mRNA_H-paniculata_contig638.14187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig638.14187.1 vs. uniprot
Match: D7G732_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G732_ECTSI) HSP 1 Score: 454 bits (1169), Expect = 9.980e-141 Identity = 239/470 (50.85%), Postives = 311/470 (66.17%), Query Frame = 1
Query: 1 GASGATCDSQDVTDPTSRRDSTGWVSEDL--GAGERRQGHISGRVVAWDMDVLVVYGGTGLRNDDVNDVLATSSNLSV--FTNADEISQSWTQQLEMISYGLSPPALFRPGAFVWNNSLFIVGGHTDTSYEVTSEIWRADIQAFKEAPEGMWRPVDWTIANDSVDNSAPTAMYGLTATVLATDDEDPQEVWVAVLGGMTAYQESVDENYILHVTDTGEYFSCD-DSTLPASSTYSCAYRTHTRRVTQTRCETPTDSQGEWWSLSEKLAPGTSSGPTQRSYHAAVSISSDGHGNSSCLYMFAGRNYEGGALYSDLWRLCPVGGYLGTSANTTFWWSELTPAGNSPQARYGHTFTSGLEDGQYRLLLYAGSGRYPNSYLDDDFTHEYDAHMNAWIDTSLANGSAFTPGERRDHVLEGVGDFMYLVAGIDADE-ALMDMWSANFSRS-CPGGFTLNGSSSASADGCVECSAGT 1389
G A CD + VTDP S RD TGW S+D GAG+RRQGH+S V AWD VV+GGT +R DDVNDV+ + + V TN +WT+ LEM++Y +P A+FRP +FVW+NSLF+V GHT+ + VT+EIWRADIQ F+EAPEG+WRP++ + + YG TATVL T + +P E W V+GGMT Q SVD N ILH++++ + F CD D+ + +S+Y+C RT TR PT+++GEW L +L+ S P RSYHA S++S+G G S+CLYM+ GRNYE LYSDLW LCPV YLG S +TTF W+EL+PAG P RYG F +G++D +R+LLY G+GRYPNSY+ D+FT EYD +MNAW+D+SL +GS+ P RRDH LEGVGDF+ L+AGI+ DE AL DMW+ NFS C G + S S+ C C GT
Sbjct: 22 GIDAAVCDGETVTDPVSLRDPTGWDSQDSIGGAGQRRQGHVSAEVTAWDQKHAVVFGGTSVRTDDVNDVVGREAGVFVVDITNP----ANWTE-LEMVAYDGAPHAVFRPASFVWDNSLFVVCGHTEEPFTVTTEIWRADIQGFEEAPEGLWRPINASKTDALGGQVYDIPRYGHTATVLNTGEANPTEAWAIVIGGMTGSQNSVDTNLILHLSESSDEFVCDEDALVNITSSYTCGQRTPTR---------PTETEGEWLYLDSRLS--NDSKPASRSYHAVASLASNGLGGSACLYMYGGRNYEMSILYSDLWSLCPVSNYLGNSEDTTFTWTELSPAGTLPLGRYGAVFVAGIKDAPHRILLYGGTGRYPNSYMADEFTKEYDTYMNAWVDSSLEDGSSTYPVGRRDHTLEGVGDFLVLIAGINNDEEALQDMWNVNFSSPMCSSGNYMFFCESTSSPVCGVCPDGT 475 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig638.14187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig638.14187.1 >prot_H-paniculata_contig638.14187.1 ID=prot_H-paniculata_contig638.14187.1|Name=mRNA_H-paniculata_contig638.14187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=531bp GASGATCDSQDVTDPTSRRDSTGWVSEDLGAGERRQGHISGRVVAWDMDVback to top mRNA from alignment at H-paniculata_contig638:22905..28309+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig638.14187.1 ID=mRNA_H-paniculata_contig638.14187.1|Name=mRNA_H-paniculata_contig638.14187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5405bp|location=Sequence derived from alignment at H-paniculata_contig638:22905..28309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig638:22905..28309+ >mRNA_H-paniculata_contig638.14187.1 ID=mRNA_H-paniculata_contig638.14187.1|Name=mRNA_H-paniculata_contig638.14187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3186bp|location=Sequence derived from alignment at H-paniculata_contig638:22905..28309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |