mRNA_H-paniculata_contig12214.1410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12214.1410.1
Unique NamemRNA_H-paniculata_contig12214.1410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12214.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12214contigH-paniculata_contig12214:479..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size587
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.71772-UTR-H-paniculata_contig12214:478..4891622928943.71772-UTR-H-paniculata_contig12214:478..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12214 479..489 +
1691480675.536631-UTR-H-paniculata_contig12214:478..4891691480675.536631-UTR-H-paniculata_contig12214:478..489Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12214 479..489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928943.7329102-CDS-H-paniculata_contig12214:489..10651622928943.7329102-CDS-H-paniculata_contig12214:489..1065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12214 490..1065 +
1691480675.5504816-CDS-H-paniculata_contig12214:489..10651691480675.5504816-CDS-H-paniculata_contig12214:489..1065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12214 490..1065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12214.1410.1prot_H-paniculata_contig12214.1410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12214 490..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12214.1410.1

>prot_H-paniculata_contig12214.1410.1 ID=prot_H-paniculata_contig12214.1410.1|Name=mRNA_H-paniculata_contig12214.1410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MMLMPRSDRDDSDGALRHHTNPYFAPTPTTTKSNNKNNNNKDDNLSLGSD
GGYSFAYLDAAAAAADSTHEEKQKEMDNNSNSTAGGAAVRVAPYFRRRTL
DGQTTVTLPSSAEKAAARNNHFFGALGHASAPVGGDNSGEVTSDRIADLK
GGHRHGRSGVGGSGSGSGSGWGFGLGLGLEDGSGDDRGGSRE
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mRNA from alignment at H-paniculata_contig12214:479..1065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12214.1410.1 ID=mRNA_H-paniculata_contig12214.1410.1|Name=mRNA_H-paniculata_contig12214.1410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at H-paniculata_contig12214:479..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGCCGCGATGATGTTGATGCCAAGATCAGACAGGGATGATAGCGAC
GGAGCCCTAAGACACCACACAAATCCCTACTTCGCACCAACACCCACCAC
AACTAAAAGCAATAACAAAAACAACAACAACAAGGACGACAATCTCAGCC
TCGGTAGCGATGGCGGGTACTCCTTCGCCTACCTGGATGCTGCCGCCGCC
GCGGCCGACTCAACCCATGAAGAAAAACAGAAAGAGATGGACAACAACAG
CAACAGCACCGCCGGAGGAGCAGCAGTGCGAGTCGCCCCCTATTTTCGAA
GGCGTACCCTGGATGGGCAGACGACGGTGACGCTGCCGTCCTCGGCCGAA
AAGGCCGCCGCGCGCAACAACCACTTCTTCGGCGCCCTTGGTCATGCCTC
GGCGCCGGTCGGTGGCGATAACAGTGGAGAAGTGACGAGCGACCGCATTG
CCGACTTAAAAGGAGGTCACCGGCACGGGCGCAGTGGTGTCGGCGGCAGC
GGCAGCGGGAGCGGGAGTGGCTGGGGGTTCGGGTTAGGGTTAGGATTGGA
GGACGGGAGTGGTGATGATCGTGGTGGGAGCAGGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12214:479..1065+

>mRNA_H-paniculata_contig12214.1410.1 ID=mRNA_H-paniculata_contig12214.1410.1|Name=mRNA_H-paniculata_contig12214.1410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig12214:479..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTTGATGCCAAGATCAGACAGGGATGATAGCGACGGAGCCCTAAG
ACACCACACAAATCCCTACTTCGCACCAACACCCACCACAACTAAAAGCA
ATAACAAAAACAACAACAACAAGGACGACAATCTCAGCCTCGGTAGCGAT
GGCGGGTACTCCTTCGCCTACCTGGATGCTGCCGCCGCCGCGGCCGACTC
AACCCATGAAGAAAAACAGAAAGAGATGGACAACAACAGCAACAGCACCG
CCGGAGGAGCAGCAGTGCGAGTCGCCCCCTATTTTCGAAGGCGTACCCTG
GATGGGCAGACGACGGTGACGCTGCCGTCCTCGGCCGAAAAGGCCGCCGC
GCGCAACAACCACTTCTTCGGCGCCCTTGGTCATGCCTCGGCGCCGGTCG
GTGGCGATAACAGTGGAGAAGTGACGAGCGACCGCATTGCCGACTTAAAA
GGAGGTCACCGGCACGGGCGCAGTGGTGTCGGCGGCAGCGGCAGCGGGAG
CGGGAGTGGCTGGGGGTTCGGGTTAGGGTTAGGATTGGAGGACGGGAGTG
GTGATGATCGTGGTGGGAGCAGGGAGATGATGTTGATGCCAAGATCAGAC
AGGGATGATAGCGACGGAGCCCTAAGACACCACACAAATCCCTACTTCGC
ACCAACACCCACCACAACTAAAAGCAATAACAAAAACAACAACAACAAGG
ACGACAATCTCAGCCTCGGTAGCGATGGCGGGTACTCCTTCGCCTACCTG
GATGCTGCCGCCGCCGCGGCCGACTCAACCCATGAAGAAAAACAGAAAGA
GATGGACAACAACAGCAACAGCACCGCCGGAGGAGCAGCAGTGCGAGTCG
CCCCCTATTTTCGAAGGCGTACCCTGGATGGGCAGACGACGGTGACGCTG
CCGTCCTCGGCCGAAAAGGCCGCCGCGCGCAACAACCACTTCTTCGGCGC
CCTTGGTCATGCCTCGGCGCCGGTCGGTGGCGATAACAGTGGAGAAGTGA
CGAGCGACCGCATTGCCGACTTAAAAGGAGGTCACCGGCACGGGCGCAGT
GGTGTCGGCGGCAGCGGCAGCGGGAGCGGGAGTGGCTGGGGGTTCGGGTT
AGGGTTAGGATTGGAGGACGGGAGTGGTGATGATCGTGGTGGGAGCAGGG
AG
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