prot_H-paniculata_contig6317.14106.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6317.14106.1
Unique Nameprot_H-paniculata_contig6317.14106.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length844
Homology
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BLAST of mRNA_H-paniculata_contig6317.14106.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.110e-13
Identity = 282/565 (49.91%), Postives = 323/565 (57.17%), Query Frame = 0 
Query:  254 AMAAARKKLVKQVAELGKGGRWQEAFVTVDAAIAEGLTPDLYVYSSCVGAVARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGCA-------------------DLLPVSALKSGQEQEGRDEYCGAAGNIFDNFDVSSKAVK--------KXXXXXXXXXXXXXGNGVE-ENRAEPDIQTFNTVMSACGRAGEWQLALDVMQ-AIREWGLLPNRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKS----------AHCVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAGIRPGXXXXXXXXXXXXXXXXXXXXXXXXREMEEEAATMAAAAMTEARQNGGKPAATAVDAASDVAPDVVSYNSALKACVDAGEWRLAVSLLEEMQRGG------------------RELAGRAGNSNRAMG-------------KPRLRSPV-------------------------------PAPNVVSYSMTIAACGRAGVSDRAMGLLKRMRDDG 717
            A  AA+K LVK+V +LGK GRW++A   VD+AI  GL PD YVY SCVGA A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   A                    +    A+  G    G     G A       DV  + ++        K    XXXXX    G G    +  +PDIQT NTVM+AC   GEW+LAL+VM+ A RE GL P R+  XXXXXXXXXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +          A   +XXXXXXXXXXXXXXXXXXXXXXXXXXX  +R GI PGXXXXXXXXXXXXXXXXXXXXXXXXR+ME            EA + G +P +          P+ VS+N+A+ AC +AGEW+ A+SLLEEM+R                    RE    A  +N+  G              PR  +P                                P P+VVSYS TI AC RAG  +RA+GLL +MR+DG
Sbjct:   44 AAMAAKKSLVKKVKDLGKVGRWRQAISEVDSAIEGGLLPDEYVYGSCVGAAADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAAKANAAPXXXXXXXXXXXXXVAESPAIGDGSSWSGVVGRSGTARVRAGEGDVRKEGLRLNGVGGGAKGSRSXXXXXSRRTGPGAACSSDYDPDIQTINTVMAACAAEGEWELALEVMKKAQREDGLHPTRITYXXXXXXXXXXXXXXRAVQLLREMRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGGKGGHGSGGARLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXTMRRKGIAPGXXXXXXXXXXXXXXXXXXXXXXXXRDME-----------AEAGERGREPGSDG-SGGGFAGPNRVSFNAAINACSNAGEWQQAISLLEEMRRNANAGSDAAEYNDDLALPANREHDSAADGNNKDAGLLAAGAAAAARNSDPRELTPSEYGGGITAPEGAEGVSKADRRRXXXXGRTGGPTPDVVSYSATITACSRAGNWERALGLLDQMREDG 596
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6317.14106.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI5.110e-1349.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 630..659
e-value: 1.8E-4
score: 21.5
coord: 567..594
e-value: 0.0036
score: 17.5
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 493..542
e-value: 2.1E-7
score: 31.0
coord: 685..732
e-value: 3.4E-7
score: 30.3
coord: 423..471
e-value: 8.1E-10
score: 38.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 287..340
e-value: 1.4E-5
score: 25.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 688..721
e-value: 2.2E-4
score: 19.2
coord: 630..659
e-value: 6.5E-5
score: 20.9
coord: 461..494
e-value: 1.3E-6
score: 26.2
coord: 533..564
e-value: 1.1E-4
score: 20.2
coord: 427..459
e-value: 9.8E-7
score: 26.6
coord: 724..756
e-value: 5.5E-4
score: 17.9
coord: 295..329
e-value: 1.8E-5
score: 22.6
coord: 567..594
e-value: 3.0E-4
score: 18.8
coord: 496..530
e-value: 2.1E-6
score: 25.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 565..599
score: 8.802
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 628..662
score: 10.928
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 10.819
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 293..327
score: 11.224
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 686..720
score: 11.082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 756..790
score: 7.191
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 328..358
score: 7.936
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 530..564
score: 11.192
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 721..755
score: 9.427
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..493
score: 11.071
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 11.378
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 620..828
e-value: 5.6E-28
score: 100.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 234..367
e-value: 2.4E-20
score: 74.6
coord: 507..610
e-value: 8.9E-24
score: 85.8
coord: 414..506
e-value: 1.4E-25
score: 91.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 273..355
coord: 624..661
coord: 685..796
coord: 418..595
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..31
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..31
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 32..843
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6317contigH-paniculata_contig6317:5947..11185 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6317.14106.1mRNA_H-paniculata_contig6317.14106.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6317 5871..11644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6317.14106.1 ID=prot_H-paniculata_contig6317.14106.1|Name=mRNA_H-paniculata_contig6317.14106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=844bp
MRLAWASSRGDMGHVTFVPPALTFAMLPVRATCRRCTRRELSTASRSCAT
SSAPSGVRRLRRTLPFAPRNERRQQFLVKRMTVAAEPPSSPGTTSKSTTP
STNMQVEGGVDCGKRNWLAQEDGEHNVHEAQVDVAIMGRSSQSEARLSSH
GHVHDDEPAPMHDSGKKKYTARGASRVRRRSSNVDVPLEQTATDADTLVS
PPAFASQLSTADQEDRSLSKGRTLAKRVTGKEKREVARPARARRQRHRRR
RDRAMAAARKKLVKQVAELGKGGRWQEAFVTVDAAIAEGLTPDLYVYSSC
VGAVARSGRWREALDILRKMRVAGFNPNTAVYNAAIHACGVGGRWEVTLR
LLGEMRGCADLLPVSALKSGQEQEGRDEYCGAAGNIFDNFDVSSKAVKKQ
QEKAAAAVGGSGGNGVEENRAEPDIQTFNTVMSACGRAGEWQLALDVMQA
IREWGLLPNRVTYNTAISACGKGGQPDAALGLLEDMRQTESGPDAFSYNS
AISACASTGRWENALTLLGEMKSAHCVTPDKFSFSSAIAACGKGGQWKLA
LGVLEAMKRAGIRPGRVAFNAAIEACAGSGQWKKAIYLLREMEEEAATMA
AAAMTEARQNGGKPAATAVDAASDVAPDVVSYNSALKACVDAGEWRLAVS
LLEEMQRGGRELAGRAGNSNRAMGKPRLRSPVPAPNVVSYSMTIAACGRA
GVSDRAMGLLKRMRDDGFAPTPATFTAAITACRKGGQARLVLTLLDRMRA
YGVKPDPICYGAALCSCGEAMLCEPALKLVAEMAAAGVEVDNSARRAVAV
ACAESETRRGLGDGGKDDDRGGETNRRGVRLKSSCREQGVKRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf