mRNA_H-paniculata_contig6458.14283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6458.14283.1
Unique NamemRNA_H-paniculata_contig6458.14283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6458.14283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6458contigH-paniculata_contig6458:8445..8765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_003200.1
Exons1
Model size321
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.75902-CDS-H-paniculata_contig6458:8444..87591622930751.75902-CDS-H-paniculata_contig6458:8444..8759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6458 8445..8759 -
1691481436.3081148-CDS-H-paniculata_contig6458:8444..87591691481436.3081148-CDS-H-paniculata_contig6458:8444..8759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6458 8445..8759 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930751.8100667-UTR-H-paniculata_contig6458:8759..87651622930751.8100667-UTR-H-paniculata_contig6458:8759..8765Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6458 8760..8765 -
1691481436.3189528-UTR-H-paniculata_contig6458:8759..87651691481436.3189528-UTR-H-paniculata_contig6458:8759..8765Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6458 8760..8765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6458.14283.1prot_H-paniculata_contig6458.14283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6458 8445..8759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6458.14283.1

>prot_H-paniculata_contig6458.14283.1 ID=prot_H-paniculata_contig6458.14283.1|Name=mRNA_H-paniculata_contig6458.14283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDKVTKEPKRRCSSDRTVFCTYRYCTKNRGLCLIKMGKPEAALSDFSKAC
ELEPTVAVYHYQKASLLHHHFTRREIKSTHSPIKRALEIVISEVWRDDYS
DSILR
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mRNA from alignment at H-paniculata_contig6458:8445..8765-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6458.14283.1 ID=mRNA_H-paniculata_contig6458.14283.1|Name=mRNA_H-paniculata_contig6458.14283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig6458:8445..8765- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTATATGGACAAAGTAACCAAAGAACCCAAGCGGCGTTGTTCGTCAGA
CCGTACTGTATTTTGCACGTACCGGTACTGTACGAAAAACAGGGGACTGT
GCCTGATCAAGATGGGAAAGCCGGAAGCAGCGTTGTCGGACTTCTCCAAA
GCTTGTGAGCTGGAGCCTACCGTCGCTGTGTACCACTATCAGAAGGCTTC
ACTCCTGCACCACCACTTTACCAGGCGAGAAATTAAGTCCACGCATTCGC
CGATCAAGCGGGCGCTCGAAATAGTTATTAGTGAAGTATGGCGGGATGAT
TATTCGGACTCGATCTTACGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6458:8445..8765-

>mRNA_H-paniculata_contig6458.14283.1 ID=mRNA_H-paniculata_contig6458.14283.1|Name=mRNA_H-paniculata_contig6458.14283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig6458:8445..8765- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAAGTAACCAAAGAACCCAAGCGGCGTTGTTCGTCAGACCGTAC
TGTATTTTGCACGTACCGGTACTGTACGAAAAACAGGGGACTGTGCCTGA
TCAAGATGGGAAAGCCGGAAGCAGCGTTGTCGGACTTCTCCAAAGCTTGT
GAGCTGGAGCCTACCGTCGCTGTGTACCACTATCAGAAGGCTTCACTCCT
GCACCACCACTTTACCAGGCGAGAAATTAAGTCCACGCATTCGCCGATCA
AGCGGGCGCTCGAAATAGTTATTAGTGAAGTATGGCGGGATGATTATTCG
GACTCGATCTTACGTATGGACAAAGTAACCAAAGAACCCAAGCGGCGTTG
TTCGTCAGACCGTACTGTATTTTGCACGTACCGGTACTGTACGAAAAACA
GGGGACTGTGCCTGATCAAGATGGGAAAGCCGGAAGCAGCGTTGTCGGAC
TTCTCCAAAGCTTGTGAGCTGGAGCCTACCGTCGCTGTGTACCACTATCA
GAAGGCTTCACTCCTGCACCACCACTTTACCAGGCGAGAAATTAAGTCCA
CGCATTCGCCGATCAAGCGGGCGCTCGAAATAGTTATTAGTGAAGTATGG
CGGGATGATTATTCGGACTCGATCTTACGT
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