prot_H-paniculata_contig64236.14233.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig64236.14233.1
Unique Nameprot_H-paniculata_contig64236.14233.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 91.3 bits (225), Expect = 4.910e-19
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNGNS-TEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            MKDLG+  ++LG+E+RRDR  G +T+S   YI +VLKR+    C+ + TP     K+S+ E      ++   S   Y   VGSLMYA   TRPD+A+AV   +R M +P R  +   K
Sbjct:  990 MKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLSSHECPKSEEDKEDMSLVPYSSAVGSLMYAMVCTRPDLAHAVSVVSRYMHNPGRMHWKAVK 1107          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A6D2J1R0_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2J1R0_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 2.330e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDP 108
            MKDLG+ SR+LGI+++RDR  G + +S   Y+ +V+KR+   + + V TP  G  K+SA   A +  +       Y   VGSLMYA  GTRPD+AYA+   +R M  P
Sbjct: 1068 MKDLGAASRILGIDIKRDRKEGVLWLSQSGYLGKVIKRFNMVEAKTVNTPMGGHFKLSAVSDASECVDTE--KVPYSSAVGSLMYAMVGTRPDLAYAIGLVSRFMSKP 1173          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 89.0 bits (219), Expect = 3.170e-18
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVH 99
            +KDLG    +LG+EV+RD+  GTI+IS   YI EVLKRYG + C+ V TP E    ++  ES  +  EQ      Y+ ++GSLMY   GTRPDIA+AV+
Sbjct: 1053 LKDLGEPKYILGLEVKRDKTQGTISISQKKYIGEVLKRYGMENCKPVSTPIE--PGLTQEESTSQREEQL-QGIPYQSLIGSLMYLVQGTRPDIAFAVN 1148          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A2G8RNC8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RNC8_9APHY)

HSP 1 Score: 89.0 bits (219), Expect = 3.190e-18
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNG-NSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            + D G +  +LG  V RDR   T+++S  +YI  +++R+G D  + + TP +  V++SA +S    +E  G  +  YR+ VGSL YAS GTRPDI YAV   +R +E+P R  +  CK
Sbjct: 1189 ISDEGEIHWILGFAVIRDRSARTLSLSQTAYIDAIIRRFGLDDAKPLSTPMDPHVQLSAEQSPKTMAEVAGMRNVPYREAVGSLQYASLGTRPDITYAVSVLSRFLENPGRAHWEACK 1306          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR)

HSP 1 Score: 88.6 bits (218), Expect = 4.330e-18
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNG-NSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            MKDLG+ SR+LGI++RRDR    + +S  +Y+ ++L+++G    + V TP   + K+S  +      E+   NS  Y ++VGSLMYA   TRPDIAYAV   +R M +P +  +   K
Sbjct: 1019 MKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLSIDQCPSTDVERAYMNSIPYANIVGSLMYAMVCTRPDIAYAVSLVSRYMANPGKAHWQALK 1136          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 85.1 bits (209), Expect = 4.360e-18
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAE-GKVKISAPESADK--PSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            M D G ++ +LG+ VRRDR  G I I   +Y+  VL+R+G D+CR + TP E GK       S +K  P E+  N   Y+  +GSL+YAS GTRPD++Y+V   ++ M  P  E +   K
Sbjct:   84 MVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGK-------SFEKLAPDEKPVNLKSYQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWKGVK 196          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A1J3IYK5_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IYK5_NOCCA)

HSP 1 Score: 87.8 bits (216), Expect = 5.050e-18
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQ-NGNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            MKD+G  SR+LG+++ RDR  GT+ +S  SYI +VLK +G  + +   TP     ++ +    ++  E  +   T Y   VGSLMYA  G+RPDIAYAV   +R M +P R+ ++  K
Sbjct:  115 MKDMGKASRILGMDIIRDRERGTLQLSQESYIEKVLKTFGMTEAKPTTTPLATHFRLKSLTKDERKEEAVHMEDTPYASAVGSLMYAMIGSRPDIAYAVGVISRFMSNPGRDHWTAVK 232          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A537R0H1_9PROT (DDE-type integrase/transposase/recombinase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537R0H1_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 5.770e-18
Identity = 49/108 (45.37%), Postives = 65/108 (60.19%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDP 108
            MKDLG ++  LG+ + RDR N TI ++  +YI  V+KR G + C  V TP     K+       K SE + N  EY+ +VGSLMYA  GTRPDIA+AV Q ++   DP
Sbjct:  596 MKDLGEINHYLGMHIIRDRRNQTIHVNQTAYINAVIKRAGMEGCNAVSTPMIPGRKLET----RKGSEPSVNKHEYQHLVGSLMYAMLGTRPDIAFAVQQLSQFNADP 699          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 88.2 bits (217), Expect = 5.940e-18
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQN----GNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDPCREDFSTCK 117
            M+DLG  S +LGI +RRDRP   I +S   YI  VL RYG   C+   TP    VK SA +  D  +  +    G S  Y  ++GS+MYA  GTRPDIAY V    R   +P R  +   K
Sbjct: 1205 MRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAK 1325          
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 87.8 bits (216), Expect = 8.070e-18
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 0
Query:    1 MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTPAEGKVKISAPESADKPSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVHQAARRMEDP 108
            MKD+G+ SR+LGI+++RDR  G + +S  SY+ +V+KR+   + + V TP  G  K+SA +   +  +       Y   VGS+MYA  GTRPDIAYA+   +R M  P
Sbjct: 1063 MKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLSAVKEVSECIDTE--KYPYSSAVGSVMYAMIGTRPDIAYAIGLISRFMSKP 1168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig64236.14233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1MW82_ARTAN4.910e-1940.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2J1R0_9BRAS2.330e-1842.59Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
A0A293MM55_ORNER3.170e-1848.48Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A2G8RNC8_9APHY3.190e-1839.83Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3N065_TRIPR4.330e-1839.83Copia LTR rider n=1 Tax=Trifolium pratense TaxID=5... [more]
A0A7M5XDS1_9CNID4.360e-1840.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1J3IYK5_NOCCA5.050e-1839.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A537R0H1_9PROT5.770e-1845.37DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A1M2VT18_TRAPU5.940e-1842.15Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3F7G4_NOCCA8.070e-1841.67Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF253coord: 1..110
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig64236contigH-paniculata_contig64236:1..414 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig64236.14233.1mRNA_H-paniculata_contig64236.14233.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig64236 1..633 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig64236.14233.1 ID=prot_H-paniculata_contig64236.14233.1|Name=mRNA_H-paniculata_contig64236.14233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MKDLGSLSRVLGIEVRRDRPNGTITISHGSYICEVLKRYGFDKCRGVPTP
AEGKVKISAPESADKPSEQNGNSTEYRDMVGSLMYASTGTRPDIAYAVHQ
AARRMEDPCREDFSTCK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like