mRNA_H-paniculata_contig6478.14303.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6478.14303.1
Unique NamemRNA_H-paniculata_contig6478.14303.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 1.520e-69
Identity = 110/123 (89.43%), Postives = 116/123 (94.31%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            NKSLLSLKLDYNPSLGSEG  ALCRGLRTNS+LKQLHLPYC+LG+DAGAPLGEMLSY KLQLAVLNLQGNRLEA GTKAL+PGLARNRS+VYLSLADNGIGSG+AD  ALEDFRDAMMSC TL
Sbjct:  154 NKSLLSLKLDYNPSLGSEGTAALCRGLRTNSSLKQLHLPYCDLGSDAGAPLGEMLSYTKLQLAVLNLQGNRLEAEGTKALSPGLARNRSLVYLSLADNGIGSGDADVDALEDFRDAMMSCSTL 276          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.040e-52
Identity = 91/123 (73.98%), Postives = 101/123 (82.11%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            N+SLLSLKLDYN +LGSEGA ALCRGLRTN+TL+QLHLPYC +G DAGA LGEMLSY+KLQLAVLNLQGNRL   G + LAPGLARN SV YLSLADN IG    D  AL  FRDA+++C TL
Sbjct:  153 NRSLLSLKLDYNQTLGSEGARALCRGLRTNATLRQLHLPYCGVGGDAGAALGEMLSYSKLQLAVLNLQGNRLGGEGLRDLAPGLARNGSVTYLSLADNAIGGVARDVEALALFRDAILACTTL 275          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 9.960e-36
Identity = 67/117 (57.26%), Postives = 82/117 (70.09%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAM 351
            N+SLL+LKLDYN SLGS+G  ALC+GLRTN++LKQLHL YC L  DAGAPLGE+LSYAK  L  L+LQGN++   G   +  G+  N  + YLSLADN I + + D  ALE     M
Sbjct:  155 NRSLLTLKLDYNSSLGSDGCKALCQGLRTNASLKQLHLCYCGLDEDAGAPLGEVLSYAKTTLQKLHLQGNKMRGGGLSGILSGMDNNNKLEYLSLADNAIAATDEDLEALEQLAGVM 271          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A7S1XUG2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUG2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.430e-27
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEA-ALEDFRDAMMSCPTL 369
            N SLL+LKL+ N +LGS G  ALCRGLR+NS LKQLHL +CN+G D G PL E LSY++  L VL ++GNRL   G + LA G+  N+S+  L ++DN I     +E   L  F  A+ +  TL
Sbjct:  407 NMSLLTLKLNCNLNLGSAGVAALCRGLRSNSVLKQLHLEFCNIGPDGGGPLAEALSYSRTALQVLCMKGNRLGNVGLRDLATGIQLNQSLTTLDVSDNAINGYTFEEIDCLAAFAQAVKASTTL 530          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.840e-25
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            N SLL+LKLDYN +LG EG   LC+GLRTN+TLKQLHL +CNL + +G  L E+L+ ++  L V N+ GNRL   G  +L  GL  N     + LADN I   E D   L   ++ +++ PTL
Sbjct:  156 NLSLLTLKLDYNATLGDEGVINLCKGLRTNATLKQLHLQFCNLSSASGPALSEVLANSRSGLEVFNIGGNRLGGQGLASLCVGLMHNTKCETICLADNMIDQMEDDIIGLTALKECLLN-PTL 277          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A024UFZ4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFZ4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 6.190e-25
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = 1
Query:   10 LLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            L +LKL+ N  +G++G  ALC+GL  N T+KQLHL +CN+ +D G  L ++L  AK  L  L+LQGN L  AG   ++ GL R++S+V L+++DNGI     D  AL  FRDA++ C TL
Sbjct:  156 LQTLKLNCNNKIGNDGVYALCQGLFANHTIKQLHLDFCNVSSDGGVVLAQLLCMAKSALETLSLQGNMLGDAGLLNISKGLKRSQSLVKLNVSDNGI---RKDVDALTTFRDAILRCKTL 272          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A7S2SFQ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFQ2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.160e-25
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   82 RTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            RTNSTLKQLHLP+CN+  D GAP+G+ML+++KL L +LNL+GN L  AG   L PGL+R  S+  LSLADN IGS   D   L  F + +M+  TL
Sbjct:  188 RTNSTLKQLHLPFCNIDADGGAPIGDMLAFSKLGLTLLNLRGNYLGDAGLGNLCPGLSRTASLTELSLADNSIGSNPDDLEPLRMFSETLMTSTTL 283          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH)

HSP 1 Score: 103 bits (257), Expect = 2.710e-24
Identity = 58/120 (48.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:    1 NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAP-GLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMS 357
            N SLL+LKLDYN +LG +G  ALCRGLRTN +L+QLHL +CNL + +G  L ++L+ ++  L VLN+ GNRL   G   L   GL  N     L+L+DN I   E D A L   RD +M+
Sbjct:  116 NISLLTLKLDYNQTLGDDGLVALCRGLRTNMSLRQLHLQFCNLTSASGHALADLLANSRSALEVLNVAGNRLTGQGVYVLCTKGLVVNTKCETLNLSDNLIDQLEEDLAGLTALRDCLMT 235          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A485LQC0_9STRA (Aste57867_24124 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQC0_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.260e-24
Identity = 57/120 (47.50%), Postives = 78/120 (65.00%), Query Frame = 1
Query:   10 LLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMMSCPTL 369
            L +LKL+ N  +G +G  ALC+GL TN+T+KQLHL +C + +     L ++LS AK  L  L+LQGN L   G   L+ GL R+ S+V L+L+DNGI     D AAL  FRDA+++C TL
Sbjct:  160 LQALKLNCNSKIGDDGVAALCQGLFTNTTIKQLHLEFCKITSAGTIVLAQLLSMAKSGLQSLSLQGNLLGDEGLLHLSKGLKRSHSLVKLNLSDNGI---RKDVAALTAFRDAIVACKTL 276          
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.680e-22
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   76 GLRTNSTLKQLHLPYCNLGTDAGAPLGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGIGSGEADEAALEDFRDAMM 354
            GLRTNS+LKQLHLPYCNL +  G PL EMLSY +L L +LNL+GN++   G   L PGL +++S+V L L+DN IG  E D  AL  F  A+M
Sbjct:  217 GLRTNSSLKQLHLPYCNLDSAVGQPLSEMLSYTRLGLTMLNLKGNQIRGQGLLELCPGLEKSKSLVDLDLSDNDIG--EQDIEALNAFAVALM 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6478.14303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FZR4_ECTSI1.520e-6989.43Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YWH7_9STRA1.040e-5273.98Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A8J2X6V8_9STRA9.960e-3657.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XUG2_9STRA7.430e-2749.19Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HG08_9STRA4.840e-2547.15Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024UFZ4_9STRA6.190e-2546.67Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2SFQ2_9STRA7.160e-2555.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482S5Z2_9ARCH2.710e-2448.33Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A485LQC0_9STRA9.260e-2447.50Aste57867_24124 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S2G5E5_9STRA2.680e-2255.91Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6478contigH-paniculata_contig6478:6627..7821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.1
Seed ortholog evalue2.9e-55
Seed eggNOG ortholog2880.D7FZR4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_004060.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930755.0603755-CDS-H-paniculata_contig6478:6626..67911622930755.0603755-CDS-H-paniculata_contig6478:6626..6791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6478 6627..6791 -
1691481437.7690363-CDS-H-paniculata_contig6478:6626..67911691481437.7690363-CDS-H-paniculata_contig6478:6626..6791Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6478 6627..6791 -
1622930755.0786173-CDS-H-paniculata_contig6478:7617..78211622930755.0786173-CDS-H-paniculata_contig6478:7617..7821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6478 7618..7821 -
1691481437.7809412-CDS-H-paniculata_contig6478:7617..78211691481437.7809412-CDS-H-paniculata_contig6478:7617..7821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6478 7618..7821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6478.14303.1prot_H-paniculata_contig6478.14303.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6478 6627..7821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6478.14303.1

>prot_H-paniculata_contig6478.14303.1 ID=prot_H-paniculata_contig6478.14303.1|Name=mRNA_H-paniculata_contig6478.14303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
NKSLLSLKLDYNPSLGSEGAGALCRGLRTNSTLKQLHLPYCNLGTDAGAP
LGEMLSYAKLQLAVLNLQGNRLEAAGTKALAPGLARNRSVVYLSLADNGI
GSGEADEAALEDFRDAMMSCPTL
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mRNA from alignment at H-paniculata_contig6478:6627..7821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6478.14303.1 ID=mRNA_H-paniculata_contig6478.14303.1|Name=mRNA_H-paniculata_contig6478.14303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-paniculata_contig6478:6627..7821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGTCCCTGCTGTCGCTGAAGCTTGACTATAACCCCTCGCTGGGAAG CGAGGGAGCGGGAGCGCTTTGCCGAGGCCTCCGGACAAACTCCACCTTAA AGCAGCTGCACCTTCCGTATTGCAACCTCGGCACGGATGCCGGGGCGCCC CTGGGCGAAATGCTCTCGTACGCCAAACTGCAGCTTGCTGTGCTTAACCT CCAGGTCGGTTATCGACGTGGCAGTACACACAAATTGTCAAGTAAAGATC CAAGGTATACAGAGGATACAAGCACTGATTAATAGAGTGTAGAAGCAAGA AGAAGGTTGGTAACGACGCGCAAAAAATGCGTACTTACTGGGCAGAAGGG TAAATATGATGCCACACTTGGGCAAAATATCAACTAGCGATTCATTTATT TCCAGCAGGTAGAATAGATTTCTGCTCGGCGCTTATTTCCCAAGGGGGTT TCTCTCAACCGGTATTCCGGTTGTTCAACTCCAGCGCTTATATTGGCAAC CCATTCCTTGAGAAACGACACACAAATAGCTTGATGGCATTTTTGTTGTG AGGTAGGTGGGTTCAGAGTTACCGTTCAGCATGATATCGAGATACCCTCC CTCCGTCTTCTCCCTCTTTTTAGTTGTACAAGGGTCATCCTATGGTACGG GGTGGGGGTGTTTTGAGCCGCTTAGTTTAACGAAGGAGCCGCTTTGAGAA GGGGACCGGGCATTTGTATTTTTTTGTTTTTGCATTTGTTGCCCCCCCTC AAACAGAAATCCGATTTGTTGTCCACGAACACATGTAAATGGCATGGTTC TGATACGCGTTTATTTTTGCATCGCTCTTTCGAAGCGGCCTTCGTTAAAC CATTGACCTCCCCCCTACCATAGGATGACTCACTACTCGCTCATGTTTCA AACTACACTCCCTTGTTGTTGTCGATGCTCTTCTATTAAAGTTTGCTCTT GGCACTTCTCGGCATCCCCACCCTTCCACACGAACTTTACTTGTGTTCCT CTCGCATTAAACTCATACTGTGATGCGCAGGGCAATCGACTGGAAGCGGC TGGCACAAAAGCGTTGGCACCTGGCCTCGCGCGCAACCGGTCCGTGGTCT ATCTCTCTCTAGCAGACAATGGCATTGGTTCTGGGGAGGCGGACGAGGCA GCACTCGAGGATTTCCGCGACGCGATGATGAGCTGCCCTACGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6478:6627..7821-

>mRNA_H-paniculata_contig6478.14303.1 ID=mRNA_H-paniculata_contig6478.14303.1|Name=mRNA_H-paniculata_contig6478.14303.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig6478:6627..7821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAAGTCCCTGCTGTCGCTGAAGCTTGACTATAACCCCTCGCTGGGAAG
CGAGGGAGCGGGAGCGCTTTGCCGAGGCCTCCGGACAAACTCCACCTTAA
AGCAGCTGCACCTTCCGTATTGCAACCTCGGCACGGATGCCGGGGCGCCC
CTGGGCGAAATGCTCTCGTACGCCAAACTGCAGCTTGCTGTGCTTAACCT
CCAGAACAAGTCCCTGCTGTCGCTGAAGCTTGACTATAACCCCTCGCTGG
GAAGCGAGGGAGCGGGAGCGCTTTGCCGAGGCCTCCGGACAAACTCCACC
TTAAAGCAGCTGCACCTTCCGTATTGCAACCTCGGCACGGATGCCGGGGC
GCCCCTGGGCGAAATGCTCTCGTACGCCAAACTGCAGCTTGCTGTGCTTA
ACCTCCAGGGCAATCGACTGGAAGCGGCTGGCACAAAAGCGTTGGCACCT
GGCCTCGCGCGCAACCGGTCCGTGGTCTATCTCTCTCTAGCAGACAATGG
CATTGGTTCTGGGGAGGCGGACGAGGCAGCACTCGAGGATTTCCGCGACG
CGATGATGAGCTGCCCTACGTTGGGCAATCGACTGGAAGCGGCTGGCACA
AAAGCGTTGGCACCTGGCCTCGCGCGCAACCGGTCCGTGGTCTATCTCTC
TCTAGCAGACAATGGCATTGGTTCTGGGGAGGCGGACGAGGCAGCACTCG
AGGATTTCCGCGACGCGATGATGAGCTGCCCTACGTTG
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