prot_H-paniculata_contig6331.14124.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6331.14124.1
Unique Nameprot_H-paniculata_contig6331.14124.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length174
Homology
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT)

HSP 1 Score: 109 bits (273), Expect = 2.930e-26
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPV--GGKVKILAPESAKKPPNRNHLGLGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVFQAE----RWC 168
            ++DLG +S +L + ++RDR + T++ISQ  Y+  VLKR   +EC+ V TP+  G +   L+ +     P   H    I+G L Y +T  RP++A AV   ++ M  P +E +   KRI   +    + GITF +K+    L G+++ DW  D E R+ST+GY+FQ       WC
Sbjct:   55 VEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDET---PANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWC 225          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438EM37_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EM37_VITVI)

HSP 1 Score: 107 bits (268), Expect = 4.040e-26
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+G   K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ +   K I   L    D  + F   +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:    1 MKDLGAAKQILGMRIIRDKTNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPRKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDVDFAGDIDSRKSTTGFVF 164          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438D3R9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438D3R9_VITVI)

HSP 1 Score: 109 bits (272), Expect = 6.710e-26
Identity = 60/166 (36.14%), Postives = 95/166 (57.23%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG    +L + + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+G   K+   +S+K    R+H+        +GSLMYA    RP+IA+AV   +R +  P ++ +   K I   L    D  + F S +    L+G+ +TD+  D++ RKSTTG+VF
Sbjct:    1 MKDLGVAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSSKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFISRPRKQHWEAIKWILRYLKGSLDTCLCFTSASLK--LQGYVDTDFAGDIDSRKSTTGFVF 164          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438JVK6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JVK6_VITVI)

HSP 1 Score: 109 bits (273), Expect = 1.150e-25
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+G   K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ + T K I   L    D  + F   +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:  134 MKDLGAAKQILGMRIIRDKTNGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPRKQHWETIKWILRYLKGSLDTCLCFTGASLK--LQGYVDVDFAGDIDSRKSTTGFVF 297          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438CG45_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CG45_VITVI)

HSP 1 Score: 106 bits (264), Expect = 3.650e-25
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL     +E + V TP+G   K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ +   K I   L    D  + F S +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:   29 MKDLGATKQILGMRIIRDKVNGTLKLSQSEYVKKVLSGFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMNKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTSASLK--LQGYVDADFAGDIDSRKSTTGFVF 192          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 107 bits (267), Expect = 5.570e-25
Identity = 56/170 (32.94%), Postives = 91/170 (53.53%), Query Frame = 0
Query:    3 DLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLGLGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVFQAE----RWC 168
            D+G +  VL + +RRDR  G ++ISQ  Y++ +LKR G ++C+ V TP+            + P N N     ++G L Y +T  RP++A AV   ++ M  P +E +   KR+   +    + G+ F  K+    L G+++ DW  D++ R+ST+GYVFQ       WC
Sbjct:   17 DMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQK-LIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWC 185          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438HHN1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HHN1_VITVI)

HSP 1 Score: 107 bits (268), Expect = 5.590e-25
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+G   K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ +   K I   L    D  + F   +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:   73 MKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVF 236          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438FU81_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FU81_VITVI)

HSP 1 Score: 108 bits (271), Expect = 6.450e-25
Identity = 59/166 (35.54%), Postives = 94/166 (56.63%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL +   +E + V TP+GG  K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ +   K I   L    D  + F   +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:  200 MKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSKFNMNEAKPVSTPLGGHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVF 363          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 110 bits (275), Expect = 7.060e-25
Identity = 61/172 (35.47%), Postives = 96/172 (55.81%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLGLGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVFQAE----RWC 168
            ++DLG +S +L + ++RDR + T++ISQ  Y+  VLKR   +EC+ V TP+    +       ++P N  H    I+G L Y +T  RP++A AV   ++ M  P +E +   KRI   +    + GITF +K+    L G+++ DW  D E R+ST+GY+FQ       WC
Sbjct: 1061 VEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANI-HEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWC 1231          
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Match: A0A438EU98_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=7 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EU98_VITVI)

HSP 1 Score: 107 bits (268), Expect = 7.750e-25
Identity = 59/166 (35.54%), Postives = 93/166 (56.02%), Query Frame = 0
Query:    1 MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTPVGGKVKILAPESAKKPPNRNHLG----LGIVGSLMYASTENRPNIAYAVHQAARRMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVEDVEDRKSTTGYVF 162
            MKDLG+   +L + + RD+ NGT+ +SQ +Y+++VL R   +E + V TP+G   K+   +S K    R+H+        +GSLMYA    RP+IA+AV   +R M  P ++ +   K I   L    D  + F   +    L+G+ + D+  D++ RKSTTG+VF
Sbjct:   57 MKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLK--LQGYVDADFAGDIDSRKSTTGFVF 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6331.14124.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7KSC5_PARCT2.930e-2635.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438EM37_VITVI4.040e-2635.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A438D3R9_VITVI6.710e-2636.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JVK6_VITVI1.150e-2536.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CG45_VITVI3.650e-2535.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9D5L2_PARCT5.570e-2532.94Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A438HHN1_VITVI5.590e-2535.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FU81_VITVI6.450e-2535.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9IUY0_PARCT7.060e-2535.47Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438EU98_VITVI7.750e-2535.54Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 32..162
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 32..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6331contigH-paniculata_contig6331:11949..12543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6331.14124.1mRNA_H-paniculata_contig6331.14124.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6331 11502..12694 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6331.14124.1 ID=prot_H-paniculata_contig6331.14124.1|Name=mRNA_H-paniculata_contig6331.14124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MKDLGSLSLVLRIEVRRDRPNGTISISQGDYIREVLKRCGFDECRGVPTP
VGGKVKILAPESAKKPPNRNHLGLGIVGSLMYASTENRPNIAYAVHQAAR
RMEDPCREDFSTCKRIFCCLSTVPDLGITFGSKNNGHGLEGFANTDWVED
VEDRKSTTGYVFQAERWCDALVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like