mRNA_H-paniculata_contig63208.14115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63208.14115.1
Unique NamemRNA_H-paniculata_contig63208.14115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A6H5L348_9PHAE (TSPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L348_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.790e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            V+VVDEKTASASEILSAAL+DNGRAKLAGH+TFGKAKV  +
Sbjct:  134 VLVVDEKTASASEILSAALKDNGRAKLAGHKTFGKAKVQTL 174
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: D7G2Y9_ECTSI (Carboxyl-terminal protease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.990e-13
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            V+VVDEKTASASEILSAAL+DNGRAKLAGH+TFGKAKV  +
Sbjct:  330 VLVVDEKTASASEILSAALKDNGRAKLAGHKTFGKAKVQTL 370
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A7S3EWA5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EWA5_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 7.550e-10
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            V++VDEKTASASEILSAAL+DNGRA+L G +TFGKA +  +
Sbjct:   62 VLLVDEKTASASEILSAALQDNGRARLVGTKTFGKAVIQTV 102
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A162AD39_DAUCS (PDZ domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AD39_DAUCS)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-9
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ AL DNGRAKL GHRTFGK K+  +
Sbjct:  423 VVLVNEGSASASEILAGALHDNGRAKLVGHRTFGKGKIQSV 463
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A6L5BEA1_APIGR (PDZ domain-containing protein n=2 Tax=Apioideae TaxID=241778 RepID=A0A6L5BEA1_APIGR)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-9
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ AL DNGRAKL GHRTFGK K+  +
Sbjct:  401 VVLVNEGSASASEILAGALHDNGRAKLVGHRTFGKGKIQSV 441
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A9NQI3_PICSI (PDZ domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NQI3_PICSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.350e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ AL DNGRAKL GH+TFGK K+  +
Sbjct:  246 VVLVNEGSASASEILAGALHDNGRAKLVGHKTFGKGKIQSV 286
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A5P1ERD9_ASPOF (PDZ domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1ERD9_ASPOF)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ ALRDNGRA L GHRTFGK K+  +
Sbjct:  280 VVLVNEGSASASEILAGALRDNGRAILVGHRTFGKGKIQSV 320
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A0C9RPT5_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_4615_1955 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RPT5_9SPER)

HSP 1 Score: 57.8 bits (138), Expect = 1.360e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ AL DNGRAKL GH+TFGK K+  +
Sbjct:  391 VVLVNEGSASASEILAGALHDNGRAKLVGHKTFGKGKIQSV 431
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A2Z7BQ09_9LAMI (Carboxyl-terminal-processing peptidase 3, chloroplastic n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BQ09_9LAMI)

HSP 1 Score: 57.0 bits (136), Expect = 2.550e-8
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E++ASASEIL+ AL DNGRA L GHRTFGK K+  +
Sbjct:  386 VVLVNEESASASEILAGALHDNGRAILVGHRTFGKGKIQSV 426
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BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Match: A0A0A9CYX6_ARUDO (Carboxyl-terminal-processing protease n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CYX6_ARUDO)

HSP 1 Score: 55.8 bits (133), Expect = 2.860e-8
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI 123
            VV+V+E +ASASEIL+ AL DNGRA L GHRTFGK K+  +
Sbjct:   72 VVLVNEGSASASEILAGALHDNGRAILVGHRTFGKGKIQSV 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63208.14115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L348_9PHAE1.790e-1385.37TSPc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2Y9_ECTSI5.990e-1385.37Carboxyl-terminal protease n=1 Tax=Ectocarpus sili... [more]
A0A7S3EWA5_9EUKA7.550e-1070.73Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A162AD39_DAUCS5.330e-968.29PDZ domain-containing protein n=2 Tax=Daucus carot... [more]
A0A6L5BEA1_APIGR5.330e-968.29PDZ domain-containing protein n=2 Tax=Apioideae Ta... [more]
A9NQI3_PICSI1.350e-865.85PDZ domain-containing protein n=1 Tax=Picea sitche... [more]
A0A5P1ERD9_ASPOF1.360e-868.29PDZ domain-containing protein n=2 Tax=Asparagus of... [more]
A0A0C9RPT5_9SPER1.360e-865.85TSA: Wollemia nobilis Ref_Wollemi_Transcript_4615_... [more]
A0A2Z7BQ09_9LAMI2.550e-865.85Carboxyl-terminal-processing peptidase 3, chloropl... [more]
A0A0A9CYX6_ARUDO2.860e-865.85Carboxyl-terminal-processing protease n=1 Tax=Arun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63208contigH-paniculata_contig63208:508..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue2.8e-10
Seed eggNOG ortholog2880.D7G2Y9
Preferred nameCTPA
KEGG koko:K03797
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009579,GO:0016787,GO:0019538,GO:0031977,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044436,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.serine-type peptidase activity
EggNOG OGs2QSWI@2759,COG0793@1
EC3.4.21.102
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.7447078-CDS-H-paniculata_contig63208:507..6331622930728.7447078-CDS-H-paniculata_contig63208:507..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63208 508..633 +
1691481425.8602161-CDS-H-paniculata_contig63208:507..6331691481425.8602161-CDS-H-paniculata_contig63208:507..633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63208 508..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63208.14115.1prot_H-paniculata_contig63208.14115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63208 508..633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63208.14115.1

>prot_H-paniculata_contig63208.14115.1 ID=prot_H-paniculata_contig63208.14115.1|Name=mRNA_H-paniculata_contig63208.14115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
VVVVDEKTASASEILSAALRDNGRAKLAGHRTFGKAKVSDI*
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mRNA from alignment at H-paniculata_contig63208:508..633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63208.14115.1 ID=mRNA_H-paniculata_contig63208.14115.1|Name=mRNA_H-paniculata_contig63208.14115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=126bp|location=Sequence derived from alignment at H-paniculata_contig63208:508..633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTAGTTGTGGATGAAAAGACGGCTAGTGCTTCTGAAATCCTATCGGC
GGCCCTCCGGGACAATGGTCGAGCAAAGCTGGCAGGTCACAGGACGTTTG
GCAAGGCAAAGGTGAGTGACATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig63208:508..633+

>mRNA_H-paniculata_contig63208.14115.1 ID=mRNA_H-paniculata_contig63208.14115.1|Name=mRNA_H-paniculata_contig63208.14115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig63208:508..633+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTAGTTGTGGATGAAAAGACGGCTAGTGCTTCTGAAATCCTATCGGC
GGCCCTCCGGGACAATGGTCGAGCAAAGCTGGCAGGTCACAGGACGTTTG
GCAAGGCAAAGGTGAGTGACATTTGAGTGGTAGTTGTGGATGAAAAGACG
GCTAGTGCTTCTGAAATCCTATCGGCGGCCCTCCGGGACAATGGTCGAGC
AAAGCTGGCAGGTCACAGGACGTTTGGCAAGGCAAAGGTGAGTGACATTT
GA
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