAST of mRNA_H-paniculata_contig12249.1431.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE) HSP 1 Score: 517 bits (1332), Expect = 3.230e-173 Identity = 310/632 (49.05%), Postives = 397/632 (62.82%), Query Frame = 1
Query: 1 LPQLNDGDLALLDDAIAILNPSVTQVRVVEVDTFTESEHSIVRGDVDLSKGQYALSQKAIILERKATSADLAPAADSKVGDIESGVEMLGAAPGSTVAPAAGIAAGV-EGEKGETPRND---IPEIFLFWARNRRRGGNLIVCPNVNAIDRLVQAYLVCEVVECSFQTTRGSGSGRSNGT----GGLLGVELGEALPSEQDELQGLLSNYSFTDASLGVVALAASVYYFGVKGENDVNVLTLLAVAVVAGLNQEATWPWVFNLILNCSQIRDPMVKVTQCKRVHNHTGQTSGQGVLTIGLAVFGVWIEVFNQHFQQDEQTPIIFRILLNGFQVAMMVVIVVNMVQAVSPMVTKVKRIQNVLHPWAVVMLEETVVDTVWYLTLLVGLIWVGVIAAVASALFAGDPEM--STAWRIFTIVAVVLAASTITINPGMFVLAIWGLVWLIPTALAFVSRTAFDLLTRLMNRMSIGLRGMVREWHSHVRKNTAGSCGVGGFLLLVLQVVPMTPLLLLFLPLPLGYLMCWMLHILLRALLVLSDAIIWPVSPFCLYPLLSDPGSVTWRMAALDMDVERRSMRTMLKRRVSTLLEM--GKLGKLVRMNVFPQTFKPYSHLRCSQTPRLGCATILLELDEE 1860
+P L + DL LLD+AI++LNP VRVVEVDTFTESE SIV+G + G ++L Q I +R A+ + L A + D ES E AP AA A V E +K E +PEI LFW RN RRGGNLIVCP +++DRL+QAYLVCEVV+ S + S R T GGL+GVELGE +EQD L+ L+S+YSF DAS+G+++L AS+YYF V N VNVLTLLAVAVVAGLNQEATWPWVF IL C++++DP+V+V+QC+ V +H GQ SGQG L IGLA FGV++EVF D TP++FRILLNGFQ AM+ V+VVNMVQAV PM ++ L PWA L++ V DT WYLTLLVG++W G V +F G + I I +VL S +NPGM +L WG +WL+P LAFV R+AFD L+N++S+ R M E SH R + G V L +LQV+P+TPL L+ LP+PL Y W +H+ +R LL ++DA+ P F L+P+LSD GSVTW+M L MDVE RSMRT+L R+ L+E LG+ R V P +PY HL + RLGC + + EE
Sbjct: 34 MPHLEERDLKLLDEAISLLNPPEAHVRVVEVDTFTESERSIVKGSARIGHGDFSLRQMTAIFKR-ASPSGLGIAELTATNDDESKAEESDVAPEDLTPEAAAAALRVSERDKEEEAMKKPPKLPEIILFWGRNMRRGGNLIVCPGESSMDRLIQAYLVCEVVQDSKLFDKSVTSFRERVTTERKGGLMGVELGETSTAEQDALENLISDYSFHDASIGIISLVASIYYFFVLARNHVNVLTLLAVAVVAGLNQEATWPWVFKHILLCARMKDPIVRVSQCRLVRHHQGQLSGQGFLAIGLAAFGVYLEVFPT---TDGDTPLLFRILLNGFQAAMVAVLVVNMVQAVEPMDMSRVSPKDRLRPWARKYLDDNVFDTKWYLTLLVGVLWSG---GVTVTIFVGVSHEFEGLGYTIPVICLIVLGLSIAAVNPGMALLGAWGFIWLVPVGLAFVCRSAFDTALMLINKVSLTWRRMANEVVSHARDSARGEFSVRDILKFLLQVLPLTPLFLVSLPIPLLYFFVWFIHLSMRVLLRVADALSAPALDFRLHPILSDYGSVTWKMDRLSMDVENRSMRTLLMARIDKLMESTSATLGERSRSGVIPS--RPYWHLSKTSANRLGCIAVKIGTGEE 656
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1860 |
| Cds size | 1860 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12249.1431.1 >prot_H-paniculata_contig12249.1431.1 ID=prot_H-paniculata_contig12249.1431.1|Name=mRNA_H-paniculata_contig12249.1431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=620bp
LPQLNDGDLALLDDAIAILNPSVTQVRVVEVDTFTESEHSIVRGDVDLSK
GQYALSQKAIILERKATSADLAPAADSKVGDIESGVEMLGAAPGSTVAPA
AGIAAGVEGEKGETPRNDIPEIFLFWARNRRRGGNLIVCPNVNAIDRLVQ
AYLVCEVVECSFQTTRGSGSGRSNGTGGLLGVELGEALPSEQDELQGLLS
NYSFTDASLGVVALAASVYYFGVKGENDVNVLTLLAVAVVAGLNQEATWP
WVFNLILNCSQIRDPMVKVTQCKRVHNHTGQTSGQGVLTIGLAVFGVWIE
VFNQHFQQDEQTPIIFRILLNGFQVAMMVVIVVNMVQAVSPMVTKVKRIQ
NVLHPWAVVMLEETVVDTVWYLTLLVGLIWVGVIAAVASALFAGDPEMST
AWRIFTIVAVVLAASTITINPGMFVLAIWGLVWLIPTALAFVSRTAFDLL
TRLMNRMSIGLRGMVREWHSHVRKNTAGSCGVGGFLLLVLQVVPMTPLLL
LFLPLPLGYLMCWMLHILLRALLVLSDAIIWPVSPFCLYPLLSDPGSVTW
RMAALDMDVERRSMRTMLKRRVSTLLEMGKLGKLVRMNVFPQTFKPYSHL
RCSQTPRLGCATILLELDEE back to topmRNA from alignment at H-paniculata_contig12249:167..4063- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12249.1431.1 ID=mRNA_H-paniculata_contig12249.1431.1|Name=mRNA_H-paniculata_contig12249.1431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3897bp|location=Sequence derived from alignment at H-paniculata_contig12249:167..4063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCGCAGTTGAACGACGGTGATCTTGCGCTTCTAGACGACGCCATCGC
GATATTGAATCCGTCCGTGACTCAAGTGCGGGTAGTGGAGGTCGACACGT
TTACGGTGAGAAAGAAAAGAGAGCACAGGACTTGTTTAACCCGTCGGGAG
CGTATGACCCATACATTAATCAGCTGTCGAGTGCTTCTTCCATCACCTGG
CCGTTACGAAAAGAGTGGGTGTTAGCCCTTTCTCCCTCGACTCGAAATCC
AAGATGAAAGCCCCCCCAACGACTTGAAAATCGACCGCCGTTTGCACCTG
ACATGCACTTTTAACAATCCAATTGCCCAAAGCTGGTTAAATAATGTGTT
GACGTATTTCGTCGTTATTTTCAAGCGTGGTCGTGTTAGCAAATCTATCT
TTTGGCCGTCGACAAGCGTTCAACGTCACATTCCGTGTGAAATCCACGAT
GGTTCCCAAATATTAACTCAATACGCAAGGTGATTGCGTCAGGCTGCCAG
CGGACTTGAATCGTTTACACGCTGAAAAAAAATGCCTCGTTTGTAGCAAG
CAGCCGTCATCAGGATAGATAGCGTCTCCGTCCCGACATGCATTATTTCC
AATATACACATCCTTACAACACACTTGTATGTTTCCGTCAATAGTCTCTC
TCTCTCTATATGCATGGTTCTATAAACTGAATGGCCTCAAGGCTGAAAAC
TTTTGCAGCGTCCTTCACCTTCTGTTTTATACATATGTTCGCTCTCTTTT
TTTCGTGGATGGCAGGAAAGCGAGCACTCTATAGTAAGGGGAGACGTGGA
CCTTTCCAAGGGCCAGTACGCGTTATCGCAAAAGGCGATCATCCTGGAAA
GGAGTGCAAGGAAAATTTTTTCGTCGACCCAGCAGCAGCAGACATCACCC
GCCACCACAGACCCTGGCGCTGTACAACTACCACTGTTGAAAACAATGGC
GAAGGCCGACGCCTCACTCGTTCCAGCATCATCAGCAACAGAGCCAATGA
AAACAGTAGAGGCTACTTCCGCTGACCTCGCACCAGCAGCCGACTCAAAA
GTCGGCGATATCGAGTCCGGGGTGGAAATGCTTGGTGCTGCGCCGGGTAG
CACGGTGGCACCTGCGGCCGGCATAGCAGCCGGGGTCGAGGGGGAGAAGG
GAGAGACGCCTCGGAACGACATCCCTGAAATATTTTTGTTCTGGGCGAGG
AACCGGAGACGCGGGGGAAACCTCATCGTGTGTCCAAACGTGAACGCCAT
CGATCGGCTGGTGCAGGCTTACCTGGTGTGCGAGGTCGTAGAGTGCAGCT
TTCAAACGTGAGTTTGTGTATTGTCGTTTGGTTGGTGGTGTGCGGTGAAT
TCTTGTTCTTGTTTGGGTTTCTGGAGGTGACGAGGGATGAGAGCATTGAG
AATGGCCTAGCGGCAAGTAGGGGGAGTGACTAGCAGGCGTGTTGGAGGGG
TTGGGGGGGTACTAACGCACATGAAATAACTTAGTTGTATGCACTCATTA
GCAAAATGAGATAAAAAAAGAGGACAAGGTTTCACCCCCCTGGACAAATA
CGAATACTTGCATGTGATTTTCACCAAAAACTGGAAGTATTCGACTGAGA
TTCACAATGAGCGGACACATGAAATAAACCACCCACCCCTGCCCATTCGA
TTTACGAGTATTATTAGCAGTCGTGGATGGTCCGGGGCACATGGAATACA
CAGCTCATTCTGAGTCTCAGGTAAATACTTCCAGTTTTTCTGTGAAAACC
ATTTGCAAGTATTCGTATTTGTCCGGGGGGGTTCAAGGTTTACGCCGCCC
ACATTTATATTGTCCCACGTGTTATGGCTGTTCTTGATGAATGTAAACTG
AACCTTGTCTCTTCTTTTTTCCCCTCTTTTTTCCTATTCACTTTCGTCGT
CGTTGGCACCCCGGTCCCTGCCCCGTGGAACAACGAACAGTGCCAGCACC
CGTGGCAGCGGCAGCGGCAGGAGCAATGGCACGGGGGGGTTGCTGGGCGT
GGAGCTAGGAGAAGCTCTGCCCTCCGAGCAGGACGAGCTACAAGGCTTGC
TGAGCAATTACAGCTTCACGGATGCCTCTCTCGGCGTCGTGGCCTTGGCG
GCCAGCGTTTACTACTTTGGAGTGAAGGGCGAAAACGATGTAAACGTTTT
GACGCTGTTGGCGGTGGCTGTGGTGGCGGGCTTGAACCAGGAGGTTGGTG
TATGTCAAGTTACCGAAAAAGCTCTTCTCTGTGATCACTGCTTTATTTCA
TCTGTAGTCTGGTAATAATCAATATCTCCCGTGTTGTGTTAGGGTGTACA
CATAGCGTGTGGCAACATATATATATATATATATATAATAATTTTTTTGT
GTGTGCGTGTTTTTCCGGAGCTATATTCTTTTTGTTTTTGTATAAAATTT
CGACAAAGGATGTTTGCTCGGGAGAGTGAGAAAACCCGTGCTATCGCTAA
ATGTGATAAGACAAGCGCTCGCTGGGTCCATCTTGGCTGAAAACAACTTA
TTCCCCCTTCCCCCGGATGTTCATCGATGCGTGCAAAAATGTGTATCGTC
GAAAAAAGAAAGCGTCCGCGCCTTTTCTAGCTGACGTACGTCCCGTCCTC
ATAGGCTTTAAGAGCTTGTGAAACCGCCATCGCATGCATCTCAACTTTAC
ACACACATACACACATCAAGGCTCACTCCTCCCCCCCCTCCCCATCGCCC
CTCCCCACCCCGCCCTTACCATACCGGTCGACCAATCGACATCCCCTTTT
TTTTATCTCGGCCGCCGCGCACCAGGCAACGTGGCCGTGGGTGTTCAATC
TCATCCTCAATTGCTCGCAGATCCGAGACCCCATGGTGAAGGTGACCCAG
TGCAAGCGTGTGCACAACCACACGGGGCAGACGTCGGGGCAAGGTGTGCT
GACGATCGGACTGGCGGTGTTCGGCGTGTGGATTGAGGTGTTCAACCAGC
ATTTTCAGCAGGACGAGCAAACCCCCATTATCTTCCGGATCCTGCTTAAC
GGCTTCCAGGTGGCCATGATGGTGGTTATCGTGGTGAACATGGTGCAGGC
GGTGTCTCCCATGGTGACCAAGGTGAAACGGATCCAAAACGTTCTGCACC
CCTGGGCGGTCGTCATGCTGGAAGAAACCGTGGTGGATACCGTCTGGTAC
CTGACGCTGCTGGTGGGCCTGATCTGGGTCGGTGTCATAGCGGCCGTCGC
GAGCGCGCTGTTCGCCGGGGACCCTGAAATGTCGACGGCTTGGCGCATCT
TTACGATTGTCGCCGTCGTGTTGGCGGCCTCGACCATCACCATTAACCCC
GGGATGTTCGTGCTCGCCATCTGGGGGCTAGTGTGGCTGATTCCCACCGC
CTTGGCTTTCGTCTCTCGGACCGCGTTCGACCTCCTCACGAGATTGATGA
ACCGCATGTCGATCGGCTTGCGGGGCATGGTTCGTGAGTGGCACTCCCAC
GTGCGGAAGAATACTGCGGGCAGCTGCGGCGTTGGGGGATTCCTGCTGCT
GGTCCTTCAGGTGGTGCCGATGACCCCCCTGCTCCTGTTATTCCTTCCGC
TGCCTCTGGGGTACCTCATGTGCTGGATGTTGCACATACTATTGAGGGCG
CTCCTGGTGCTGAGCGACGCGATCATCTGGCCCGTAAGTCCCTTCTGTCT
GTACCCCTTGTTGAGCGACCCGGGCTCGGTCACCTGGCGGATGGCCGCGC
TAGACATGGACGTGGAGCGCAGGTCGATGAGGACCATGCTCAAGAGGCGC
GTGTCTACTCTGTTGGAGATGGGGAAGCTCGGGAAGCTCGTGAGGATGAA
CGTGTTCCCTCAGACGTTCAAGCCGTACAGCCATCTGAGATGTTCTCAAA
CCCCGAGGCTTGGATGTGCCACGATCTTGCTTGAGCTCGATGAGGAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig12249:167..4063- >mRNA_H-paniculata_contig12249.1431.1 ID=mRNA_H-paniculata_contig12249.1431.1|Name=mRNA_H-paniculata_contig12249.1431.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3720bp|location=Sequence derived from alignment at H-paniculata_contig12249:167..4063- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCGCAGTTGAACGACGGTGATCTTGCGCTTCTAGACGACGCCATCGC
GATATTGAATCCGTCCGTGACTCAAGTGCGGGTAGTGGAGGTCGACACGT
TTACGCTGCCGCAGTTGAACGACGGTGATCTTGCGCTTCTAGACGACGCC
ATCGCGATATTGAATCCGTCCGTGACTCAAGTGCGGGTAGTGGAGGTCGA
CACGTTTACGGAAAGCGAGCACTCTATAGTAAGGGGAGACGTGGACCTTT
CCAAGGGCCAGTACGCGTTATCGCAAAAGGCGATCATCCTGGAAAGGAGA
AAGCGAGCACTCTATAGTAAGGGGAGACGTGGACCTTTCCAAGGGCCAGT
ACGCGTTATCGCAAAAGGCGATCATCCTGGAAAGGAAGGCTACTTCCGCT
GACCTCGCACCAGCAGCCGACTCAAAAGTCGGCGATATCGAGTCCGGGGT
GGAAATGCTTGGTGCTGCGCCGGGTAGCACGGTGGCACCTGCGGCCGGCA
TAGCAGCCGGGGTCGAGGGGGAGAAGGGAGAGACGCCTCGGAACGACATC
CCTGAAATATTTTTGTTCTGGGCGAGGAACCGGAGACGCGGGGGAAACCT
CATCGTGTGTCCAAACGTGAACGCCATCGATCGGCTGGTGCAGGCTTACC
TGGTGTGCGAGGTCGTAGAGTGCAGCTTTCAAACAGGCTACTTCCGCTGA
CCTCGCACCAGCAGCCGACTCAAAAGTCGGCGATATCGAGTCCGGGGTGG
AAATGCTTGGTGCTGCGCCGGGTAGCACGGTGGCACCTGCGGCCGGCATA
GCAGCCGGGGTCGAGGGGGAGAAGGGAGAGACGCCTCGGAACGACATCCC
TGAAATATTTTTGTTCTGGGCGAGGAACCGGAGACGCGGGGGAAACCTCA
TCGTGTGTCCAAACGTGAACGCCATCGATCGGCTGGTGCAGGCTTACCTG
GTGTGCGAGGTCGTAGAGTGCAGCTTTCAAACCACCCGTGGCAGCGGCAG
CGGCAGGAGCAATGGCACGGGGGGGTTGCTGGGCGTGGAGCTAGGAGAAG
CTCTGCCCTCCGAGCAGGACGAGCTACAAGGCTTGCTGAGCAATTACAGC
TTCACGGATGCCTCTCTCGGCGTCGTGGCCTTGGCGGCCAGCGTTTACTA
CTTTGGAGTGAAGGGCGAAAACGATGTAAACGTTTTGACGCTGTTGGCGG
TGGCTGTGGTGGCGGGCTTGAACCAGGAGCACCCGTGGCAGCGGCAGCGG
CAGGAGCAATGGCACGGGGGGGTTGCTGGGCGTGGAGCTAGGAGAAGCTC
TGCCCTCCGAGCAGGACGAGCTACAAGGCTTGCTGAGCAATTACAGCTTC
ACGGATGCCTCTCTCGGCGTCGTGGCCTTGGCGGCCAGCGTTTACTACTT
TGGAGTGAAGGGCGAAAACGATGTAAACGTTTTGACGCTGTTGGCGGTGG
CTGTGGTGGCGGGCTTGAACCAGGAGGCAACGTGGCCGTGGGTGTTCAAT
CTCATCCTCAATTGCTCGCAGATCCGAGACCCCATGGTGAAGGTGACCCA
GTGCAAGCGTGTGCACAACCACACGGGGCAGACGTCGGGGCAAGGTGTGC
TGACGATCGGACTGGCGGTGTTCGGCGTGTGGATTGAGGTGTTCAACCAG
CATTTTCAGCAGGACGAGCAAACCCCCATTATCTTCCGGATCCTGCTTAA
CGGCTTCCAGGTGGCCATGATGGTGGTTATCGTGGTGAACATGGTGCAGG
CGGTGTCTCCCATGGTGACCAAGGTGAAACGGATCCAAAACGTTCTGCAC
CCCTGGGCGGTCGTCATGCTGGAAGAAACCGTGGTGGATACCGTCTGGTA
CCTGACGCTGCTGGTGGGCCTGATCTGGGTCGGTGTCATAGCGGCCGTCG
CGAGCGCGCTGTTCGCCGGGGACCCTGAAATGTCGACGGCTTGGCGCATC
TTTACGATTGTCGCCGTCGTGTTGGCGGCCTCGACCATCACCATTAACCC
CGGGATGTTCGTGCTCGCCATCTGGGGGCTAGTGTGGCTGATTCCCACCG
CCTTGGCTTTCGTCTCTCGGACCGCGTTCGACCTCCTCACGAGATTGATG
AACCGCATGTCGATCGGCTTGCGGGGCATGGTTCGTGAGTGGCACTCCCA
CGTGCGGAAGAATACTGCGGGCAGCTGCGGCGTTGGGGGATTCCTGCTGC
TGGTCCTTCAGGTGGTGCCGATGACCCCCCTGCTCCTGTTATTCCTTCCG
CTGCCTCTGGGGTACCTCATGTGCTGGATGTTGCACATACTATTGAGGGC
GCTCCTGGTGCTGAGCGACGCGATCATCTGGCCCGTAAGTCCCTTCTGTC
TGTACCCCTTGTTGAGCGACCCGGGCTCGGTCACCTGGCGGATGGCCGCG
CTAGACATGGACGTGGAGCGCAGGTCGATGAGGACCATGCTCAAGAGGCG
CGTGTCTACTCTGTTGGAGATGGGGAAGCTCGGGAAGCTCGTGAGGATGA
ACGTGTTCCCTCAGACGTTCAAGCCGTACAGCCATCTGAGATGTTCTCAA
ACCCCGAGGCTTGGATGTGCCACGATCTTGCTTGAGCTCGATGAGGAAGC
AACGTGGCCGTGGGTGTTCAATCTCATCCTCAATTGCTCGCAGATCCGAG
ACCCCATGGTGAAGGTGACCCAGTGCAAGCGTGTGCACAACCACACGGGG
CAGACGTCGGGGCAAGGTGTGCTGACGATCGGACTGGCGGTGTTCGGCGT
GTGGATTGAGGTGTTCAACCAGCATTTTCAGCAGGACGAGCAAACCCCCA
TTATCTTCCGGATCCTGCTTAACGGCTTCCAGGTGGCCATGATGGTGGTT
ATCGTGGTGAACATGGTGCAGGCGGTGTCTCCCATGGTGACCAAGGTGAA
ACGGATCCAAAACGTTCTGCACCCCTGGGCGGTCGTCATGCTGGAAGAAA
CCGTGGTGGATACCGTCTGGTACCTGACGCTGCTGGTGGGCCTGATCTGG
GTCGGTGTCATAGCGGCCGTCGCGAGCGCGCTGTTCGCCGGGGACCCTGA
AATGTCGACGGCTTGGCGCATCTTTACGATTGTCGCCGTCGTGTTGGCGG
CCTCGACCATCACCATTAACCCCGGGATGTTCGTGCTCGCCATCTGGGGG
CTAGTGTGGCTGATTCCCACCGCCTTGGCTTTCGTCTCTCGGACCGCGTT
CGACCTCCTCACGAGATTGATGAACCGCATGTCGATCGGCTTGCGGGGCA
TGGTTCGTGAGTGGCACTCCCACGTGCGGAAGAATACTGCGGGCAGCTGC
GGCGTTGGGGGATTCCTGCTGCTGGTCCTTCAGGTGGTGCCGATGACCCC
CCTGCTCCTGTTATTCCTTCCGCTGCCTCTGGGGTACCTCATGTGCTGGA
TGTTGCACATACTATTGAGGGCGCTCCTGGTGCTGAGCGACGCGATCATC
TGGCCCGTAAGTCCCTTCTGTCTGTACCCCTTGTTGAGCGACCCGGGCTC
GGTCACCTGGCGGATGGCCGCGCTAGACATGGACGTGGAGCGCAGGTCGA
TGAGGACCATGCTCAAGAGGCGCGTGTCTACTCTGTTGGAGATGGGGAAG
CTCGGGAAGCTCGTGAGGATGAACGTGTTCCCTCAGACGTTCAAGCCGTA
CAGCCATCTGAGATGTTCTCAAACCCCGAGGCTTGGATGTGCCACGATCT
TGCTTGAGCTCGATGAGGAA back to top
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