mRNA_H-paniculata_contig63892.14195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 145 bits (367), Expect = 5.660e-40 Identity = 78/175 (44.57%), Postives = 113/175 (64.57%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+ G G+ M D+DYA++ RRSVSGG V+ GGG +SW +RTQ+ TE EYV LA+++ ++LFLRQV+ F+LP + + EDNQGA ++A S+ ++HIDV+HH + + V ++ + +V Q+AD L KAL
Sbjct: 64 SPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKAL 238
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 145 bits (365), Expect = 1.410e-39 Identity = 79/175 (45.14%), Postives = 111/175 (63.43%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+G G G+ M D+DYA++ RRSVSGG V+ G G ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ ++H DV+HH + + V ++ + YV Q+AD L KAL
Sbjct: 103 SPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKAL 277
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 144 bits (363), Expect = 5.110e-38 Identity = 79/175 (45.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+ G G+ M D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ ++HIDV+HH + + V ++ + +V Q+AD L KAL
Sbjct: 248 SPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 144 bits (363), Expect = 4.170e-37 Identity = 79/175 (45.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+ G G+ M D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ ++HIDV+HH + + V ++ + +V Q+AD L KAL
Sbjct: 422 SPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE) HSP 1 Score: 137 bits (345), Expect = 2.780e-36 Identity = 78/176 (44.32%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGK-VDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+D GIT+ G G+ M D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ +HIDV+HH + + V K + + +V Q+AD L +AL
Sbjct: 147 SPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRAL 322
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 142 bits (359), Expect = 3.740e-36 Identity = 78/175 (44.57%), Postives = 112/175 (64.00%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+ G G+ M D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ ++HIDV+HH + + V ++ + +V Q+A+ L KAL
Sbjct: 943 SPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKAL 1117
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5L0C9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C9_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.300e-35 Identity = 77/175 (44.00%), Postives = 111/175 (63.43%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYGGQDY-GVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL V+RT+DLGIT+ + G+ + D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV LA+++ ++LFLRQV F+LP + + EDNQGA ++A S+ ++HIDV+HH + + V ++ + +V QYAD L KAL
Sbjct: 707 SPKEIHWRAGLGILGCVVRTSDLGITFRRRSVAGLSIEVFADADYASKAADRRSVSGGLVICGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMSCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQYADFLTKAL 881
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.430e-34 Identity = 71/175 (40.57%), Postives = 111/175 (63.43%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P + H +A + IL YV RT+ +GIT+ G G+ M D+DYA++ RRSVSGG V+ GGG ++W +RTQ+ TE EYV +A+++ ++LFLRQV F+LP + + EDNQGA ++A+ ++ ++HIDV+HH + + VE ++ + V Q+AD L KA+
Sbjct: 131 SPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 129 bits (325), Expect = 1.780e-34 Identity = 72/175 (41.14%), Postives = 106/175 (60.57%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P + H A + IL Y RT+ GI++ G G + D+D+A++ RRSVSGG V GGGA+SW +RTQ+ TE EYV L E+V +LFLRQ+ F+LP + + + EDNQGA ++A S+ ++HIDV+HH + + VE ++ V++V Q AD L K+L
Sbjct: 26 SPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 200
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Match: A0A6H5LC04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC04_9PHAE) HSP 1 Score: 137 bits (346), Expect = 2.090e-34 Identity = 77/175 (44.00%), Postives = 111/175 (63.43%), Query Frame = 1
Query: 4 NPGVEHKRAGVKILHYVLRTADLGITYG-GQDYGVEMLA*TDSDYATRQDSRRSVSGGEVLLGGGAISWHARTQEVTAAGMTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKKHSSRRTRHIDVKHHIVCDAVEAGKVDVVYVGIGEQYADILKKAL 525
+P H RAG+ IL YV+RT+DLGIT+G G + M D+DYA++ RRSVSGG V+ GGG ISW +RTQ+ TE EYV +A+++ +LLFLR+V F+LP + + EDNQ A ++A S+ ++HIDV+HH + + V ++ + +V Q+AD L KAL
Sbjct: 939 SPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAMLSMEVFGDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSVADVMKELLFLRKVWRFMLPEAGMPCIPVFEDNQRALQLAQNPISNSNSKHIDVRHHSIRELVGREEISIFHVESAYQHADFLTKAL 1113 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63892.14195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig63892.14195.1 >prot_H-paniculata_contig63892.14195.1 ID=prot_H-paniculata_contig63892.14195.1|Name=mRNA_H-paniculata_contig63892.14195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp MTEVEYVELAEIVNDLLFLRQVQAFILPTLEHYPVMIKEDNQGAEKMANKback to top mRNA from alignment at H-paniculata_contig63892:307..831- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig63892.14195.1 ID=mRNA_H-paniculata_contig63892.14195.1|Name=mRNA_H-paniculata_contig63892.14195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=525bp|location=Sequence derived from alignment at H-paniculata_contig63892:307..831- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig63892:307..831- >mRNA_H-paniculata_contig63892.14195.1 ID=mRNA_H-paniculata_contig63892.14195.1|Name=mRNA_H-paniculata_contig63892.14195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig63892:307..831- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |