mRNA_H-paniculata_contig638.14183.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig638.14183.1
Unique NamemRNA_H-paniculata_contig638.14183.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig638.14183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig638contigH-paniculata_contig638:5313..7134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size382
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig638.14183.1prot_H-paniculata_contig638.14183.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig638 5313..7134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930737.7642705-CDS-H-paniculata_contig638:5312..54091622930737.7642705-CDS-H-paniculata_contig638:5312..5409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 5313..5409 -
1691481429.926536-CDS-H-paniculata_contig638:5312..54091691481429.926536-CDS-H-paniculata_contig638:5312..5409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 5313..5409 -
1622930737.777792-CDS-H-paniculata_contig638:6323..64261622930737.777792-CDS-H-paniculata_contig638:6323..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 6324..6426 -
1691481429.9366255-CDS-H-paniculata_contig638:6323..64261691481429.9366255-CDS-H-paniculata_contig638:6323..6426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 6324..6426 -
1622930737.7900364-CDS-H-paniculata_contig638:6953..71341622930737.7900364-CDS-H-paniculata_contig638:6953..7134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 6954..7134 -
1691481429.951537-CDS-H-paniculata_contig638:6953..71341691481429.951537-CDS-H-paniculata_contig638:6953..7134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig638 6954..7134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig638.14183.1

>prot_H-paniculata_contig638.14183.1 ID=prot_H-paniculata_contig638.14183.1|Name=mRNA_H-paniculata_contig638.14183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
AGHAVVLSCEGFKVHDEYKHAAKSYTEVAVPGMLKWLEDEAGHATRDGLS
CQTMGRKVLGEKASDTFMSNPRLMFRGFEDVQKEIRRDYMTTYRTKTNPN
DEMLSGEQHSDVLKRFCADLWERLQME
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mRNA from alignment at H-paniculata_contig638:5313..7134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig638.14183.1 ID=mRNA_H-paniculata_contig638.14183.1|Name=mRNA_H-paniculata_contig638.14183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1822bp|location=Sequence derived from alignment at H-paniculata_contig638:5313..7134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGCCACGCTGTCGTCTTGAGTTGCGAAGGATTCAAGGTACACGACGA
GTACAAGCATGCCGCGAAGTCTTACACCGAGGTTGCAGTGCCGGGCATGC
TGAAGTGGTTAGAGGATGAAGCCGGCCACGCCACTCGCGACGGACTGTCT
TGTCAGACTATGGGTCGGAAAGTGCTGGGAGGTGAGCATTAGAACCGTTA
CACCACATCGAATGATACCACCTGGAAGCGTTAGAGGGGACATATCGTTA
CGCTGTGTAGTGTCGAGGAGACAACATGAGTATGGGCGACCTCGTGAGAA
ACCTTTTGTGTTGCCTTGTTCACTGTCGCTGTCGTTTCTACAGGCTATAT
TCTCTTCGATTTGTATACTGCCGACATATCGAATAATCGCCTTCATTTTG
GACGATCCTTTCTTTTCGAGTGAGGCAAAACAATCCAGCACCATCGACCC
AACACATGATGTAGGATTACCGACAGAAGACGACGTGCTTAGTAGGGTGT
TCTTCGTTGGCCTGTTTGCTGCTCCCTTGGACCGCTATCGCTTCGCACAA
CAGCTGGTGCGCTTCAACCCACAGTGCTTAAGTGTGACGCTCCGAAGCTA
CGGTGCACTGTGCAAACAGTACAGCTGTCCCTAATTCTTAATGTATACCG
TCCATAGCAGTAACGTAGCAGCCTTTGCCCTTCGCGTCCACCCTATGTGT
GCAAGCAGAGAAGGCTTCCGACACGTTTATGTCAAATCCCCGGTTGATGT
TTCGAGGCTTCGAGGACGTGCAGAAGGAGATAAGGAGGGATTACATGACG
ACTTACCGGACGTGAGTGGATGGGATGAGTTGTGGAATGCCAATGAAGAT
TTCAGTCAGTGTAAAACGGAATGTGAACGATGCATTCGGAATAAGGACAA
CCGAAGCGTCAGGCAACTTCTTACGGCACCACTTGTGTCCAGAAGCGATA
TTTGAGAACATAATCAAAACCCACCCTGCAGCATACGCCATGATTCACCC
ATTGACACCGGCATAATGTGTCGACAAAGACCAGGAAATTCGGCCTGCTC
CTGTGAGCAAGCATGCTGTGGGCTGTCTGTTGTGTGCAAAGGGACTATCT
GTACCACAAATGCTAAAGCATGAGTCATGTTCCGCCATTCCAAAAAATGA
AACCGTTTCAAAATGCGCGTTGAATTTTTGGCAAGAATAGAAGGCCGGGG
GGGTTGATTTTGGTCTCGTGCAATTACAAACAAATTCGCAGGCAAAACCT
TGGACAACAAGTGGTTTTGAGGAATAGGTAGTTGCTTTTTTGAACAAAAT
CTAAAATGAACCTGGAGAATCCAACTGCCGTAAGGAACGACGTCAATGCA
ATCGGAAAGCGCAACTTTCTCTTGACGCGCAAAATGCCACCTCGCATGCC
GCTTGAGCAACAAGGCGTGATAGGCTAGCACAGTCAGATCAGGCACGGTA
TTGGCCCGAAGAATGCATAGGGTAGGATCCAGCACGGGACTACCATCCGC
GAAAAAATATGGTAGCGCGTACCGCCGGGGAAAATTCCACGACCAATACC
GACCGTATTGCGCAATAGCTACATACCGCACGAAATTAAGCCCCTTGAGA
AACGTCGGTGTGACCGCAGAGTATGGACTCGTCACCAGGTAGAAATCGAC
ACTCCACGGCAGAAGTCAAGGGGGGCAAGCGAGCAGCACAGAAATGATGA
TACCGTTCACGTCTTCGTCCCGCAGGAAGACAAACCCGAACGACGAGATG
CTTTCCGGGGAACAGCACAGCGACGTTCTTAAACGCTTCTGTGCAGACCT
GTGGGAGCGATTGCAGATGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig638:5313..7134-

>mRNA_H-paniculata_contig638.14183.1 ID=mRNA_H-paniculata_contig638.14183.1|Name=mRNA_H-paniculata_contig638.14183.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig638:5313..7134- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGGCCACGCTGTCGTCTTGAGTTGCGAAGGATTCAAGGTACACGACGA
GTACAAGCATGCCGCGAAGTCTTACACCGAGGTTGCAGTGCCGGGCATGC
TGAAGTGGTTAGAGGATGAAGCCGGCCACGCCACTCGCGACGGACTGTCT
TGTCAGACTATGGGTCGGAAAGTGCTGGGAGGCCGGCCACGCTGTCGTCT
TGAGTTGCGAAGGATTCAAGGTACACGACGAGTACAAGCATGCCGCGAAG
TCTTACACCGAGGTTGCAGTGCCGGGCATGCTGAAGTGGTTAGAGGATGA
AGCCGGCCACGCCACTCGCGACGGACTGTCTTGTCAGACTATGGGTCGGA
AAGTGCTGGGAGAGAAGGCTTCCGACACGTTTATGTCAAATCCCCGGTTG
ATGTTTCGAGGCTTCGAGGACGTGCAGAAGGAGATAAGGAGGGATTACAT
GACGACTTACCGGACAGAAGGCTTCCGACACGTTTATGTCAAATCCCCGG
TTGATGTTTCGAGGCTTCGAGGACGTGCAGAAGGAGATAAGGAGGGATTA
CATGACGACTTACCGGACGAAGACAAACCCGAACGACGAGATGCTTTCCG
GGGAACAGCACAGCGACGTTCTTAAACGCTTCTGTGCAGACCTGTGGGAG
CGATTGCAGATGGAGGAAGACAAACCCGAACGACGAGATGCTTTCCGGGG
AACAGCACAGCGACGTTCTTAAACGCTTCTGTGCAGACCTGTGGGAGCGA
TTGCAGATGGAG
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