mRNA_H-paniculata_contig63206.14114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63206.14114.1
Unique NamemRNA_H-paniculata_contig63206.14114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63206.14114.1 vs. uniprot
Match: A0A6H5K5S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.080e-12
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:   13 QVLVEELGYQADEVDDMDPQIAAVVIEKSLPRPRAGKD 126
            +VL++ELGY ADEVDDMDPQIAAVVIEKSLPRPRAG++
Sbjct:  188 KVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGEE 225
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BLAST of mRNA_H-paniculata_contig63206.14114.1 vs. uniprot
Match: D7FHC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC4_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.160e-12
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   13 QVLVEELGYQADEVDDMDPQIAAVVIEKSLPRPRAGKDV 129
            +VL++ELGY ADEVDDMDPQIAAVVIEKSLPRPRAG  +
Sbjct:   84 KVLMDELGYAADEVDDMDPQIAAVVIEKSLPRPRAGMPI 122
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BLAST of mRNA_H-paniculata_contig63206.14114.1 vs. uniprot
Match: A0A835YK24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK24_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.130e-6
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   13 QVLVEELGYQADEVDDMDPQIAAVVIEKSLPRPRAGKDV 129
            + L + L Y  +EV+DM+PQIAA+VIEK LPRPRAG  +
Sbjct:    3 KTLTDSLHYTEEEVNDMEPQIAAIVIEKGLPRPRAGMPI 41
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BLAST of mRNA_H-paniculata_contig63206.14114.1 vs. uniprot
Match: A0A7S3MDN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDN6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 6.990e-6
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   19 LVEELGYQADEVDDMDPQIAAVVIEKSLPRPRAGKDV 129
            L +ELGY  +EV+DM+PQIA+VVIE+SL RP+ G  V
Sbjct:   76 LKDELGYLPEEVEDMEPQIASVVIERSLTRPKKGMPV 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63206.14114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5S7_9PHAE3.080e-1284.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHC4_ECTSI3.160e-1282.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YK24_9STRA2.130e-658.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3MDN6_9STRA6.990e-662.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63206contigH-paniculata_contig63206:617..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_003980.1
Exons1
Model size129
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930728.6910465-CDS-H-paniculata_contig63206:616..7451622930728.6910465-CDS-H-paniculata_contig63206:616..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63206 617..745 +
1691481425.848937-CDS-H-paniculata_contig63206:616..7451691481425.848937-CDS-H-paniculata_contig63206:616..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63206 617..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63206.14114.1prot_H-paniculata_contig63206.14114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63206 617..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63206.14114.1

>prot_H-paniculata_contig63206.14114.1 ID=prot_H-paniculata_contig63206.14114.1|Name=mRNA_H-paniculata_contig63206.14114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MYVVQVLVEELGYQADEVDDMDPQIAAVVIEKSLPRPRAGKDV
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mRNA from alignment at H-paniculata_contig63206:617..745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63206.14114.1 ID=mRNA_H-paniculata_contig63206.14114.1|Name=mRNA_H-paniculata_contig63206.14114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig63206:617..745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGTAGTACAGGTGCTTGTGGAGGAGCTGGGCTATCAGGCTGATGA
AGTGGACGACATGGACCCTCAGATCGCGGCTGTAGTCATAGAGAAGTCGC
TGCCGCGGCCTCGCGCAGGTAAAGACGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig63206:617..745+

>mRNA_H-paniculata_contig63206.14114.1 ID=mRNA_H-paniculata_contig63206.14114.1|Name=mRNA_H-paniculata_contig63206.14114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig63206:617..745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGTAGTACAGGTGCTTGTGGAGGAGCTGGGCTATCAGGCTGATGA
AGTGGACGACATGGACCCTCAGATCGCGGCTGTAGTCATAGAGAAGTCGC
TGCCGCGGCCTCGCGCAGGTAAAGACGTAATGTATGTAGTACAGGTGCTT
GTGGAGGAGCTGGGCTATCAGGCTGATGAAGTGGACGACATGGACCCTCA
GATCGCGGCTGTAGTCATAGAGAAGTCGCTGCCGCGGCCTCGCGCAGGTA
AAGACGTA
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