mRNA_H-paniculata_contig6327.14120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6327.14120.1
Unique NamemRNA_H-paniculata_contig6327.14120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6327.14120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6327contigH-paniculata_contig6327:5141..9147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size829
Cds size804
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6327.14120.1prot_H-paniculata_contig6327.14120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6327 5164..9147 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.5415905-UTR-H-paniculata_contig6327:5140..51631622930729.5415905-UTR-H-paniculata_contig6327:5140..5163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6327 5141..5163 +
1691481426.2006562-UTR-H-paniculata_contig6327:5140..51631691481426.2006562-UTR-H-paniculata_contig6327:5140..5163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6327 5141..5163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930729.5571845-CDS-H-paniculata_contig6327:5163..51991622930729.5571845-CDS-H-paniculata_contig6327:5163..5199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 5164..5199 +
1691481426.2142773-CDS-H-paniculata_contig6327:5163..51991691481426.2142773-CDS-H-paniculata_contig6327:5163..5199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 5164..5199 +
1622930729.571034-CDS-H-paniculata_contig6327:5568..56641622930729.571034-CDS-H-paniculata_contig6327:5568..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 5569..5664 +
1691481426.2235112-CDS-H-paniculata_contig6327:5568..56641691481426.2235112-CDS-H-paniculata_contig6327:5568..5664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 5569..5664 +
1622930729.5834079-CDS-H-paniculata_contig6327:8475..91471622930729.5834079-CDS-H-paniculata_contig6327:8475..9147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 8476..9147 +
1691481426.2392828-CDS-H-paniculata_contig6327:8475..91471691481426.2392828-CDS-H-paniculata_contig6327:8475..9147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6327 8476..9147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6327.14120.1

>prot_H-paniculata_contig6327.14120.1 ID=prot_H-paniculata_contig6327.14120.1|Name=mRNA_H-paniculata_contig6327.14120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MLRIGEGVFVKKYWPEKKLPLWRRGAVTVVRGDGTYDVRYDNGEADHIIR
RSRILVAGGGNEPASLSQLHLYDDGDGKGRILDDRNDTDRGALQALWREK
ERRRQGEAGGQRVLQRVASVSPLGRGFFPRLAEDASAHRQPQKRQQIEEE
EEEERSHGSDEGSAAPPPEAAIAATAATAATTANAANADRAPSPMNAAET
ESSLLPRDCTDSALASTVRAPPPPRPSLLPPLPPFHQQGKSTGKGRWIAE
ASVPGLAHARDSTDHAIE
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mRNA from alignment at H-paniculata_contig6327:5141..9147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6327.14120.1 ID=mRNA_H-paniculata_contig6327.14120.1|Name=mRNA_H-paniculata_contig6327.14120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4007bp|location=Sequence derived from alignment at H-paniculata_contig6327:5141..9147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGAGGCATCGGAGGGTGAGGATGCTGAGAATTGGCGAGGGTGTGTTC
GTGAAGAAGGTGTGTAATTATTTCATGATATTTTGCGGTGTATAGTCTGT
TCTTCTCCATAGCTGCGAATGCGTACACCGTATGTATTCCCTGACTGCAG
GGGTTGTACACAAGCAGTGGCGGTTAGGTCGTTGGGGGGCATGATGACGC
ATCTTTTGTACCGGTTTCTTGCCTGGTGTCTGTATGCCAAAAACCCGTCA
CGTCCTGCCTCCCCCTCCCCCTGTTGAATTCCAGTCGTGTCATTTTACGG
GCAGAATCAATGTCGCGTCCTTGGCACAATCGTCTCCATTCTGCCAATGA
TACAGTGAAATTCGTCGAGATGTTGCTTCTTTGTTGTTTGCATGTGTCTC
TTTTGTCGTCCTGTTGATGAAAATGTAGTATTGGCCAGAAAAAAAACTTC
CCCTGTGGCGGCGCGGCGCGGTGACTGTGGTTCGCGGTGACGGCACTTAC
GACGTCCGCTACGACAACGGGGAGGTGGGCGTTGGGGGGGGGGGGGGGGG
GGGTACTTATGTTTTACATGCCGTAGTTTTTATACAATTTACCATGTGTC
CTCGCGAGGATGGAGCTGGCAAGGGGGCGGGGGGGAGGCTTTGTGCTCAA
CACGGTATTTAGTCACTGCAGTAACTTTTTTGTGGTTGTTATATTCCGGG
GTATTGGCATATGCCTGGGGGCAAGATTATTCGCAGTCGATTCCTCGAAT
AATAATGTGCTGCGTGTGGTATCGAAAGTTAGATGTCACTGAAAAGATAT
CGTGTATTTCGATGGTAGCGTAGCGCAGCAGGGTCTTGCGTTTTTTTCTC
CAAGAAATTGAGTATGAAGTTCGAGGGAGAGGGGAGGGAGTAGGCGCGTG
GGGCGGGCGGGGGTACAATGCTGAGACACGGTTTGAAAGTTGATGCTCGA
GATTTGACAAATTTGATAACAAAGCAGAAGAGCAGAAAAAAATATCTCAG
GTAGACACGTGACGACACCCGCAAGGTAAGCTCAGTAATTTTAATATTTA
CTGATTGACTCAAGCACAAAACCAGACAAATACTTCTGAGTTATGTAGTG
AGATTGCATCCCGTAGGGTGAGATCATTCAGCCGTAGCGTTGCTGTATAC
AGCATTTAGGGCATGGAGGAGTTTATGCAGTATATCCTGCGAGCTTGGTG
ACCTCCGTCGCAGAGTTCACTCTCCGTTGGGCGTCTGCTGAAGTAGCAGT
GTACTTCCTCTGTCCCATAAGTCTGAATCGTTATGATTATTTGTTGGTAT
ATTGTCGAATTTGGGATTCGAAAGCCCACAACTCCGCCTTGTACACACAT
ATCTCCAAAATTTCAATTTCAATATAAAATAATTGAGAAAAAAATATCTC
ATCTGTTTTTTTTTTGTTTTGTTTTTCACGTGGCAACTTTTTGAGAGACA
GCAAAATCGACCAAAAACGGTCAAAAACGATTATTAATCGCCGATATCGT
CTCGACGAGACCTCTGATGATCCCTGAATCAAAACACAGTGAAACGAAGA
TATTTTCTGTAGTGATTCGAATATTCTGGTCTGAGGTGGTTCCCATGTTC
TGTCCTGACGTTGTTCGAACTAGATTTTAGTAAGTACTCGGAGTAGAGCA
TTTCACGTGACGTTTTTGCTCCACTTGTGAATGGCCACTCAGCGTCCTCG
AGGTGCCTACCGCCCCCACATCCCTCACAATACCCCCGGGTCAAGCACCG
TCACCCACATGGCTACCCTCAATAGTCCGTCATCGTTCCCAGGGACCGCA
CCGGCTCGGGGGAAACATGCCGAACTGAACGGGAAGGCCGGAACGCATCT
GCTTTGCGCTACGCTTTGACTCTCCCTCACTGTAAACAACGGCTGCCGAA
AGGCGCTGGAGCCGACTTTGGAGCCGACTTTGGTGTGAATATCAGCTACC
CGAAAAAAATGTGGTCACATGTGCAGGAGCAACGGAAGAACAAGAACACC
GTTTCCCTGCAATCAGCGGCGAGAGCCGGCTGATCGTCGGACTTCACGCC
AATTCGGCATTTTTCCCTGAAGCCGGTGGGGTCCCCGGGAGCGATGACGG
ACTATTTAGGATAGCCGTGTGGGTGACGGTGCTTGACCCGAGGGTATTGT
GAGGGATGTGGGGGCGGTAGGCATCTCGAGGACGCTGAGCGGTCATTCAC
AAGTGGGGCGAAAACGTCACGTGCAATACTCTACTACGAGTACTTACCAA
AATCTAATTCGAACAACGTCAGAACAGAAACTTTGAACCGCCTTAGACTA
GAATATTCAAACGATGACAGAACATATCAATCTTTTACTTTGTTTTGGTC
CAGGGCTCATAGGAGGTCTCGTCGAGATGATATCGGCAGTGAACCACAAT
TTTTGGCCGTTTTTGGTCGATTTTGCTGTTTCTCAAAAAGTTGCAGTTTC
GAAAACAACCGAGACAAACAGCTCAGAAATTTCAATTTTAGAGTCATCTG
TGTGCAGTACGAAGTTGTGGGTTTTCGAATAATATGCTCGTGTTTTTTTT
TATCTCAAATTTGACGAAGGTAGTAACAAATGACCATAAAGATGCAGACT
TATGGGGCAGAGGAAGCATTTGTTTTTGTGTGCCACGTCGCCCAGCCAAT
GGGAACATGATGCTGCCTCCCTGTTTACTGTTTTTTCGTCACGTAGTTCG
TTAGCGAATGTCTAGCGTAGTAGTTGTTGACCAACAGCAGATCAAATCTC
CGAAATTGGCTGATTCTGACAGCATGGGTTTTGTGCCCCTGCCTCACCCC
TCTCCATCTATCCTGTTTGAACAACCGTCGCTGCTGTCCTCTGTTATTTT
CTTAGGCGGGTTGGATAGCTGAAAAAAAACCGTGTAGGTTCTTGTGGTGA
GGTTGTCCAACCCCTAATATTTGGTAACAAGAGTCATTAACCAGATAGCA
CTTCTCGGATTTATTCGTGAAAGATCGCGTGTCGTGCACCCAAACAATGC
CCCACAAGTTGATCGGTTTGTGGATAATAACGAAGTAATGCAGCAGCCTT
GAAAACAATGACTATACCTCCGGTCCATTAAACCCTTATTGTTATCGCCA
TGTCTTACACTGTACGAGTACACTGCTCGACGCTTCATATTCTACTTTTT
TACCGCAAATCCTGCCCTCCCCTCGTCCTCCCGAAGATACATGATCAAAG
GTCCAACAACTTCGACATGTAAAACATGGGTAGGCGCCCCCCCTCCCCCT
CCCCTACTCCATCCCTACAACTGACCGGCTGCCGCTTTACGCTCATTCTT
TATCCTTGGATGTTCTGCCCTTGCCGAACGCAAAGGCGGACCACATCATC
CGGCGGTCGAGGATACTCGTGGCCGGGGGAGGCAACGAGCCGGCAAGCCT
GTCGCAACTACATCTTTACGACGACGGGGACGGGAAGGGGCGAATCCTCG
ACGACCGCAACGATACTGACCGAGGGGCGCTCCAGGCACTGTGGCGAGAG
AAAGAACGGCGTCGGCAGGGGGAGGCAGGGGGGCAGCGGGTGCTGCAAAG
AGTGGCGAGTGTTTCCCCGCTGGGGCGAGGGTTTTTTCCAAGGCTCGCTG
AAGACGCTTCTGCGCACAGGCAACCTCAGAAACGACAGCAGATAGAGGAA
GAGGAAGAGGAAGAGCGGTCTCATGGATCGGATGAGGGATCGGCCGCGCC
GCCACCCGAGGCTGCTATTGCTGCCACTGCTGCCACTGCTGCCACTACTG
CCAATGCTGCCAATGCTGACCGCGCCCCGTCGCCGATGAATGCAGCAGAA
ACGGAATCGTCACTGCTACCTCGAGACTGCACGGACTCCGCACTCGCCAG
CACTGTGAGAGCACCACCGCCACCACGACCTTCACTGCTACCACCACTAC
CACCATTTCATCAACAAGGCAAGTCTACTGGAAAAGGGAGATGGATCGCC
GAGGCTAGCGTGCCGGGGTTGGCACACGCACGCGACAGCACCGACCACGC
TATTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6327:5141..9147+

>mRNA_H-paniculata_contig6327.14120.1 ID=mRNA_H-paniculata_contig6327.14120.1|Name=mRNA_H-paniculata_contig6327.14120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig6327:5141..9147+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAGAATTGGCGAGGGTGTGTTCGTGAAGAAGATGCTGAGAATTGG
CGAGGGTGTGTTCGTGAAGAAGTATTGGCCAGAAAAAAAACTTCCCCTGT
GGCGGCGCGGCGCGGTGACTGTGGTTCGCGGTGACGGCACTTACGACGTC
CGCTACGACAACGGGGAGTATTGGCCAGAAAAAAAACTTCCCCTGTGGCG
GCGCGGCGCGGTGACTGTGGTTCGCGGTGACGGCACTTACGACGTCCGCT
ACGACAACGGGGAGGCGGACCACATCATCCGGCGGTCGAGGATACTCGTG
GCCGGGGGAGGCAACGAGCCGGCAAGCCTGTCGCAACTACATCTTTACGA
CGACGGGGACGGGAAGGGGCGAATCCTCGACGACCGCAACGATACTGACC
GAGGGGCGCTCCAGGCACTGTGGCGAGAGAAAGAACGGCGTCGGCAGGGG
GAGGCAGGGGGGCAGCGGGTGCTGCAAAGAGTGGCGAGTGTTTCCCCGCT
GGGGCGAGGGTTTTTTCCAAGGCTCGCTGAAGACGCTTCTGCGCACAGGC
AACCTCAGAAACGACAGCAGATAGAGGAAGAGGAAGAGGAAGAGCGGTCT
CATGGATCGGATGAGGGATCGGCCGCGCCGCCACCCGAGGCTGCTATTGC
TGCCACTGCTGCCACTGCTGCCACTACTGCCAATGCTGCCAATGCTGACC
GCGCCCCGTCGCCGATGAATGCAGCAGAAACGGAATCGTCACTGCTACCT
CGAGACTGCACGGACTCCGCACTCGCCAGCACTGTGAGAGCACCACCGCC
ACCACGACCTTCACTGCTACCACCACTACCACCATTTCATCAACAAGGCA
AGTCTACTGGAAAAGGGAGATGGATCGCCGAGGCTAGCGTGCCGGGGTTG
GCACACGCACGCGACAGCACCGACCACGCTATTGAAGCGGACCACATCAT
CCGGCGGTCGAGGATACTCGTGGCCGGGGGAGGCAACGAGCCGGCAAGCC
TGTCGCAACTACATCTTTACGACGACGGGGACGGGAAGGGGCGAATCCTC
GACGACCGCAACGATACTGACCGAGGGGCGCTCCAGGCACTGTGGCGAGA
GAAAGAACGGCGTCGGCAGGGGGAGGCAGGGGGGCAGCGGGTGCTGCAAA
GAGTGGCGAGTGTTTCCCCGCTGGGGCGAGGGTTTTTTCCAAGGCTCGCT
GAAGACGCTTCTGCGCACAGGCAACCTCAGAAACGACAGCAGATAGAGGA
AGAGGAAGAGGAAGAGCGGTCTCATGGATCGGATGAGGGATCGGCCGCGC
CGCCACCCGAGGCTGCTATTGCTGCCACTGCTGCCACTGCTGCCACTACT
GCCAATGCTGCCAATGCTGACCGCGCCCCGTCGCCGATGAATGCAGCAGA
AACGGAATCGTCACTGCTACCTCGAGACTGCACGGACTCCGCACTCGCCA
GCACTGTGAGAGCACCACCGCCACCACGACCTTCACTGCTACCACCACTA
CCACCATTTCATCAACAAGGCAAGTCTACTGGAAAAGGGAGATGGATCGC
CGAGGCTAGCGTGCCGGGGTTGGCACACGCACGCGACAGCACCGACCACG
CTATTGAA
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