mRNA_H-paniculata_contig1223.1421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1223.1421.1
Unique NamemRNA_H-paniculata_contig1223.1421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1223.1421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1223contigH-paniculata_contig1223:13968..15289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size536
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1223.1421.1prot_H-paniculata_contig1223.1421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1223 13968..15097 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.0390892-CDS-H-paniculata_contig1223:13967..142721622928945.0390892-CDS-H-paniculata_contig1223:13967..14272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1223 13968..14272 -
1691480676.1742778-CDS-H-paniculata_contig1223:13967..142721691480676.1742778-CDS-H-paniculata_contig1223:13967..14272Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1223 13968..14272 -
1622928945.0527382-CDS-H-paniculata_contig1223:15060..150971622928945.0527382-CDS-H-paniculata_contig1223:15060..15097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1223 15061..15097 -
1691480676.189099-CDS-H-paniculata_contig1223:15060..150971691480676.189099-CDS-H-paniculata_contig1223:15060..15097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1223 15061..15097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928945.0692956-UTR-H-paniculata_contig1223:15097..152891622928945.0692956-UTR-H-paniculata_contig1223:15097..15289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1223 15098..15289 -
1691480676.199084-UTR-H-paniculata_contig1223:15097..152891691480676.199084-UTR-H-paniculata_contig1223:15097..15289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1223 15098..15289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1223.1421.1

>prot_H-paniculata_contig1223.1421.1 ID=prot_H-paniculata_contig1223.1421.1|Name=mRNA_H-paniculata_contig1223.1421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
MLPKNSALLSNKDVMTLQSAIQNPMAISVTDFLLMLNDAQAVEQLTKIYR
GTLIGPIVPESNGDHDDGGGVQFAADDDDLYAGTSPILHAARSGSAGMFT
TVVEAMQDKLTSLK
back to top

mRNA from alignment at H-paniculata_contig1223:13968..15289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1223.1421.1 ID=mRNA_H-paniculata_contig1223.1421.1|Name=mRNA_H-paniculata_contig1223.1421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1322bp|location=Sequence derived from alignment at H-paniculata_contig1223:13968..15289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCCACTGTGGGAATTTCTCTCTTTTGCCCTCTGACCGCGGGTCTGGGC
TACTGTACATTCTAGTATTGCATATAAAACACTGATCCGCAGCCAGAGTC
AACGTCTCTAGTAACACAGCGTATATGGGGGAGGGGCAAGCTCTTCTTGT
TGATTCTGAACCGGAGTGGTACACTATCCCCTGCGGGAAAAGATGTTGCC
GAAGAATTCAGCCCTTCTCAGCAACAAAGGTGATTTGCTGTTACCTATGC
TTGGGATGTCTTAGTCTGTCATACTTTCGACGACAATACCGCATAGCTGT
AGCAGCACCATCTCTAAGGTGACCAGGGCCAAAGCGTTGGCCTACACTGC
TACTTGCAAATGATGCGATAGCAGTATTCCACTATTCTCTTTCTCCAAGT
AGTCGAATTTCCAAATTTGGGATAATTCAAGGCAAGTCATTCTCAACGAC
GGGTGAACAAAACCGTTCCAGAAAGAGCCAGCGTAGCTTCCAGGGAGCAG
CAGCAGCAGCTTTCAACAACAGCGCACACAGCAGATGCACATACATACAA
GCGCATATATCTGCATCTAGTCAAGGGACTGTGAACAAGCATCATCTGCC
GGGAAATATGGATTGCACTACAGCTGTGTGTGTGTATTTCTCGTGCCTTG
TCGGTTGGAAATTGTAACGATTCGGAAACAAACCGATTGGAGGCCCAACA
CAAATGAAAAATGACTCCCCAAAAAAACAAATTCAGCGTTAGATCCGCCC
ACTTCCCAAATGGGATGACTTGGTAAGCTGTGGCGTCGTTTAGAATGGGC
CTTAGTGTTGACCTTTCTCCGGCAAGGCCCCCAGCGCAGGCATAAAGTAA
GGCAATCTGGAACCTACTAACCGCTCGATGGATGTTCAACCGCTTTCTGT
TAATTGTGGCAGATTCATGACTGTTCACCTCGTGTAGCTGCTGATGTGAC
AGTCTTATCACCTACATGAGTGCATCTTATCTTAACGCGCGCCTTGTTCT
TTGCATGCTATCATTAGATGTGATGACACTGCAGTCGGCCATACAAAATC
CCATGGCTATTTCGGTGACGGATTTCCTGCTGATGCTGAATGACGCTCAA
GCTGTCGAACAGCTCACAAAGATATACCGCGGCACCCTCATAGGCCCTAT
TGTCCCTGAGTCGAACGGGGATCATGACGATGGTGGAGGTGTCCAGTTCG
CGGCTGACGATGATGACTTGTACGCGGGAACATCGCCAATCCTCCACGCA
GCTCGCAGCGGGAGCGCGGGGATGTTCACAACTGTCGTCGAAGCCATGCA
AGACAAGCTTACTTCCCTGAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1223:13968..15289-

>mRNA_H-paniculata_contig1223.1421.1 ID=mRNA_H-paniculata_contig1223.1421.1|Name=mRNA_H-paniculata_contig1223.1421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig1223:13968..15289- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCCGAAGAATTCAGCCCTTCTCAGCAACAAAGATGTTGCCGAAGA
ATTCAGCCCTTCTCAGCAACAAAGATGTGATGACACTGCAGTCGGCCATA
CAAAATCCCATGGCTATTTCGGTGACGGATTTCCTGCTGATGCTGAATGA
CGCTCAAGCTGTCGAACAGCTCACAAAGATATACCGCGGCACCCTCATAG
GCCCTATTGTCCCTGAGTCGAACGGGGATCATGACGATGGTGGAGGTGTC
CAGTTCGCGGCTGACGATGATGACTTGTACGCGGGAACATCGCCAATCCT
CCACGCAGCTCGCAGCGGGAGCGCGGGGATGTTCACAACTGTCGTCGAAG
CCATGCAAGACAAGCTTACTTCCCTGAAGATGTGATGACACTGCAGTCGG
CCATACAAAATCCCATGGCTATTTCGGTGACGGATTTCCTGCTGATGCTG
AATGACGCTCAAGCTGTCGAACAGCTCACAAAGATATACCGCGGCACCCT
CATAGGCCCTATTGTCCCTGAGTCGAACGGGGATCATGACGATGGTGGAG
GTGTCCAGTTCGCGGCTGACGATGATGACTTGTACGCGGGAACATCGCCA
ATCCTCCACGCAGCTCGCAGCGGGAGCGCGGGGATGTTCACAACTGTCGT
CGAAGCCATGCAAGACAAGCTTACTTCCCTGAAG
back to top